CLTCL1

General Information

Gene Name       : CLTCL1
Gene ID             : ENSG00000070371.15
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CLTCL1)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CLTCL1ENSG00000070371.150.010.050.03ENCSR000AEF
HepG2CLTCL1ENSG00000070371.157.294.095.69ENCSR985KAT
K562CLTCL1ENSG00000070371.153.133.333.23ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CLTCL1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • CLTCL1 RNA is bound by 16 proteins.  







eCLIP assay for CLTCL1 is not avaliable on ENCORE database.





16 proteins are bound to CLTCL1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr221918723019187296-3'-UTR,CDS,intron-Distal,intron-Proximal3.437704.13746HepG2PPIG
chr221920948719209617-3'-UTR,CDS,intron-Distal,intron-Proximal4.198866.23296HepG2BCLAF1
chr221917544519175534-3'-UTR,CDS,intron-Distal,intron-Proximal3.896366.65114HepG2PRPF8
chr221916831119168368-3'-UTR,CDS,intron-Distal,intron-Proximal3.870983.01266HepG2SF3B4
chr221927907119279139-CDS,intron-Distal3.621563.44979HepG2PRPF8
chr221921739819217489-CDS,intron-Distal4.406384.34038HepG2BCLAF1
chr221927907519279130-CDS,intron-Distal3.942173.12843K562PRPF8
chr221921734819217436-CDS,intron-Distal,intron-Proximal3.996853.36385K562UCHL5
chr221924147819241545-CDS,intron-Distal,intron-Proximal3.668163.68471HepG2BCLAF1
chr221920357519203636-CDS,intron-Distal,intron-Proximal3.619065.73990HepG2PRPF8
chr221919800819198059-CDS,intron-Distal,intron-Proximal3.842513.25678HepG2SF3B4
chr221921736619217434-CDS,intron-Distal,intron-Proximal3.297643.34848HepG2PPIG
chr221922000319220111-CDS,intron-Distal4.953165.86613HepG2PPIG
chr221918984219189990-intron-Distal5.7416314.09448HepG2CSTF2T
chr221918986919189973-intron-Distal4.537124.69321HepG2GTF2F1
chr221918987819189970-intron-Distal4.705274.98766K562EWSR1
chr221918979119189977-intron-Distal3.330294.39628K562SAFB2
chr221918991019189975-intron-Distal5.447359.08542K562CSTF2T
chr221918990119190009-intron-Distal4.150305.29754K562AKAP8L
chr221918985619189986-intron-Distal7.4182018.02429K562GTF2F1
chr221918917419189252-intron-Distal3.163673.46580HepG2CSTF2T
chr221918914119189214-intron-Distal4.087613.54095K562FAM120A
chr221918986119189909-intron-Distal4.6883311.15861HepG2FAM120A
chr221918984719189910-intron-Distal5.419096.77594K562FAM120A
chr221918991019189975-intron-Distal6.2210012.43562K562FAM120A
chr221918991919189976-intron-Distal5.475625.05215K562FASTKD2
chr221918989219189977-intron-Distal3.123913.01707K562SLTM
chr221918990919190003-intron-Distal6.2057030.59067HepG2FAM120A
chr221918987819189990-intron-Distal4.940488.06849HepG2PRPF4
chr221918983119189910-intron-Distal4.846535.60464K562CSTF2T
chr221920003019200074-intron-Distal4.565044.07628HepG2PTBP1
chr221918133219181515-intron-Distal4.653163.01321K562LSM11
chr221923009919230236-intron-Distal,intron-Proximal4.114143.49003K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CLTCL1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CLTCL1 is not available on ENCORE database.

  • 63 RBPs can affect the levels of CLTCL1.  








The Knockdown/knockout RNA-Seq assay for CLTCL1 is not available on ENCORE database.





63 RBPs can affect the gene expression of CLTCL1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CLTCL1ENSG00000070371.11666.58270462.194000.528206.124305.29180HepG2ACO1
CLTCL1ENSG00000070371.11621.88280464.334500.421403.796202.91120HepG2AKAP8L
CLTCL1ENSG00000070371.11755.95300573.866200.397503.741702.96530HepG2AUH
CLTCL1ENSG00000070371.11330.92300462.05620-0.481604.155003.37180HepG2CKAP4
CLTCL1ENSG00000070371.11387.31750494.23140-0.351702.408801.71060HepG2DAZAP1
CLTCL1ENSG00000070371.11516.53890327.185300.658704.047803.31310HepG2DDX6
CLTCL1ENSG00000070371.11368.37570288.586400.352101.899801.30550HepG2DNAJC21
CLTCL1ENSG00000070371.11529.93690314.497700.752705.637804.80830HepG2EIF2S1
CLTCL1ENSG00000070371.11636.71170347.540700.873407.626606.56750HepG2EIF4A3
CLTCL1ENSG00000070371.11898.90310658.910400.448005.114104.34210HepG2ETF1
CLTCL1ENSG00000070371.11165.48090281.49300-0.766402.231601.32840HepG2FTO
CLTCL1ENSG00000070371.11466.07700350.703000.410201.998801.40650HepG2FXR1
CLTCL1ENSG00000070371.11431.84160325.302700.408601.929101.36870HepG2G3BP1
CLTCL1ENSG00000070371.11890.17920318.560601.4824021.9453020.32820HepG2GPKOW
CLTCL1ENSG00000070371.11344.70370441.24030-0.356202.471001.54180HepG2HDGF
CLTCL1ENSG00000070371.11464.29640324.061400.518703.110802.38090HepG2HNRNPC
CLTCL1ENSG00000070371.11457.10890304.007600.588303.640402.92800HepG2HNRNPLL
CLTCL1ENSG00000070371.11240.59240321.91980-0.420102.488001.91240HepG2HNRNPU
CLTCL1ENSG00000070371.11670.14800330.653901.0191011.002209.75160HepG2IGF2BP2
CLTCL1ENSG00000070371.11527.92270361.084700.547903.238702.55540HepG2NCBP2
CLTCL1ENSG00000070371.11361.30900490.08040-0.439803.040502.24170HepG2NOL12
CLTCL1ENSG00000070371.11545.71190321.539700.763006.029704.97490HepG2PABPC4
CLTCL1ENSG00000070371.11408.09490320.925400.346601.776101.31830HepG2PTBP1
CLTCL1ENSG00000070371.11343.68360496.63490-0.531104.967004.21960HepG2PUM1
CLTCL1ENSG00000070371.11713.45230496.266100.523604.963904.07930HepG2PUM2
CLTCL1ENSG00000070371.11371.70400470.76910-0.340902.137601.57940HepG2PUS1
CLTCL1ENSG00000070371.11476.52320347.578300.455102.983302.33930HepG2QKI
CLTCL1ENSG00000070371.11680.33170357.162300.9296013.2504012.22660HepG2NELFE
CLTCL1ENSG00000070371.11436.40620332.642400.391602.428601.84630HepG2RECQL
CLTCL1ENSG00000070371.11229.32930344.57160-0.587402.883501.54650HepG2SART3
CLTCL1ENSG00000070371.11440.53360334.131700.398702.538301.96800HepG2SF3B4
CLTCL1ENSG00000070371.11448.85090348.758300.363902.213201.77750HepG2SRSF1
CLTCL1ENSG00000070371.11450.71850283.731000.667606.758205.96420HepG2SRSF9
CLTCL1ENSG00000070371.11710.19150540.024700.395103.708803.13430HepG2SSB
CLTCL1ENSG00000070371.11374.23820518.68760-0.470902.697101.43050HepG2SSRP1
CLTCL1ENSG00000070371.111352.71410293.566302.2040044.7212042.65150HepG2SUPV3L1
CLTCL1ENSG00000070371.11535.53050313.469700.772508.593207.69450HepG2TAF15
CLTCL1ENSG00000070371.11517.05480312.851600.724707.225706.48670HepG2TIAL1
CLTCL1ENSG00000070371.11255.45970363.05980-0.507102.451901.85790HepG2U2AF1
CLTCL1ENSG00000070371.11429.12720268.755300.675003.017101.96840HepG2UPF2
CLTCL1ENSG00000070371.11619.15310324.020400.9341015.0629013.69900HepG2ZC3H8
CLTCL1ENSG00000070371.11610.79700457.388000.417204.135003.50330HepG2ZNF622
CLTCL1ENSG00000070371.11296.33690556.28350-0.9086011.5976010.53010K562AGGF1
CLTCL1ENSG00000070371.11319.19750578.82990-0.858708.917607.67150K562AKAP8L
CLTCL1ENSG00000070371.11370.06940523.83290-0.501303.151402.53280K562AQR
CLTCL1ENSG00000070371.11418.39620607.31620-0.537605.163003.87130K562ATP5C1
CLTCL1ENSG00000070371.11116.52500188.87040-0.696802.734201.86620K562BOP1
CLTCL1ENSG00000070371.11206.21070323.86080-0.651303.985602.43510K562CIRBP
CLTCL1ENSG00000070371.11381.78240622.91450-0.706308.493006.80300K562DKC1
CLTCL1ENSG00000070371.11135.92940220.29190-0.696602.919502.19010K562G3BP2
CLTCL1ENSG00000070371.11445.41280246.401200.854007.373006.44480K562HNRNPC
CLTCL1ENSG00000070371.11177.28890301.77370-0.767404.522802.91140K562HNRNPK
CLTCL1ENSG00000070371.11400.66300614.31230-0.616604.187703.14670K562KIF1C
CLTCL1ENSG00000070371.11387.36040588.02440-0.602204.710403.19590K562MAK16
CLTCL1ENSG00000070371.11408.64110688.18090-0.752008.092806.37320K562MBNL1
CLTCL1ENSG00000070371.11435.17970334.382700.380002.500701.73160K562MTPAP
CLTCL1ENSG00000070371.11245.72680482.36240-0.973106.892605.26940K562NAA15
CLTCL1ENSG00000070371.11210.10530310.48280-0.563403.410201.90730K562PCBP1
CLTCL1ENSG00000070371.11147.00450282.54620-0.942606.284504.79320K562PCBP2
CLTCL1ENSG00000070371.11702.16590377.875800.893808.673607.20460K562PCBP3
CLTCL1ENSG00000070371.11515.33940289.869500.830008.496607.12090K562POLR2G
CLTCL1ENSG00000070371.11135.69760260.37750-0.940205.339604.29680K562PRPF8
CLTCL1ENSG00000070371.11251.77520574.09990-1.1892012.8280011.70470K562PUS1
CLTCL1ENSG00000070371.11320.49220559.32460-0.803408.919307.88030K562RBM15
CLTCL1ENSG00000070371.11545.73200311.304900.809807.540605.65520K562NELFE
CLTCL1ENSG00000070371.11153.18450283.23290-0.886702.869701.63560K562SF1
CLTCL1ENSG00000070371.11136.13850229.03310-0.750504.416903.32570K562SF3B4
CLTCL1ENSG00000070371.11146.39600302.49910-1.047108.348407.12650K562SRSF1
CLTCL1ENSG00000070371.11300.02380212.493400.497602.219501.38970K562TIAL1
CLTCL1ENSG00000070371.11135.56960213.49870-0.655202.731501.64700K562U2AF1
CLTCL1ENSG00000070371.11104.99960220.50940-1.070507.361506.05720K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CLTCL1 is not available on ENCORE database.





1 RBPs can affect the splicing of CLTCL1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECLTCL1ENSG00000070371.11chr22-1924532719245390192415561924175019263145192633530.429000.000270.04502includedK562MATR3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CLTCL1 is not avaliable on ENCORE database.