CALML4

General Information

Gene Name       : CALML4
Gene ID             : ENSG00000129007.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CALML4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CALML4ENSG00000129007.1411.4410.8111.12ENCSR000AEF
HepG2CALML4ENSG00000129007.1410.259.7510.00ENCSR985KAT
K562CALML4ENSG00000129007.1415.0616.4015.73ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CALML4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CALML4 RNA is bound by 11 proteins.  







eCLIP assay for CALML4 is not avaliable on ENCORE database.





11 proteins are bound to CALML4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr156848618868486279-3'-UTR,intron-Distal4.205794.10264K562ZNF622
chr156849201868492105-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.393095.54639K562CSTF2T
chr156848630868486408-3'-UTR,CDS,intron-Distal3.289335.39086K562UCHL5
chr156849202968492144-5'-UTR,intron-Distal,intron-Proximal3.847747.14301HepG2FAM120A
chr156849778168497867-5'-UTR,intron-Distal,intron-Proximal3.720203.19850K562FUS
chr156849202368492135-5'-UTR,intron-Distal,intron-Proximal3.881804.98031HepG2PRPF4
chr156849202468492141-5'-UTR,intron-Distal,intron-Proximal6.0813713.02633K562GTF2F1
chr156849741568497474-CDS,intron-Distal,intron-Proximal3.160703.67092K562PRPF8
chr156849730568497393-intron-Distal,intron-Proximal3.874263.19850K562FUS
chr156849179668491850-intron-Distal,intron-Proximal4.859905.24810K562GTF2F1
chr156849626268496355-intron-Distal4.849064.82195HepG2XPO5
chr156849679668496924-intron-Distal4.001143.19850K562FUS
chr156849481668494945-intron-Distal3.181713.29440K562ILF3
chr156849016968490281-intron-Distal,intron-Proximal3.017053.17504K562CSTF2T
chr156849330468493370-intron-Distal3.283673.77567K562NONO
chr156849704968497183-intron-Distal3.965363.19850K562FUS
chr156849230568492362-intron-Distal,intron-Proximal3.797136.50512K562GTF2F1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CALML4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CALML4 is not available on ENCORE database.

  • 58 RBPs can affect the levels of CALML4.  








The Knockdown/knockout RNA-Seq assay for CALML4 is not available on ENCORE database.





58 RBPs can affect the gene expression of CALML4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CALML4ENSG00000129007.1040.10020127.67310-1.670806.851706.05640HepG2AKAP1
CALML4ENSG00000129007.10101.37620167.50250-0.724503.250002.51540HepG2AUH
CALML4ENSG00000129007.10146.6718089.042100.719902.383201.55110HepG2BCLAF1
CALML4ENSG00000129007.10224.67460136.466200.719202.909201.90850HepG2CCAR1
CALML4ENSG00000129007.10238.57740100.360401.249208.035606.77080HepG2CIRBP
CALML4ENSG00000129007.1042.9390091.91780-1.098102.955302.16200HepG2CNOT7
CALML4ENSG00000129007.1052.64540100.90840-0.938702.785502.09640HepG2CPSF6
CALML4ENSG00000129007.1076.56410148.19920-0.952804.302903.53300HepG2CELF1
CALML4ENSG00000129007.10248.36770105.364301.237008.750107.61500HepG2DDX21
CALML4ENSG00000129007.1053.60140105.07840-0.971102.808002.18570HepG2DDX6
CALML4ENSG00000129007.10187.3582094.794800.982805.567404.66790HepG2DKC1
CALML4ENSG00000129007.1053.47990100.98450-0.917102.618502.04150HepG2EIF2S1
CALML4ENSG00000129007.1092.94540150.58970-0.696202.401801.64080HepG2EIF4G2
CALML4ENSG00000129007.1040.0665084.39380-1.074702.546101.42650HepG2FAM120A
CALML4ENSG00000129007.1073.79170134.80170-0.869302.978401.82190HepG2FUS
CALML4ENSG00000129007.10235.13940110.924101.083806.382705.02140HepG2G3BP2
CALML4ENSG00000129007.10238.40270114.370101.059605.747404.84700HepG2GPKOW
CALML4ENSG00000129007.10154.5595070.357501.135304.967204.13460HepG2HNRNPA1
CALML4ENSG00000129007.10151.2291078.256700.950303.656402.86820HepG2HNRNPC
CALML4ENSG00000129007.10212.15550105.825401.003305.153304.22210HepG2HNRNPK
CALML4ENSG00000129007.10264.35740109.147101.276108.713507.66340HepG2HNRNPLL
CALML4ENSG00000129007.10157.1617090.288200.799503.447802.39440HepG2HNRNPM
CALML4ENSG00000129007.10334.41590144.142501.214008.794707.30940HepG2LARP4
CALML4ENSG00000129007.10202.56830112.668200.846203.782303.01550HepG2MAGOH
CALML4ENSG00000129007.10186.61480105.923200.816903.863002.91090HepG2MSI2
CALML4ENSG00000129007.10186.28320111.353900.742202.414301.51520HepG2MTPAP
CALML4ENSG00000129007.10183.9522096.792400.926304.092803.18840HepG2NSUN2
CALML4ENSG00000129007.10205.12980103.379200.988506.602105.72570HepG2PCBP1
CALML4ENSG00000129007.10125.2931069.338000.853503.477202.66080HepG2PPIL4
CALML4ENSG00000129007.10385.45470150.821301.3536015.1160013.87370HepG2PUF60
CALML4ENSG00000129007.10206.85190103.393001.000405.945004.99060HepG2RBM25
CALML4ENSG00000129007.10175.96320109.056800.690103.109602.46130HepG2RECQL
CALML4ENSG00000129007.10122.6744069.232300.825203.239602.55310HepG2SAFB2
CALML4ENSG00000129007.10240.86700108.024001.156807.277606.18060HepG2SF3B1
CALML4ENSG00000129007.10192.06420102.775600.902005.164604.43810HepG2TAF15
CALML4ENSG00000129007.10169.36620106.430800.670102.440401.75350HepG2TARDBP
CALML4ENSG00000129007.10123.2298076.213000.693102.485201.94440HepG2TRIM56
CALML4ENSG00000129007.1065.56900159.20380-1.279802.787601.79310HepG2U2AF2
CALML4ENSG00000129007.10240.49690157.741900.608403.443902.67840HepG2UPF1
CALML4ENSG00000129007.10236.6794098.730401.261307.260006.09700HepG2XRN2
CALML4ENSG00000129007.10254.53100376.14920-0.563503.544502.80190K562AKAP8L
CALML4ENSG00000129007.10292.45090514.97180-0.816306.950906.09000K562AQR
CALML4ENSG00000129007.10267.08420430.33020-0.688103.753802.84090K562CPSF6
CALML4ENSG00000129007.10411.54290541.95710-0.397102.960502.22060K562EIF2S2
CALML4ENSG00000129007.10289.54750560.32030-0.9525010.188008.44490K562FIP1L1
CALML4ENSG00000129007.10356.66760236.997200.589604.101703.38660K562FXR1
CALML4ENSG00000129007.10535.97440269.984600.989209.568107.22090K562HNRNPK
CALML4ENSG00000129007.10896.83110653.597400.456304.098702.78630K562HNRNPL
CALML4ENSG00000129007.10331.09590446.69430-0.432002.982402.05540K562HNRNPU
CALML4ENSG00000129007.10562.06690759.69980-0.434703.088902.25030K562HSPD1
CALML4ENSG00000129007.10378.08500284.075500.412302.262801.49900K562MAGOH
CALML4ENSG00000129007.10169.35910283.51000-0.743304.981103.70070K562MATR3
CALML4ENSG00000129007.10439.80850313.467700.488502.088601.34470K562NAA15
CALML4ENSG00000129007.10364.61510252.769800.528502.932601.92660K562PCBP2
CALML4ENSG00000129007.10938.00210723.531800.374403.566001.94240K562PNPT1
CALML4ENSG00000129007.10476.56720636.04930-0.416502.716501.90490K562PPIG
CALML4ENSG00000129007.10191.88020330.36140-0.783804.709503.73350K562PRPF8
CALML4ENSG00000129007.10331.04230201.147300.718705.167903.26350K562RBM25
CALML4ENSG00000129007.10204.74740380.19210-0.892903.455101.93800K562SFPQ
CALML4ENSG00000129007.10406.16660273.837500.568703.616602.80340K562TARDBP
CALML4ENSG00000129007.10186.61210313.06370-0.746404.161902.99360K562TIAL1
CALML4ENSG00000129007.10303.40690474.33700-0.644705.340804.10320K562WDR3
CALML4ENSG00000129007.10421.68480238.849400.820003.790201.86320K562XRCC6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CALML4 is not available on ENCORE database.





2 RBPs can affect the splicing of CALML4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECALML4ENSG00000129007.10chr15-6849187868492019684897776848996668497458684974890.514000.000200.00560includedK562SRSF1
SECALML4ENSG00000129007.10chr15-684918786849201968489777684899666849745868497489-0.281000.000050.05547excludedK562TROVE2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CALML4 is not avaliable on ENCORE database.