CCDC112

General Information

Gene Name       : CCDC112
Gene ID             : ENSG00000164221.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCDC112)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCDC112ENSG00000164221.121.551.091.32ENCSR000AEF
HepG2CCDC112ENSG00000164221.121.543.832.69ENCSR985KAT
K562CCDC112ENSG00000164221.1210.3710.3010.34ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC112 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCDC112 RNA is bound by 2 proteins.  







eCLIP assay for CCDC112 is not avaliable on ENCORE database.





2 proteins are bound to CCDC112 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5114611193114611297-CDS,intron-Distal3.047834.00731K562UCHL5
chr5114611176114611304-CDS,intron-Distal,intron-Proximal3.646364.79276K562ZNF622
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCDC112 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC112 is not available on ENCORE database.

  • 62 RBPs can affect the levels of CCDC112.  








The Knockdown/knockout RNA-Seq assay for CCDC112 is not available on ENCORE database.





62 RBPs can affect the gene expression of CCDC112 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC112ENSG00000164221.850.52100222.98250-2.1420017.9002016.57400HepG2BOP1
CCDC112ENSG00000164221.8188.25930306.47480-0.703002.171801.31630HepG2CCAR1
CCDC112ENSG00000164221.832.58720108.72920-1.738406.630205.44760HepG2CNOT7
CCDC112ENSG00000164221.8106.18780184.64840-0.798204.615803.69580HepG2DAZAP1
CCDC112ENSG00000164221.8194.6814092.631201.071404.132503.20770HepG2DDX55
CCDC112ENSG00000164221.862.95170100.59450-0.676202.177601.58620HepG2DNAJC2
CCDC112ENSG00000164221.8172.04160109.823200.647502.636001.49860HepG2EIF2S2
CCDC112ENSG00000164221.860.76730113.33760-0.899302.808802.16500HepG2EIF4A3
CCDC112ENSG00000164221.8205.72980110.321400.898902.336701.70200HepG2EIF4B
CCDC112ENSG00000164221.896.76590174.48540-0.850503.926902.96690HepG2EIF4G2
CCDC112ENSG00000164221.8291.35890146.164700.995105.263204.22960HepG2FIP1L1
CCDC112ENSG00000164221.8161.78450232.05440-0.520401.903101.36590HepG2GPKOW
CCDC112ENSG00000164221.857.55790113.98080-0.985703.159902.42520HepG2HNRNPC
CCDC112ENSG00000164221.8143.88440225.85480-0.650502.399101.50290HepG2MTPAP
CCDC112ENSG00000164221.864.09140131.66090-1.038603.306402.46770HepG2PRPF4
CCDC112ENSG00000164221.8145.1784071.412801.023503.484002.58750HepG2PRPF8
CCDC112ENSG00000164221.8163.40960104.998400.638002.590202.05760HepG2PTBP1
CCDC112ENSG00000164221.8123.44110174.77280-0.501701.831401.33300HepG2PUF60
CCDC112ENSG00000164221.8131.87610185.51990-0.492402.196101.65530HepG2PUM1
CCDC112ENSG00000164221.863.52240113.71840-0.840102.734602.11320HepG2QKI
CCDC112ENSG00000164221.8263.26930175.926600.581503.083902.18270HepG2RBM15
CCDC112ENSG00000164221.8295.66000159.716700.888306.479105.76660HepG2RBM22
CCDC112ENSG00000164221.8166.35540108.831900.612102.346601.77260HepG2RECQL
CCDC112ENSG00000164221.8137.8154070.637600.964102.941402.13330HepG2RRP9
CCDC112ENSG00000164221.8100.12790219.19540-1.130406.532205.48520HepG2SF3B1
CCDC112ENSG00000164221.878.62680129.37540-0.718502.361101.48280HepG2SMNDC1
CCDC112ENSG00000164221.8307.75180180.401100.770506.206005.53810HepG2SRFBP1
CCDC112ENSG00000164221.8148.3490092.829300.676202.799002.24490HepG2SRSF9
CCDC112ENSG00000164221.889.95640156.64310-0.800203.586603.01960HepG2SSB
CCDC112ENSG00000164221.893.51860215.84970-1.206707.185406.09390HepG2TARDBP
CCDC112ENSG00000164221.863.97980110.03690-0.782302.611202.12270HepG2TIAL1
CCDC112ENSG00000164221.865.56750111.00420-0.759602.731202.16930HepG2TRIM56
CCDC112ENSG00000164221.8208.32660125.048700.736302.931402.28580HepG2U2AF1
CCDC112ENSG00000164221.8180.24890116.356400.631302.824901.76810HepG2UTP18
CCDC112ENSG00000164221.8260.32080124.892601.059503.498702.05790HepG2XRCC5
CCDC112ENSG00000164221.8180.79380124.506100.538002.420901.89940HepG2ZNF622
CCDC112ENSG00000164221.8205.89880126.890300.698302.850301.53460HepG2ZRANB2
CCDC112ENSG00000164221.8576.12650442.571500.380402.950202.36660K562AGGF1
CCDC112ENSG00000164221.8294.42580402.98420-0.452802.193401.66060K562AQR
CCDC112ENSG00000164221.8641.69670483.197100.409203.461702.42930K562ATP5C1
CCDC112ENSG00000164221.8315.75700508.06600-0.686205.117803.92050K562BOP1
CCDC112ENSG00000164221.8380.66250540.20500-0.505003.690102.78580K562CPSF6
CCDC112ENSG00000164221.8781.36620519.257700.589405.423403.30570K562DDX19B
CCDC112ENSG00000164221.81008.02880616.330200.709707.434906.43630K562DDX47
CCDC112ENSG00000164221.8717.60720495.538600.534105.885904.54330K562DKC1
CCDC112ENSG00000164221.8122.51100200.12790-0.708002.798001.51050K562EEF2
CCDC112ENSG00000164221.8188.15200294.81580-0.647904.184703.32730K562EIF2S2
CCDC112ENSG00000164221.8316.11470115.377301.454008.926707.08080K562EIF3A
CCDC112ENSG00000164221.8415.93130549.67460-0.402202.270101.49250K562FMR1
CCDC112ENSG00000164221.8205.73020299.38860-0.541303.131702.49380K562FXR1
CCDC112ENSG00000164221.8624.50450386.518400.692104.729303.74850K562G3BP2
CCDC112ENSG00000164221.8166.17860302.27740-0.863105.703504.87740K562HNRNPC
CCDC112ENSG00000164221.8177.80910269.94990-0.602403.048301.84530K562HNRNPF
CCDC112ENSG00000164221.8714.67220488.717900.548202.730001.91050K562KIF1C
CCDC112ENSG00000164221.8266.31250370.80850-0.477602.359501.58030K562MAGOH
CCDC112ENSG00000164221.8243.60310370.09440-0.603402.504701.63040K562MATR3
CCDC112ENSG00000164221.8722.22800547.488400.399502.844201.91900K562MBNL1
CCDC112ENSG00000164221.8285.55190503.43550-0.818107.557006.07650K562METAP2
CCDC112ENSG00000164221.8235.38550329.97360-0.487302.354501.45710K562PCBP2
CCDC112ENSG00000164221.8126.87480188.14480-0.568401.999401.35570K562PRPF8
CCDC112ENSG00000164221.8230.49990360.24490-0.644202.099201.50640K562PTBP1
CCDC112ENSG00000164221.8640.32540444.990300.524904.904304.13570K562RBM15
CCDC112ENSG00000164221.8339.30440191.621000.824204.715103.64590K562RPS19
CCDC112ENSG00000164221.8289.75110511.89460-0.821002.898701.65550K562SF1
CCDC112ENSG00000164221.8307.50380434.32480-0.498203.463102.55600K562SF3A3
CCDC112ENSG00000164221.8274.08010402.17620-0.553203.947302.92040K562SF3B4
CCDC112ENSG00000164221.8230.37980353.13190-0.616203.294102.52650K562SRSF1
CCDC112ENSG00000164221.8161.80180357.45330-1.143507.803806.53990K562TARDBP
CCDC112ENSG00000164221.8545.44760415.251900.393403.382502.45560K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC112 is not available on ENCORE database.





14 RBPs can affect the splicing of CCDC112 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCDC112ENSG00000164221.8chr5-114605399114605495114604578114604697114606909114607323-0.237000.000980.02052excludedK562SF3B4
SECCDC112ENSG00000164221.8chr5-114605399114605495114604578114604697114606909114607323-0.253000.000010.00060excludedK562AKAP8L
SECCDC112ENSG00000164221.8chr5-1146053991146054951146045781146046971146069091146073230.321000.000070.00915includedHepG2TBRG4
SECCDC112ENSG00000164221.8chr5-114605399114605495114604578114604697114606909114607323-0.311000.001410.01884excludedHepG2U2AF2
SECCDC112ENSG00000164221.8chr5-114605399114605495114604578114604697114606909114607323-0.288000.000000.00000excludedK562PUS1
SECCDC112ENSG00000164221.8chr5-114605399114605495114604578114604697114606909114607323-0.242000.000430.01143excludedK562U2AF1
SECCDC112ENSG00000164221.8chr5-114605399114605495114604578114604697114606909114607323-0.270000.000000.00003excludedK562UTP18
SECCDC112ENSG00000164221.8chr5-114605399114605495114604578114604697114606909114607323-0.392000.000000.00000excludedK562U2AF2
SECCDC112ENSG00000164221.8chr5-1146053991146054951146045781146046971146069091146073230.225000.002440.07411includedK562HNRNPU
SECCDC112ENSG00000164221.8chr5-114605399114605495114604578114604697114606909114607323-0.248000.000000.00013excludedK562RBM15
SECCDC112ENSG00000164221.8chr5-114605399114605495114604578114604697114606909114607323-0.382000.000000.00000excludedK562AGGF1
SECCDC112ENSG00000164221.8chr5-114606909114607323114605399114605495114610912114611303-0.057000.002600.08297excludedK562SF3B1
MXECCDC112ENSG00000164221.8chr5-1146053991146054951146069091146073231146045781146046971146109121146113030.154000.000600.022131includedK562RBM15
MXECCDC112ENSG00000164221.8chr5-1146053991146054951146069091146073231146045781146046971146109121146113030.182000.000050.001761includedK562PUS1
MXECCDC112ENSG00000164221.8chr5-1146053991146054951146069091146073231146045781146046971146109121146113030.245000.000000.000001includedK562AGGF1
MXECCDC112ENSG00000164221.8chr5-114605399114605495114606909114607323114604578114604697114610912114611303-0.225000.003530.049882includedK562SRSF1
MXECCDC112ENSG00000164221.8chr5-1146053991146054951146069091146073231146045781146046971146109121146113030.201000.000000.000771includedK562UTP18
MXECCDC112ENSG00000164221.8chr5-114605399114605495114606909114607323114604578114604697114610912114611303-0.090000.004760.084902includedK562SBDS
MXECCDC112ENSG00000164221.8chr5-114605399114605495114606909114607323114604578114604697114610912114611303-0.109000.000510.020072includedK562PPIL4
MXECCDC112ENSG00000164221.8chr5-1146053991146054951146069091146073231146045781146046971146109121146113030.185000.000060.004991includedK562AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCDC112 is not avaliable on ENCORE database.