CPT1B

General Information

Gene Name       : CPT1B
Gene ID             : ENSG00000205560.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CPT1B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CPT1BENSG00000205560.1213.2816.6514.96ENCSR000AEF
HepG2CPT1BENSG00000205560.1214.038.4011.21ENCSR985KAT
K562CPT1BENSG00000205560.121.471.721.59ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CPT1B is not avaliable on ENCORE database.



Proteins bound to RNA
  • CPT1B RNA is bound by 12 proteins.  







eCLIP assay for CPT1B is not avaliable on ENCORE database.





12 proteins are bound to CPT1B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr225101204051012060-3'-UTR,CDS,intron-Distal,intron-Proximal4.073113.99014HepG2PABPN1
chr225101225551012284-3'-UTR,intron-Distal3.906383.02457HepG2BCLAF1
chr225101496851015014-5'-UTR,CDS,intron-Distal,intron-Proximal4.578283.02297K562DDX24
chr225101743651017473-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.660684.41267HepG2PPIG
chr225101466951014736-5'-UTR,CDS,intron-Distal4.057414.23295HepG2GRWD1
chr225101742751017500-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.402245.64460HepG2GRWD1
chr225101496751015004-5'-UTR,CDS,intron-Distal,intron-Proximal4.843605.56813HepG2PPIG
chr225101754151017590-3'-UTR,5'-UTR,intron-Distal3.029813.20279HepG2LSM11
chr225101752051017603-3'-UTR,5'-UTR,intron-Distal3.818913.66700HepG2SRSF1
chr225101749751017590-3'-UTR,5'-UTR,intron-Distal3.458915.54641HepG2PPIG
chr225101785451017870-5'-UTR,CDS,intron-Distal,intron-Proximal3.229343.52724HepG2PABPN1
chr225101766151017685-5'-UTR,CDS,intron-Distal,intron-Proximal3.678676.41974HepG2PPIG
chr225101785951017931-5'-UTR,CDS,intron-Distal,intron-Proximal3.335128.23663HepG2BCLAF1
chr225101785951017917-5'-UTR,CDS,intron-Distal,intron-Proximal5.0511215.33327HepG2PPIG
chr225101496551015031-5'-UTR,CDS,intron-Distal,intron-Proximal4.285015.35719HepG2GRWD1
chr225101758851017682-3'-UTR,5'-UTR,CDS,intron-Distal4.058733.90256HepG2PRPF4
chr225101636351016399-5'-UTR,intron-Distal,intron-Proximal4.368328.63922HepG2PRPF8
chr225101762051017684-5'-UTR,CDS,intron-Distal3.626127.42587HepG2PABPN1
chr225101785451017923-5'-UTR,CDS,intron-Distal,intron-Proximal3.402357.08459HepG2LSM11
chr225101636151016453-5'-UTR,intron-Distal,intron-Proximal3.136394.90700HepG2SF3B4
chr225101762551017661-5'-UTR,CDS,intron-Distal3.069035.41373HepG2PPIG
chr225101742351017495-3'-UTR,5'-UTR,intron-Distal,intron-Proximal5.1256932.72052HepG2PRPF8
chr225101754051017595-3'-UTR,5'-UTR,intron-Distal3.466293.85127HepG2GRWD1
chr225100800851008060-3'-UTR,CDS,intron-Distal4.467985.32242HepG2PABPN1
chr225101065451010689-3'-UTR,CDS,intron-Distal3.430963.32039HepG2PPIG
chr225100975551009826-3'-UTR,CDS,intron-Distal,intron-Proximal4.541818.44604HepG2PRPF8
chr225100875651008819-3'-UTR,CDS,intron-Distal,intron-Proximal3.433054.51483HepG2PABPN1
chr225101292551013012-5'-UTR,CDS,intron-Distal,intron-Proximal4.416535.11007HepG2GRWD1
chr225101063851010712-3'-UTR,CDS,intron-Distal,intron-Proximal3.229826.97440HepG2PABPN1
chr225101506351015109-CDS,intron-Distal,intron-Proximal5.606655.75771HepG2SF3A3
chr225101049251010547-3'-UTR,CDS,intron-Distal,intron-Proximal4.635185.32242HepG2PABPN1
chr225101153451011679-intron-Distal,intron-Proximal3.904803.41442HepG2HNRNPK
chr225101506751015110-intron-Distal,intron-Proximal3.589684.59518HepG2SF3B4
chr225101547151015524-intron-Distal,intron-Proximal4.505715.59044HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CPT1B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CPT1B is not available on ENCORE database.

  • 87 RBPs can affect the levels of CPT1B.  








The Knockdown/knockout RNA-Seq assay for CPT1B is not available on ENCORE database.





87 RBPs can affect the gene expression of CPT1B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CPT1BENSG00000205560.8530.86430347.325600.612006.645705.78630HepG2ACO1
CPT1BENSG00000205560.8362.60400221.669700.709904.723703.46370HepG2ADAR
CPT1BENSG00000205560.8259.00220400.93190-0.630403.254202.68390HepG2AKAP1
CPT1BENSG00000205560.8488.22830348.934500.484502.212901.51860HepG2AKAP8L
CPT1BENSG00000205560.8585.72110428.169800.451903.850103.06570HepG2AUH
CPT1BENSG00000205560.8588.96550294.380401.000407.549905.96250HepG2BCCIP
CPT1BENSG00000205560.8375.20470255.759200.552802.390101.55670HepG2BCLAF1
CPT1BENSG00000205560.8172.50440117.185800.557701.982801.46860HepG2BOP1
CPT1BENSG00000205560.8454.28250315.950500.523802.515001.59120HepG2CCAR1
CPT1BENSG00000205560.8604.69310347.222500.8002011.7970010.61710HepG2CKAP4
CPT1BENSG00000205560.8701.68660400.834000.807705.021003.98570HepG2CNOT7
CPT1BENSG00000205560.8405.62350107.585801.9146015.3095013.85280HepG2CPSF6
CPT1BENSG00000205560.8311.05410227.315800.452402.387201.44560HepG2YBX3
CPT1BENSG00000205560.8626.90890477.068400.394004.258503.37040HepG2DAZAP1
CPT1BENSG00000205560.8530.72220384.016800.466702.537701.93720HepG2DDX3X
CPT1BENSG00000205560.8331.63850215.289100.623203.857202.70820HepG2DHX30
CPT1BENSG00000205560.8471.92460332.289400.506003.251402.52720HepG2DKC1
CPT1BENSG00000205560.8309.27010207.286500.577102.931601.79230HepG2EFTUD2
CPT1BENSG00000205560.8747.67230317.116701.2373015.5954014.25960HepG2EIF2S1
CPT1BENSG00000205560.8305.97370201.851500.600003.001002.06450HepG2EIF3D
CPT1BENSG00000205560.8600.91790350.399700.778105.243704.36410HepG2EIF4A3
CPT1BENSG00000205560.8542.07280341.261700.667503.638902.85550HepG2EIF4B
CPT1BENSG00000205560.8352.10790243.264700.533402.730401.64550HepG2ESF1
CPT1BENSG00000205560.81448.75230491.647901.5590045.6645043.77970HepG2ETF1
CPT1BENSG00000205560.8585.33410283.582601.045408.541107.27420HepG2FIP1L1
CPT1BENSG00000205560.8288.88620107.764301.422505.548304.11550HepG2FTO
CPT1BENSG00000205560.8428.87030234.530800.870707.267006.03150HepG2FUBP3
CPT1BENSG00000205560.8201.44030332.63920-0.723603.643602.36560HepG2FUS
CPT1BENSG00000205560.8744.82330328.021601.1830014.2334012.78450HepG2G3BP1
CPT1BENSG00000205560.8614.48820348.344300.818807.242705.78990HepG2G3BP2
CPT1BENSG00000205560.8268.06650121.964701.136007.119006.12340HepG2GPKOW
CPT1BENSG00000205560.8241.35500331.57980-0.458203.005001.99010HepG2HDGF
CPT1BENSG00000205560.8487.67390225.355101.1136010.358609.22760HepG2HNRNPA1
CPT1BENSG00000205560.8433.86510250.661200.791405.917504.93240HepG2HNRNPC
CPT1BENSG00000205560.8510.90100332.343300.620304.250903.40020HepG2HNRNPK
CPT1BENSG00000205560.8206.79640434.53750-1.0713013.4948012.11230HepG2HNRNPL
CPT1BENSG00000205560.8232.56490116.392500.998505.575504.71420HepG2HNRNPLL
CPT1BENSG00000205560.8291.07420195.640600.573103.036402.04230HepG2HNRNPM
CPT1BENSG00000205560.8413.35460249.004300.731107.133706.19630HepG2HNRNPU
CPT1BENSG00000205560.8386.68840223.644900.789906.163105.12350HepG2IGF2BP1
CPT1BENSG00000205560.8574.48330333.397500.784906.417205.42720HepG2IGF2BP2
CPT1BENSG00000205560.8320.45680254.350500.333201.959501.32980HepG2ILF2
CPT1BENSG00000205560.8432.34450317.482000.445403.548702.39220HepG2KIF1C
CPT1BENSG00000205560.8233.19650355.77380-0.609403.042502.38410HepG2MATR3
CPT1BENSG00000205560.8339.98140118.688101.5182010.668708.75360HepG2MTPAP
CPT1BENSG00000205560.8603.61900364.133600.729105.516204.63680HepG2NCBP2
CPT1BENSG00000205560.8564.07680324.189900.799006.607905.50000HepG2PABPC4
CPT1BENSG00000205560.8342.00260246.477500.472502.488501.68060HepG2PARN
CPT1BENSG00000205560.8171.52330312.15170-0.863805.940005.10410HepG2PCBP1
CPT1BENSG00000205560.8279.35380184.178900.600903.901802.99860HepG2PRPF4
CPT1BENSG00000205560.8914.57080451.615301.0179016.4499015.16190HepG2PUF60
CPT1BENSG00000205560.8569.94260343.959500.728507.663806.70320HepG2QKI
CPT1BENSG00000205560.898.52310303.83120-1.6247010.061908.77950HepG2RAVER1
CPT1BENSG00000205560.8194.88200330.75040-0.763105.207304.07600HepG2RBM15
CPT1BENSG00000205560.8722.89590410.915900.8148010.281009.42380HepG2RBM22
CPT1BENSG00000205560.8109.46020312.19400-1.5120011.271609.97100HepG2RBM25
CPT1BENSG00000205560.8438.79460329.288200.414102.899602.26990HepG2RECQL
CPT1BENSG00000205560.8367.46500244.722600.586403.124902.40600HepG2RPLP0
CPT1BENSG00000205560.8607.54400298.519001.025107.875206.35380HepG2RPS10
CPT1BENSG00000205560.8275.12500394.48960-0.519902.304701.68890HepG2SF3A3
CPT1BENSG00000205560.8536.82330330.662900.699007.608006.70570HepG2SF3B4
CPT1BENSG00000205560.8203.01450309.98150-0.610602.866701.89250HepG2SMNDC1
CPT1BENSG00000205560.887.97280345.16650-1.9722016.4331015.48620HepG2SRSF1
CPT1BENSG00000205560.8712.73960445.949600.676404.488503.72580HepG2SRSF5
CPT1BENSG00000205560.8768.55700402.911300.9316016.7093015.67100HepG2SSB
CPT1BENSG00000205560.8508.92340350.387300.538403.003101.85310HepG2STIP1
CPT1BENSG00000205560.8434.49190310.321300.485503.600202.97590HepG2TAF15
CPT1BENSG00000205560.8217.49640113.425900.939102.813502.08410HepG2TARDBP
CPT1BENSG00000205560.8839.51870321.079201.386506.337404.79670HepG2TBRG4
CPT1BENSG00000205560.8376.55490285.066400.401502.374901.59870HepG2TIA1
CPT1BENSG00000205560.8551.20920241.971701.1877017.0812016.03150HepG2TIAL1
CPT1BENSG00000205560.8360.41270244.116000.562004.297803.62530HepG2TRIM56
CPT1BENSG00000205560.8528.05060349.851300.593806.273005.29050HepG2UPF1
CPT1BENSG00000205560.8488.23660263.756400.888305.035803.65830HepG2UPF2
CPT1BENSG00000205560.8501.30610359.603100.479203.887502.66600HepG2UTP18
CPT1BENSG00000205560.8222.58680337.76870-0.601704.245903.52920HepG2UTP3
CPT1BENSG00000205560.8176.98440298.83390-0.755703.254301.87600HepG2XRCC5
CPT1BENSG00000205560.8608.65690283.623501.1016010.095808.73120HepG2XRN2
CPT1BENSG00000205560.8327.44150221.912700.561103.501102.15390K562CCDC124
CPT1BENSG00000205560.8105.4687047.396701.153904.164603.19930K562CPSF6
CPT1BENSG00000205560.8117.0864070.251200.736902.114901.31610K562EFTUD2
CPT1BENSG00000205560.8191.39050129.846200.559602.341701.67090K562EIF2S2
CPT1BENSG00000205560.8152.9640075.193701.024403.436902.27370K562EIF3D
CPT1BENSG00000205560.8138.9166060.199401.206304.565603.45520K562FIP1L1
CPT1BENSG00000205560.827.6949057.61730-1.056902.171801.55580K562G3BP2
CPT1BENSG00000205560.885.7979045.256200.922702.424601.67940K562GPKOW
CPT1BENSG00000205560.838.8071090.62140-1.223503.215502.06670K562HNRNPL
CPT1BENSG00000205560.8201.56460118.817500.762404.023002.93720K562HNRNPU
CPT1BENSG00000205560.8109.2855066.717600.711902.412001.32120K562IGF2BP3
CPT1BENSG00000205560.8160.79580229.71640-0.514602.310701.49190K562MBNL1
CPT1BENSG00000205560.893.9541044.173401.088703.389802.41650K562METAP2
CPT1BENSG00000205560.8334.09600209.432100.673702.749001.93560K562PUF60
CPT1BENSG00000205560.896.04470191.61790-0.996504.636303.95660K562PUS1
CPT1BENSG00000205560.8155.7200064.242001.277307.271305.82610K562RBM22
CPT1BENSG00000205560.822.0526054.72150-1.311202.813701.47350K562RBM25
CPT1BENSG00000205560.898.1174059.979200.709902.194201.43410K562SF3B4
CPT1BENSG00000205560.831.2225065.66610-1.072602.573901.88840K562SRSF1
CPT1BENSG00000205560.835.2882068.33150-0.953402.336801.58180K562SYNCRIP
CPT1BENSG00000205560.8109.6856066.463100.722602.254101.61110K562TARDBP
CPT1BENSG00000205560.8142.1186064.109901.148405.517804.29790K562TIA1
CPT1BENSG00000205560.8111.7243062.899600.828702.665501.59690K562TRA2A
CPT1BENSG00000205560.831.3539072.67470-1.212803.742501.59190K562ZNF800
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CPT1B is not available on ENCORE database.





3 RBPs can affect the splicing of CPT1B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RICPT1BENSG00000205560.8chr22-5100729051007850510072905100751051007764510078500.476000.014200.08090includedHepG2U2AF2
RICPT1BENSG00000205560.8chr22-5100729051007850510072905100751051007764510078500.353000.003730.05685includedHepG2TIAL1
RICPT1BENSG00000205560.8chr22-5100958651009968510095865100972151009803510099680.350000.008970.04890includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CPT1B is not avaliable on ENCORE database.