CTDNEP1

General Information

Gene Name       : CTDNEP1
Gene ID             : ENSG00000175826.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTDNEP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CTDNEP1ENSG00000175826.11105.64119.75112.69ENCSR000AEF
HepG2CTDNEP1ENSG00000175826.1193.33110.70102.02ENCSR985KAT
K562CTDNEP1ENSG00000175826.11105.63100.72103.17ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTDNEP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTDNEP1 RNA is bound by 19 proteins.  







eCLIP assay for CTDNEP1 is not avaliable on ENCORE database.





19 proteins are bound to CTDNEP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1771506537150662-3'-UTR,CDS,intron-Distal,intron-Proximal3.822954.80912HepG2PPIG
chr1771501077150153-3'-UTR,CDS,intron-Distal,intron-Proximal5.2302237.73205K562PUM2
chr1771506437150662-3'-UTR,CDS,intron-Distal,intron-Proximal3.803903.02541K562IGF2BP2
chr1771474657147480-3'-UTR,intron-Distal,intron-Proximal3.494277.99373K562YBX3
chr1771501537150168-3'-UTR,CDS,intron-Distal5.0124711.82794K562PUM2
chr1771501087150152-3'-UTR,CDS,intron-Distal,intron-Proximal3.035545.77687HepG2PPIG
chr1771469967147028-3'-UTR,intron-Distal4.2177311.04068HepG2PCBP2
chr1771505947150629-3'-UTR,CDS,intron-Distal,intron-Proximal3.274497.44928HepG2PPIG
chr1771469527147042-3'-UTR,intron-Distal,intron-Proximal5.931789.23483K562PCBP1
chr1771501667150180-3'-UTR,CDS,intron-Distal3.237853.69775K562YBX3
chr1771501557150166-3'-UTR,CDS,intron-Distal3.092983.50044K562YBX3
chr1771506397150663-3'-UTR,CDS,intron-Distal,intron-Proximal3.735534.60014HepG2IGF2BP1
chr1771503077150401-3'-UTR,CDS,intron-Distal,intron-Proximal4.734824.86944K562AQR
chr1771474807147515-3'-UTR,CDS,intron-Distal,intron-Proximal3.8374116.11123K562YBX3
chr1771549227154987-5'-UTR,intron-Distal,intron-Proximal6.99523400.00000HepG2DDX59
chr1771546147154676-5'-UTR,CDS,intron-Distal,intron-Proximal3.272434.97433K562DHX30
chr1771549427154998-5'-UTR,intron-Distal,intron-Proximal4.9631549.81813K562PCBP1
chr1771546807154744-5'-UTR,intron-Distal,intron-Proximal4.4777947.40175HepG2DDX3X
chr1771549157154945-5'-UTR,intron-Distal,intron-Proximal7.64583400.00000HepG2PCBP2
chr1771549377154988-5'-UTR,intron-Distal,intron-Proximal3.183015.42369HepG2CSTF2T
chr1771550747155127-5'-UTR,intron-Distal,intron-Proximal3.897758.12116K562DDX3X
chr1771549157154981-5'-UTR,intron-Distal,intron-Proximal4.0208013.33584HepG2ILF3
chr1771549127154915-5'-UTR,intron-Distal7.1834365.26064HepG2PCBP2
chr1771551957155261-5'-UTR,intron-Distal3.291027.16911K562CSTF2T
chr1771548967154941-5'-UTR,intron-Distal,intron-Proximal5.3867514.13409HepG2PCBP1
chr1771547947154877-5'-UTR,intron-Distal,intron-Proximal4.3742210.77571HepG2PCBP1
chr1771549417155007-5'-UTR,intron-Distal,intron-Proximal5.3011137.34472HepG2PCBP1
chr1771547407154782-5'-UTR,intron-Distal,intron-Proximal5.268088.25079K562HNRNPK
chr1771549447154964-5'-UTR,intron-Distal,intron-Proximal4.3689717.07460K562ILF3
chr1771549187154937-5'-UTR,intron-Distal,intron-Proximal3.048858.56422HepG2CSTF2T
chr1771547447154812-5'-UTR,intron-Distal,intron-Proximal3.5464233.95849HepG2DDX3X
chr1771548007154970-5'-UTR,intron-Distal,intron-Proximal5.7070775.89164K562HNRNPK
chr1771547907154943-5'-UTR,intron-Distal,intron-Proximal3.0023717.52615HepG2LARP4
chr1771548767154960-5'-UTR,intron-Distal,intron-Proximal4.7210141.63373K562DROSHA
chr1771548907154909-5'-UTR,intron-Distal4.7178577.68689K562ILF3
chr1771547457154790-5'-UTR,intron-Distal,intron-Proximal5.2034734.26712HepG2DDX59
chr1771548127154898-5'-UTR,intron-Distal,intron-Proximal3.4191030.27375HepG2DDX3X
chr1771548747154942-5'-UTR,intron-Distal,intron-Proximal5.0608862.66722K562PCBP1
chr1771549097154944-5'-UTR,intron-Distal,intron-Proximal5.4567781.61921K562ILF3
chr1771548867154912-5'-UTR,intron-Distal7.0329183.31276HepG2PCBP2
chr1771547897154915-5'-UTR,intron-Distal,intron-Proximal3.477839.31358HepG2ILF3
chr1771549457154996-5'-UTR,intron-Distal,intron-Proximal6.91028400.00000HepG2PCBP2
chr1771548097154922-5'-UTR,intron-Distal,intron-Proximal6.43998400.00000HepG2DDX59
chr1771550787155127-5'-UTR,intron-Distal,intron-Proximal4.0738733.61531HepG2DDX3X
chr1771546497154738-5'-UTR,intron-Distal,intron-Proximal5.7728515.77311HepG2PCBP1
chr1771549357155007-5'-UTR,intron-Distal,intron-Proximal6.3596163.57340HepG2HNRNPK
chr1771546047154680-5'-UTR,CDS,intron-Distal,intron-Proximal4.8512559.67526HepG2DDX3X
chr1771548397154890-5'-UTR,intron-Distal3.7196751.77198K562ILF3
chr1771551627155255-5'-UTR,intron-Distal5.2228854.82495HepG2DDX3X
chr1771547337154780-5'-UTR,intron-Distal,intron-Proximal3.277057.64587K562ILF3
chr1771550677155126-5'-UTR,intron-Distal,intron-Proximal5.4939060.28760HepG2DDX59
chr1771546837154728-5'-UTR,intron-Distal,intron-Proximal4.2077514.65557K562PCBP1
chr1771546347154709-5'-UTR,intron-Distal,intron-Proximal3.556038.97686K562HNRNPK
chr1771551697155204-5'-UTR,intron-Distal3.366353.72734HepG2CSTF2T
chr1771548067154949-5'-UTR,intron-Distal,intron-Proximal3.042525.36979K562PUM1
chr1771548177154935-5'-UTR,intron-Distal,intron-Proximal5.3574182.78704HepG2HNRNPK
chr1771551997155262-5'-UTR,intron-Distal4.884179.67018K562DDX3X
chr1771545577154651-5'-UTR,CDS,intron-Distal,intron-Proximal3.215346.34300HepG2DROSHA
chr1771547997154960-5'-UTR,intron-Distal,intron-Proximal3.7236058.12902K562CSTF2T
chr1771548007154876-5'-UTR,intron-Distal,intron-Proximal4.1059823.17462K562DROSHA
chr1771547937154874-5'-UTR,intron-Distal,intron-Proximal4.5189746.58095K562PCBP1
chr1771548197154886-5'-UTR,intron-Distal,intron-Proximal5.3231145.49328HepG2PCBP2
chr1771493277149349-CDS,intron-Distal,intron-Proximal4.234824.89208K562AQR
chr1771475457147563-CDS,intron-Distal,intron-Proximal3.810803.18462K562IGF2BP2
chr1771478137147887-CDS,intron-Distal,intron-Proximal3.450884.63311K562AQR
chr1771493007149356-CDS,intron-Distal,intron-Proximal3.290978.52820HepG2PRPF8
chr1771545137154519-CDS,intron-Distal,intron-Proximal3.150563.99175HepG2IGF2BP1
chr1771475157147529-CDS,intron-Distal,intron-Proximal3.7462513.50128K562YBX3
chr1771545197154535-CDS,intron-Distal3.218034.45816HepG2IGF2BP1
chr1771545127154539-CDS,intron-Distal,intron-Proximal3.455183.81856K562IGF2BP1
chr1771478917147929-CDS,intron-Distal3.273044.08171K562YBX3
chr1771545087154565-CDS,intron-Distal,intron-Proximal3.577895.11891HepG2GRWD1
chr1771545117154542-CDS,intron-Distal,intron-Proximal4.543458.68543HepG2PPIG
chr1771550427155078-intron-Distal,intron-Proximal3.4821521.44079HepG2DDX3X
chr1771550417155067-intron-Distal,intron-Proximal5.7812931.41282HepG2DDX59
chr1771493007149327-intron-Distal,intron-Proximal5.243366.04760K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTDNEP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTDNEP1 is not available on ENCORE database.

  • 59 RBPs can affect the levels of CTDNEP1.  








The Knockdown/knockout RNA-Seq assay for CTDNEP1 is not available on ENCORE database.





59 RBPs can affect the gene expression of CTDNEP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTDNEP1ENSG00000175826.71534.061002471.58250-0.688107.161906.35030HepG2AKAP1
CTDNEP1ENSG00000175826.72067.859402506.67540-0.277603.543902.78410HepG2AUH
CTDNEP1ENSG00000175826.71640.088301217.360400.429904.059303.35060HepG2BOP1
CTDNEP1ENSG00000175826.71360.766901666.86040-0.292702.740101.97190HepG2CALR
CTDNEP1ENSG00000175826.7946.718401294.79240-0.451702.722201.38130HepG2CSTF2T
CTDNEP1ENSG00000175826.71075.490801395.52220-0.375803.270202.53590HepG2DDX21
CTDNEP1ENSG00000175826.71729.833902367.38550-0.452703.933503.19880HepG2DDX3X
CTDNEP1ENSG00000175826.7987.554801296.89160-0.393102.084301.40350HepG2DDX55
CTDNEP1ENSG00000175826.7974.771401317.73290-0.434904.653603.29890HepG2EIF3G
CTDNEP1ENSG00000175826.71818.789602186.35640-0.265503.202102.31520HepG2EIF4G1
CTDNEP1ENSG00000175826.72275.653702878.05670-0.338805.944705.11960HepG2ETF1
CTDNEP1ENSG00000175826.71158.218201539.69970-0.410706.513305.61580HepG2HNRNPU
CTDNEP1ENSG00000175826.71598.881302191.39510-0.454802.954801.66520HepG2KRR1
CTDNEP1ENSG00000175826.71755.864502244.71180-0.354302.540201.93170HepG2NCBP2
CTDNEP1ENSG00000175826.71471.156102140.97200-0.5413011.5702010.46770HepG2PCBP1
CTDNEP1ENSG00000175826.71417.219502178.60150-0.6203014.1773013.12720HepG2PTBP1
CTDNEP1ENSG00000175826.71917.690702226.80390-0.215602.859502.25900HepG2PUM1
CTDNEP1ENSG00000175826.71621.439902225.15580-0.456606.243905.25020HepG2PUM2
CTDNEP1ENSG00000175826.71442.687601687.85170-0.226402.612802.00940HepG2PUS1
CTDNEP1ENSG00000175826.71703.959502359.30350-0.469507.105706.17270HepG2QKI
CTDNEP1ENSG00000175826.7988.643701475.31130-0.577502.952902.22590HepG2RAVER1
CTDNEP1ENSG00000175826.71868.941402205.07390-0.238602.276101.48930HepG2RBM15
CTDNEP1ENSG00000175826.71639.972902405.51080-0.5527010.829709.95200HepG2RBM22
CTDNEP1ENSG00000175826.71682.442802141.28600-0.347903.427602.68340HepG2RBM25
CTDNEP1ENSG00000175826.71732.633702424.50580-0.484709.563108.66610HepG2NELFE
CTDNEP1ENSG00000175826.71902.277602258.22190-0.247502.917702.28630HepG2RECQL
CTDNEP1ENSG00000175826.7845.422501121.52310-0.407703.651102.95440HepG2RPS19
CTDNEP1ENSG00000175826.71204.179601691.63350-0.490403.132802.28330HepG2RPS3A
CTDNEP1ENSG00000175826.71671.000301371.193500.285203.835703.09820HepG2SAFB2
CTDNEP1ENSG00000175826.72475.702301946.386900.346902.062601.47940HepG2SF3A3
CTDNEP1ENSG00000175826.71654.075102268.05760-0.455408.493807.54670HepG2SF3B4
CTDNEP1ENSG00000175826.71391.945901599.08190-0.200102.324201.72710HepG2SMN1
CTDNEP1ENSG00000175826.71999.944602716.91450-0.442009.995909.20400HepG2SRFBP1
CTDNEP1ENSG00000175826.71589.406602367.42140-0.5748013.8390012.95540HepG2SRSF1
CTDNEP1ENSG00000175826.71613.692902071.18500-0.360105.375404.54460HepG2SRSF5
CTDNEP1ENSG00000175826.71540.899301926.07540-0.321904.672503.99060HepG2SRSF9
CTDNEP1ENSG00000175826.72091.362702358.88780-0.173701.900601.45490HepG2SSB
CTDNEP1ENSG00000175826.71493.227702185.22650-0.549304.920803.25880HepG2SSRP1
CTDNEP1ENSG00000175826.71801.872902355.47240-0.386507.662606.71330HepG2SUCLG1
CTDNEP1ENSG00000175826.71760.109302128.09810-0.273902.838702.27110HepG2TAF15
CTDNEP1ENSG00000175826.71141.542801496.25150-0.390404.294503.69980HepG2TIAL1
CTDNEP1ENSG00000175826.71592.753802049.39130-0.363703.734102.70530HepG2TUFM
CTDNEP1ENSG00000175826.71554.748901902.52930-0.291201.911601.37880HepG2U2AF1
CTDNEP1ENSG00000175826.71087.823301622.66380-0.576903.974002.70420HepG2XRCC6
CTDNEP1ENSG00000175826.71359.898301650.66580-0.279503.813603.04690HepG2ZC3H8
CTDNEP1ENSG00000175826.71048.318401474.34880-0.492003.182501.78410HepG2ZRANB2
CTDNEP1ENSG00000175826.72436.523301783.086000.450308.995708.04790K562AGGF1
CTDNEP1ENSG00000175826.72361.852101959.348800.269402.190401.32700K562AKAP8
CTDNEP1ENSG00000175826.72383.287001855.383500.361102.513901.89060K562AKAP8L
CTDNEP1ENSG00000175826.72519.044001981.104700.346503.101902.48750K562AQR
CTDNEP1ENSG00000175826.72304.503401946.747100.243302.533401.66150K562ATP5C1
CTDNEP1ENSG00000175826.72339.382301996.515000.228502.488201.66380K562DKC1
CTDNEP1ENSG00000175826.7924.47730743.905300.313402.751701.95680K562EIF3G
CTDNEP1ENSG00000175826.7925.776801209.28780-0.385402.687601.58060K562FKBP4
CTDNEP1ENSG00000175826.7597.28910849.56400-0.508302.039201.44490K562G3BP2
CTDNEP1ENSG00000175826.72705.846802205.800300.294702.852001.92460K562MBNL1
CTDNEP1ENSG00000175826.71871.904401093.125900.775902.155601.30350K562PABPN1
CTDNEP1ENSG00000175826.71092.926101705.42320-0.641906.870605.55780K562PCBP3
CTDNEP1ENSG00000175826.7875.852101308.11600-0.578707.936406.60150K562POLR2G
CTDNEP1ENSG00000175826.73013.864201840.019500.711803.375902.78490K562PUS1
CTDNEP1ENSG00000175826.72416.380901792.831600.430506.586405.69700K562RBM15
CTDNEP1ENSG00000175826.71562.412602207.38120-0.498605.344603.41890K562SSRP1
CTDNEP1ENSG00000175826.7908.099901142.62430-0.331402.311701.38990K562UCHL5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTDNEP1 is not available on ENCORE database.





15 RBPs can affect the splicing of CTDNEP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECTDNEP1ENSG00000175826.7chr17-714934471494567147869714795471495727149689-0.111000.000000.00000excludedK562SRSF1
SECTDNEP1ENSG00000175826.7chr17-714932971494567147869714795471495727149689-0.066000.007160.09715excludedK562SF3B4
SECTDNEP1ENSG00000175826.7chr17-714934471494567147869714795471495727149689-0.148000.000000.00000excludedK562PRPF8
SECTDNEP1ENSG00000175826.7chr17-715010971501397149674714968971503827150501-0.091000.000070.00201excludedHepG2U2AF1
SECTDNEP1ENSG00000175826.7chr17-714934471494567147869714795471495727149689-0.081000.000000.00000excludedHepG2U2AF1
SECTDNEP1ENSG00000175826.7chr17-714934471494567147869714795471495727149689-0.081000.000000.00000excludedHepG2U2AF2
SECTDNEP1ENSG00000175826.7chr17-714934471494567147869714795471495727149689-0.128000.000000.00000excludedK562AQR
SECTDNEP1ENSG00000175826.7chr17-715010971501397149674714968971503827150501-0.074000.002000.02193excludedK562AQR
SECTDNEP1ENSG00000175826.7chr17-714934471494567147869714795471495727149689-0.079000.000000.00002excludedK562EFTUD2
SECTDNEP1ENSG00000175826.7chr17-714934471494567147869714795471495727149689-0.081000.000000.00001excludedK562U2AF1
SECTDNEP1ENSG00000175826.7chr17-714922471494567147869714795471495727149689-0.088000.000360.01823excludedK562SF3B1
A3SSCTDNEP1ENSG00000175826.7chr17-7147869714801771478697147954714934471494560.059000.000000.00003longerK562U2AF2
A3SSCTDNEP1ENSG00000175826.7chr17-7147869714801771478697147954714934471494560.081000.000000.00000longerHepG2U2AF2
A3SSCTDNEP1ENSG00000175826.7chr17-7147869714806171478697147954714934471494560.060000.000000.00000longerK562AQR
A3SSCTDNEP1ENSG00000175826.7chr17-7147507714771171475077147564714786971480790.131000.000000.00000longerK562AQR
A3SSCTDNEP1ENSG00000175826.7chr17-7149572714978771495727149689715010971501810.119000.000000.00000longerK562AQR
A3SSCTDNEP1ENSG00000175826.7chr17-7150595715070671505957150662715451371546490.061000.000000.00002longerK562AQR
A3SSCTDNEP1ENSG00000175826.7chr17-7150109715027771501097150181715038271505010.111000.000000.00000longerK562AQR
A3SSCTDNEP1ENSG00000175826.7chr17-714786971480617147869714795471495727149779-0.218000.018140.08771shorterK562AQR
A3SSCTDNEP1ENSG00000175826.7chr17-7147869714801771478697147954714934471494560.099000.000000.00000longerHepG2U2AF1
A3SSCTDNEP1ENSG00000175826.7chr17-7147869714801771478697147954714934471494560.065000.000000.00000longerK562U2AF1
RICTDNEP1ENSG00000175826.7chr17-714690971475647146909714727071475077147564-0.173000.000070.00854excludedHepG2SFPQ
RICTDNEP1ENSG00000175826.7chr17-714690971475647146909714727071475077147564-0.120000.000270.03954excludedK562DDX55
RICTDNEP1ENSG00000175826.7chr17-714690971475647146909714727071475077147564-0.056000.001840.09841excludedHepG2HNRNPL
RICTDNEP1ENSG00000175826.7chr17-714690971475647146909714727071475077147564-0.097000.000000.00066excludedHepG2NOL12
RICTDNEP1ENSG00000175826.7chr17-714690971475647146909714727071475077147564-0.052000.001570.03610excludedHepG2SRSF1
RICTDNEP1ENSG00000175826.7chr17-7146909714756471469097147270714750771475640.063000.000100.00160includedHepG2U2AF1
RICTDNEP1ENSG00000175826.7chr17-7146909714756471469097147270714750771475640.055000.000010.00025includedHepG2RBM22
RICTDNEP1ENSG00000175826.7chr17-7146909714756471469097147270714750771475640.058000.000000.00001includedHepG2HNRNPK
RICTDNEP1ENSG00000175826.7chr17-7146909714756471469097147270714750771475640.071000.000020.00039includedK562EFTUD2
RICTDNEP1ENSG00000175826.7chr17-714690971475647146909714727071475077147564-0.127000.000990.07767excludedHepG2RBFOX2
MXECTDNEP1ENSG00000175826.7chr17-714742071475647147611714765571469687147270714786971479540.108000.000000.000001includedK562AQR
MXECTDNEP1ENSG00000175826.7chr17-714750771475977147611714771171469097147270714786971479540.395000.000560.005491includedK562AQR
MXECTDNEP1ENSG00000175826.7chr17-714750771475977147611714776171469097147270714786971479540.275000.013150.078951includedK562AQR
MXECTDNEP1ENSG00000175826.7chr17-714750771475977147611714765571469097147270714786971479540.672000.000000.000001includedK562AQR
MXECTDNEP1ENSG00000175826.7chr17-714750771475647147611714765571469097147270714786971479540.119000.000000.000001includedK562AQR
MXECTDNEP1ENSG00000175826.7chr17-714750771475797147611714771171469097147270714786971479540.310000.004240.031301includedK562AQR
MXECTDNEP1ENSG00000175826.7chr17-714750771475797147611714765571469097147270714786971479540.606000.000000.000001includedK562AQR
MXECTDNEP1ENSG00000175826.7chr17-71477927147954714934471494567147507714756471495727149689-0.150000.000000.000002includedK562AQR
MXECTDNEP1ENSG00000175826.7chr17-71495727149689715010971501817147869714795471503827150501-0.163000.000000.000002includedK562AQR
MXECTDNEP1ENSG00000175826.7chr17-71495727149689715010971501817147869714795471503827150501-0.137000.000000.000002includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CTDNEP1 is not avaliable on ENCORE database.