COMMD4

General Information

Gene Name : COMMD4
Gene ID : ENSG00000140365.15
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: COMMD4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	COMMD4	ENSG00000140365.15	11.67	23.32	17.50	ENCSR000AEF
HepG2	COMMD4	ENSG00000140365.15	75.54	35.10	55.32	ENCSR985KAT
K562	COMMD4	ENSG00000140365.15	46.30	29.55	37.92	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for COMMD4 is not avaliable on ENCORE database.

Proteins bound to RNA

COMMD4 RNA is bound by 10 proteins.

CanvasJS.com

eCLIP assay for COMMD4 is not avaliable on ENCORE database.

10 proteins are bound to COMMD4 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	75630401	75630473	+	CDS,intron-Distal,intron-Proximal	3.57389	13.01358	K562	DDX3X
chr15	75632387	75632506	+	3'-UTR,intron-Distal	6.28845	12.83360	HepG2	UPF1
chr15	75632463	75632580	+	3'-UTR,intron-Distal,intron-Proximal	4.86730	10.58184	K562	UPF1
chr15	75632483	75632578	+	3'-UTR,intron-Distal,intron-Proximal	5.52569	9.06009	HepG2	LARP4
chr15	75631355	75631442	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.08630	8.98325	HepG2	PPIG
chr15	75630980	75631027	+	3'-UTR,CDS,intron-Proximal	5.42587	8.55457	HepG2	PPIG
chr15	75632070	75632220	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.88160	7.91835	HepG2	RPS3
chr15	75630503	75630569	+	intron-Distal,intron-Proximal	4.71381	7.76905	K562	GTF2F1
chr15	75630487	75630569	+	intron-Distal,intron-Proximal	5.10907	6.10370	HepG2	PRPF4
chr15	75632378	75632464	+	3'-UTR,intron-Distal	4.06222	5.54091	HepG2	LARP4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 15 entries

eCLIP assay for COMMD4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for COMMD4 is not available on ENCORE database.
53 RBPs can affect the levels of COMMD4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for COMMD4 is not available on ENCORE database.

53 RBPs can affect the gene expression of COMMD4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
COMMD4	ENSG00000140365.11	407.36110	941.38260	-1.20850	28.46200	26.67870	HepG2	AUH
COMMD4	ENSG00000140365.11	241.65460	547.98490	-1.18120	17.23710	15.30500	HepG2	HNRNPA2B1
COMMD4	ENSG00000140365.11	637.68250	1080.83730	-0.76120	13.82580	12.64640	HepG2	ETF1
COMMD4	ENSG00000140365.11	203.77350	504.61770	-1.30820	12.73480	11.22160	HepG2	DDX55
COMMD4	ENSG00000140365.11	35.48450	150.10410	-2.08070	11.99980	10.32030	K562	G3BP2
COMMD4	ENSG00000140365.11	645.82000	353.79870	0.86810	11.07330	9.94850	K562	FXR1
COMMD4	ENSG00000140365.11	581.01980	300.50620	0.95110	9.35790	8.40840	K562	PUS1
COMMD4	ENSG00000140365.11	80.59470	256.53340	-1.67040	10.87900	7.22130	K562	DDX55
COMMD4	ENSG00000140365.11	748.48430	430.35970	0.79830	7.55530	6.45480	HepG2	FXR1
COMMD4	ENSG00000140365.11	719.55170	430.51040	0.74100	6.40720	5.41890	HepG2	MAGOH
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 58 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for COMMD4 is not available on ENCORE database.

17 RBPs can affect the splicing of COMMD4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
A3SS	COMMD4	ENSG00000140365.11	chr15	+	75631548	75631685	75631604	75631685	75631196	75631445	0.19300	0.00000	longer	K562	AQR
A3SS	COMMD4	ENSG00000140365.11	chr15	+	75630362	75630474	75630402	75630474	75628360	75628433	0.07200	0.00000	longer	K562	AQR
A5SS	COMMD4	ENSG00000140365.11	chr15	+	75630695	75630846	75630695	75630761	75630986	75631026	0.29000	0.00000	longer	K562	AQR
A5SS	COMMD4	ENSG00000140365.11	chr15	+	75630263	75630488	75630263	75630474	75630695	75630715	0.19900	0.00000	longer	K562	AQR
A5SS	COMMD4	ENSG00000140365.11	chr15	+	75630695	75630846	75630695	75630761	75630986	75631026	0.25000	0.00103	longer	K562	SF3B4
A5SS	COMMD4	ENSG00000140365.11	chr15	+	75630695	75630846	75630695	75630761	75630986	75631026	0.42700	0.00000	longer	HepG2	U2AF1
RI	COMMD4	ENSG00000140365.11	chr15	+	75630402	75630761	75630402	75630474	75630695	75630761	0.57100	0.00000	included	HepG2	U2AF2
RI	COMMD4	ENSG00000140365.11	chr15	+	75630402	75630761	75630402	75630474	75630695	75630761	0.28000	0.00000	included	HepG2	U2AF1
RI	COMMD4	ENSG00000140365.11	chr15	+	75630402	75630761	75630402	75630474	75630695	75630761	0.39500	0.00000	included	K562	U2AF1
RI	COMMD4	ENSG00000140365.11	chr15	+	75630402	75630761	75630402	75630474	75630695	75630761	0.47200	0.00000	included	K562	U2AF2

Showing 1 to 10 of 32 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

COMMD4

General Information

Functions

Localization

Domains (AlphaFold: COMMD4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for COMMD4 is not avaliable on ENCORE database.

10 proteins are bound to COMMD4 RNA:

eCLIP assay for COMMD4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for COMMD4 is not available on ENCORE database.

53 RBPs can affect the gene expression of COMMD4 :

The Knockdown/knockout RNA-Seq assay for COMMD4 is not available on ENCORE database.

17 RBPs can affect the splicing of COMMD4 :

The Knockdown/knockout RNA-Seq assay for COMMD4 is not avaliable on ENCORE database.