CCDC112

General Information

Gene Name : CCDC112
Gene ID : ENSG00000164221.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CCDC112)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CCDC112	ENSG00000164221.12	1.55	1.09	1.32	ENCSR000AEF
HepG2	CCDC112	ENSG00000164221.12	1.54	3.83	2.69	ENCSR985KAT
K562	CCDC112	ENSG00000164221.12	10.37	10.30	10.34	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CCDC112 is not avaliable on ENCORE database.

Proteins bound to RNA

CCDC112 RNA is bound by 2 proteins.

CanvasJS.com

eCLIP assay for CCDC112 is not avaliable on ENCORE database.

2 proteins are bound to CCDC112 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	114611176	114611304	-	CDS,intron-Distal,intron-Proximal	3.64636	4.79276	K562	ZNF622
chr5	114611193	114611297	-	CDS,intron-Distal	3.04783	4.00731	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 2 of 2 entries

eCLIP assay for CCDC112 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CCDC112 is not available on ENCORE database.
62 RBPs can affect the levels of CCDC112.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CCDC112 is not available on ENCORE database.

62 RBPs can affect the gene expression of CCDC112 :

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Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CCDC112	ENSG00000164221.8	50.52100	222.98250	-2.14200	17.90020	16.57400	HepG2	BOP1
CCDC112	ENSG00000164221.8	316.11470	115.37730	1.45400	8.92670	7.08080	K562	EIF3A
CCDC112	ENSG00000164221.8	161.80180	357.45330	-1.14350	7.80380	6.53990	K562	TARDBP
CCDC112	ENSG00000164221.8	1008.02880	616.33020	0.70970	7.43490	6.43630	K562	DDX47
CCDC112	ENSG00000164221.8	93.51860	215.84970	-1.20670	7.18540	6.09390	HepG2	TARDBP
CCDC112	ENSG00000164221.8	285.55190	503.43550	-0.81810	7.55700	6.07650	K562	METAP2
CCDC112	ENSG00000164221.8	295.66000	159.71670	0.88830	6.47910	5.76660	HepG2	RBM22
CCDC112	ENSG00000164221.8	307.75180	180.40110	0.77050	6.20600	5.53810	HepG2	SRFBP1
CCDC112	ENSG00000164221.8	100.12790	219.19540	-1.13040	6.53220	5.48520	HepG2	SF3B1
CCDC112	ENSG00000164221.8	32.58720	108.72920	-1.73840	6.63020	5.44760	HepG2	CNOT7
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 69 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CCDC112 is not available on ENCORE database.

14 RBPs can affect the splicing of CCDC112 :

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Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CCDC112	ENSG00000164221.8	chr5	-	114605399	114605495			114604578	114604697	114606909	114607323	-0.28800	0.00000	0.00000	excluded	K562	PUS1
SE	CCDC112	ENSG00000164221.8	chr5	-	114605399	114605495			114604578	114604697	114606909	114607323	-0.27000	0.00000	0.00003	excluded	K562	UTP18
SE	CCDC112	ENSG00000164221.8	chr5	-	114605399	114605495			114604578	114604697	114606909	114607323	-0.39200	0.00000	0.00000	excluded	K562	U2AF2
SE	CCDC112	ENSG00000164221.8	chr5	-	114605399	114605495			114604578	114604697	114606909	114607323	-0.24800	0.00000	0.00013	excluded	K562	RBM15
SE	CCDC112	ENSG00000164221.8	chr5	-	114605399	114605495			114604578	114604697	114606909	114607323	-0.38200	0.00000	0.00000	excluded	K562	AGGF1
MXE	CCDC112	ENSG00000164221.8	chr5	-	114605399	114605495	114606909	114607323	114604578	114604697	114610912	114611303	0.24500	0.00000	0.00000	1included	K562	AGGF1
MXE	CCDC112	ENSG00000164221.8	chr5	-	114605399	114605495	114606909	114607323	114604578	114604697	114610912	114611303	0.20100	0.00000	0.00077	1included	K562	UTP18
SE	CCDC112	ENSG00000164221.8	chr5	-	114605399	114605495			114604578	114604697	114606909	114607323	-0.25300	0.00001	0.00060	excluded	K562	AKAP8L
MXE	CCDC112	ENSG00000164221.8	chr5	-	114605399	114605495	114606909	114607323	114604578	114604697	114610912	114611303	0.18200	0.00005	0.00176	1included	K562	PUS1
MXE	CCDC112	ENSG00000164221.8	chr5	-	114605399	114605495	114606909	114607323	114604578	114604697	114610912	114611303	0.18500	0.00006	0.00499	1included	K562	AKAP8L

Showing 1 to 10 of 20 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CCDC112

General Information

Functions

Localization

Domains (AlphaFold: CCDC112)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CCDC112 is not avaliable on ENCORE database.

2 proteins are bound to CCDC112 RNA:

eCLIP assay for CCDC112 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CCDC112 is not available on ENCORE database.

62 RBPs can affect the gene expression of CCDC112 :

The Knockdown/knockout RNA-Seq assay for CCDC112 is not available on ENCORE database.

14 RBPs can affect the splicing of CCDC112 :

The Knockdown/knockout RNA-Seq assay for CCDC112 is not avaliable on ENCORE database.