ATG3

General Information

Gene Name : ATG3
Gene ID : ENSG00000144848.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ATG3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ATG3	ENSG00000144848.10	61.27	46.66	53.97	ENCSR000AEF
HepG2	ATG3	ENSG00000144848.10	27.55	32.49	30.02	ENCSR985KAT
K562	ATG3	ENSG00000144848.10	52.93	56.31	54.62	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ATG3 is not avaliable on ENCORE database.

Proteins bound to RNA

ATG3 RNA is bound by 13 proteins.

eCLIP assay for ATG3 is not avaliable on ENCORE database.

13 proteins are bound to ATG3 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	112256992	112257001	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.74207	4.30740	K562	PUM1
chr3	112256641	112256739	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.18482	8.60722	K562	PUM1
chr3	112256992	112257028	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.62407	4.17155	HepG2	BCLAF1
chr3	112256656	112256738	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.51287	10.24913	HepG2	BCLAF1
chr3	112256992	112257003	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.15035	6.99374	K562	ZNF622
chr3	112260649	112260732	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.27473	3.83856	K562	CPSF6
chr3	112251548	112251619	-	3'-UTR,CDS,intron-Distal	3.10595	3.19733	K562	ZNF622
chr3	112256579	112256723	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.48030	3.80299	HepG2	GRWD1
chr3	112256990	112257028	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.34242	5.86433	K562	UCHL5
chr3	112257001	112257028	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.29659	3.23147	K562	PUM1
chr3	112256653	112256698	-	3'-UTR,CDS,intron-Distal	3.75211	4.79276	K562	ZNF622
chr3	112256579	112256641	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.66607	4.30740	K562	PUM1
chr3	112256990	112257028	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.23350	3.83856	K562	CPSF6
chr3	112262902	112262952	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.35210	3.87995	K562	UCHL5
chr3	112256647	112256738	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.33045	5.29927	K562	ZNF800
chr3	112256579	112256656	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.34560	4.34695	HepG2	BCLAF1
chr3	112257003	112257029	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.74246	7.35414	K562	ZNF622
chr3	112251439	112251504	-	3'-UTR,intron-Distal	4.25280	7.71026	K562	PABPC4
chr3	112256698	112256738	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.52772	10.28502	K562	ZNF622
chr3	112272126	112272175	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.21507	3.45943	HepG2	BCLAF1
chr3	112272125	112272166	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.34584	3.31745	K562	ZNF622
chr3	112269057	112269111	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.35188	3.53690	K562	ZNF622
chr3	112280570	112280729	-	5'-UTR,intron-Distal,intron-Proximal	3.18912	4.47117	K562	DDX3X
chr3	112280547	112280665	-	5'-UTR,intron-Distal,intron-Proximal	3.60527	7.36734	HepG2	DDX3X
chr3	112280486	112280570	-	5'-UTR,intron-Distal,intron-Proximal	4.61413	4.79919	K562	GEMIN5
chr3	112280255	112280332	-	CDS,intron-Distal	5.29121	7.70650	HepG2	PRPF8
chr3	112255320	112255378	-	CDS,intron-Distal,intron-Proximal	3.58305	5.95375	K562	ZNF622
chr3	112261149	112261210	-	intron-Distal	4.23936	4.10688	K562	KHSRP
chr3	112261236	112261353	-	intron-Distal	3.38255	3.68839	K562	KHSRP
chr3	112259518	112259606	-	intron-Distal	3.56990	5.47669	K562	PTBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for ATG3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ATG3 is not available on ENCORE database.
67 RBPs can affect the levels of ATG3.

The Knockdown/knockout RNA-Seq assay for ATG3 is not available on ENCORE database.

67 RBPs can affect the gene expression of ATG3 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ATG3	ENSG00000144848.6	956.79790	559.07290	0.77510	6.74410	5.95470	HepG2	AKAP1
ATG3	ENSG00000144848.6	594.59010	461.77320	0.36460	2.08360	1.40700	HepG2	CALR
ATG3	ENSG00000144848.6	427.54320	700.68960	-0.71270	4.96850	3.64630	HepG2	CCAR1
ATG3	ENSG00000144848.6	334.41080	563.57980	-0.75300	6.14570	5.15340	HepG2	CPSF6
ATG3	ENSG00000144848.6	448.94630	572.47850	-0.35070	2.74870	2.00910	HepG2	DAZAP1
ATG3	ENSG00000144848.6	443.14980	353.42800	0.32630	2.27090	1.50990	HepG2	DDX19B
ATG3	ENSG00000144848.6	987.34990	535.58660	0.88230	9.79610	8.68270	HepG2	DDX3X
ATG3	ENSG00000144848.6	242.27980	334.98790	-0.46740	3.28790	2.58810	HepG2	DNAJC2
ATG3	ENSG00000144848.6	385.10830	279.36140	0.46300	2.12510	1.31720	HepG2	EEF2
ATG3	ENSG00000144848.6	330.49620	232.89010	0.50490	2.48460	1.43380	HepG2	EFTUD2
ATG3	ENSG00000144848.6	311.25970	442.28880	-0.50690	2.65750	2.07650	HepG2	EIF2S1
ATG3	ENSG00000144848.6	393.48280	226.77960	0.79490	5.58530	4.33130	HepG2	EIF3D
ATG3	ENSG00000144848.6	465.42500	598.59620	-0.36300	2.90690	2.17290	HepG2	HNRNPF
ATG3	ENSG00000144848.6	440.50460	589.44620	-0.42020	3.16760	2.39680	HepG2	IGF2BP1
ATG3	ENSG00000144848.6	715.12880	496.02790	0.52770	3.32110	2.63560	HepG2	MATR3
ATG3	ENSG00000144848.6	380.58190	621.74340	-0.70810	4.11240	2.92080	HepG2	MTPAP
ATG3	ENSG00000144848.6	384.55740	540.59710	-0.49140	2.95340	2.18110	HepG2	NSUN2
ATG3	ENSG00000144848.6	515.72320	323.64330	0.67210	3.19120	2.23530	HepG2	PABPC1
ATG3	ENSG00000144848.6	238.31700	336.28020	-0.49680	3.13960	2.35890	HepG2	PPIL4
ATG3	ENSG00000144848.6	782.80630	362.09530	1.11220	7.89260	6.73820	HepG2	RAVER1
ATG3	ENSG00000144848.6	732.04340	582.24850	0.33020	2.18200	1.40890	HepG2	RBM15
ATG3	ENSG00000144848.6	891.91810	628.74020	0.50430	5.85080	5.16750	HepG2	RBM22
ATG3	ENSG00000144848.6	213.44430	476.84090	-1.15960	3.51070	1.64550	HepG2	RBM39
ATG3	ENSG00000144848.6	395.76920	492.41560	-0.31520	1.91680	1.39070	HepG2	RECQL
ATG3	ENSG00000144848.6	295.60330	220.66710	0.42170	1.92630	1.40550	HepG2	RPS19
ATG3	ENSG00000144848.6	336.39160	221.47290	0.60290	3.22040	2.20260	HepG2	SERBP1
ATG3	ENSG00000144848.6	706.40280	465.77920	0.60070	3.89530	3.08920	HepG2	SF3A3
ATG3	ENSG00000144848.6	470.56260	603.51330	-0.35900	2.02810	1.41910	HepG2	SF3B1
ATG3	ENSG00000144848.6	629.48730	494.60710	0.34780	2.57150	1.99760	HepG2	SF3B4
ATG3	ENSG00000144848.6	423.79990	519.61490	-0.29410	1.90900	1.30790	HepG2	SLBP
ATG3	ENSG00000144848.6	902.39000	710.16150	0.34550	3.65400	3.10270	HepG2	SRFBP1
ATG3	ENSG00000144848.6	755.48610	516.26230	0.54920	6.29070	5.64880	HepG2	SRSF1
ATG3	ENSG00000144848.6	459.46690	588.10160	-0.35610	2.77890	2.08190	HepG2	SRSF7
ATG3	ENSG00000144848.6	460.49020	594.17960	-0.36770	2.03490	1.40130	HepG2	TARDBP
ATG3	ENSG00000144848.6	296.60860	369.62870	-0.31750	1.85780	1.37780	HepG2	TRIM56
ATG3	ENSG00000144848.6	923.82320	433.55380	1.09130	6.96270	5.97600	HepG2	U2AF1
ATG3	ENSG00000144848.6	1016.53620	791.44260	0.36100	2.69330	1.52860	K562	AARS
ATG3	ENSG00000144848.6	717.86160	888.75850	-0.30810	2.66630	1.38520	K562	BCCIP
ATG3	ENSG00000144848.6	661.32200	858.91740	-0.37720	4.02370	2.84840	K562	BCLAF1
ATG3	ENSG00000144848.6	777.28230	1049.71100	-0.43350	2.65060	1.79780	K562	BOP1
ATG3	ENSG00000144848.6	268.27860	421.11570	-0.65050	4.65630	3.21050	K562	CCAR1
ATG3	ENSG00000144848.6	1243.98450	1589.15740	-0.35330	4.22260	2.83490	K562	CPEB4
ATG3	ENSG00000144848.6	623.28610	1116.19700	-0.84060	7.81180	6.48450	K562	CPSF6
ATG3	ENSG00000144848.6	461.03960	651.61700	-0.49910	4.18980	2.85400	K562	CSTF2
ATG3	ENSG00000144848.6	2034.31780	1644.44210	0.30680	4.24940	3.46550	K562	DDX47
ATG3	ENSG00000144848.6	931.83140	744.56300	0.32360	2.41160	1.66640	K562	EIF3G
ATG3	ENSG00000144848.6	783.80510	1135.60140	-0.53490	3.91520	2.89440	K562	FMR1
ATG3	ENSG00000144848.6	692.93270	962.48010	-0.47400	2.58860	1.70720	K562	FTO
ATG3	ENSG00000144848.6	1083.66090	715.37960	0.59900	8.96670	7.94900	K562	FXR1
ATG3	ENSG00000144848.6	1078.28470	751.98680	0.51990	3.36860	2.57440	K562	G3BP2
ATG3	ENSG00000144848.6	822.68840	1065.73580	-0.37340	2.32370	1.59530	K562	GPKOW
ATG3	ENSG00000144848.6	615.93880	866.14470	-0.49180	4.29570	3.56870	K562	HNRNPC
ATG3	ENSG00000144848.6	515.22840	773.40340	-0.58600	5.39470	3.72930	K562	HNRNPF
ATG3	ENSG00000144848.6	1041.08840	1486.11350	-0.51350	6.06600	4.43960	K562	HNRNPL
ATG3	ENSG00000144848.6	1287.81610	982.20540	0.39070	2.57880	1.68380	K562	HNRNPM
ATG3	ENSG00000144848.6	949.86100	1188.81850	-0.32370	3.01780	2.08770	K562	HNRNPU
ATG3	ENSG00000144848.6	645.78310	909.89440	-0.49460	2.87380	1.91860	K562	KRR1
ATG3	ENSG00000144848.6	750.75900	1040.25920	-0.47050	3.42120	2.44330	K562	METAP2
ATG3	ENSG00000144848.6	966.72960	1175.81510	-0.28250	2.95690	2.12160	K562	MTPAP
ATG3	ENSG00000144848.6	922.87900	1306.46950	-0.50150	9.90390	8.60880	K562	NSUN2
ATG3	ENSG00000144848.6	867.20020	1257.47040	-0.53610	3.24990	1.30440	K562	PPIL4
ATG3	ENSG00000144848.6	1180.26840	695.45270	0.76300	9.27200	7.89340	K562	PRPF8
ATG3	ENSG00000144848.6	563.36000	776.57140	-0.46310	3.26310	2.26860	K562	PSIP1
ATG3	ENSG00000144848.6	1138.87050	908.48220	0.32600	2.74870	2.08650	K562	PTBP1
ATG3	ENSG00000144848.6	1862.13580	2318.66090	-0.31630	3.91490	2.76950	K562	PUM2
ATG3	ENSG00000144848.6	1760.75110	1281.85950	0.45790	4.40070	3.73880	K562	PUS1
ATG3	ENSG00000144848.6	558.84610	708.43370	-0.34220	2.33870	1.43150	K562	RCC2
ATG3	ENSG00000144848.6	1098.59500	708.52010	0.63270	5.76290	4.57900	K562	RPS19
ATG3	ENSG00000144848.6	873.30400	1289.10250	-0.56180	8.94920	7.54180	K562	SF3A3
ATG3	ENSG00000144848.6	466.31210	671.58520	-0.52630	3.96730	2.66900	K562	SRFBP1
ATG3	ENSG00000144848.6	1091.53730	1320.70890	-0.27500	3.23940	2.23420	K562	SRPK2
ATG3	ENSG00000144848.6	980.43310	663.48580	0.56330	6.64510	5.36440	K562	SYNCRIP
ATG3	ENSG00000144848.6	485.49550	746.94240	-0.62150	4.91770	3.63880	K562	TIAL1
ATG3	ENSG00000144848.6	504.39520	793.43250	-0.65360	6.09440	4.56760	K562	TRIM56
ATG3	ENSG00000144848.6	1107.86440	1385.27460	-0.32240	4.12330	3.26270	K562	UPF1
ATG3	ENSG00000144848.6	851.00520	1185.34000	-0.47810	5.10570	3.89990	K562	WDR3
ATG3	ENSG00000144848.6	1184.20970	1904.51620	-0.68550	4.64430	3.48270	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ATG3 is not available on ENCORE database.

6 RBPs can affect the splicing of ATG3 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ATG3	ENSG00000144848.6	chr3	-	112272126	112272176			112269038	112269109	112277222	112277264	-0.07900	0.00038	0.03795	excluded	K562	XRCC6
SE	ATG3	ENSG00000144848.6	chr3	-	112262903	112262953			112260649	112260731	112267379	112267487	-0.09000	0.00000	0.00000	excluded	K562	AQR
SE	ATG3	ENSG00000144848.6	chr3	-	112269038	112269109			112267379	112267487	112272126	112272176	-0.06300	0.00000	0.00000	excluded	K562	AQR
SE	ATG3	ENSG00000144848.6	chr3	-	112272126	112272176			112269038	112269109	112277222	112277264	0.12300	0.00045	0.09237	included	HepG2	EIF3D
A3SS	ATG3	ENSG00000144848.6	chr3	-	112262903	112262981			112262903	112262953	112267379	112267515	0.10100	0.00000	0.00000	longer	K562	AQR
A3SS	ATG3	ENSG00000144848.6	chr3	-	112272126	112272279			112272126	112272176	112277222	112277264	0.06000	0.00021	0.00168	longer	K562	AQR
MXE	ATG3	ENSG00000144848.6	chr3	-	112269038	112269101	112272126	112272279	112267379	112267487	112277222	112277264	0.06600	0.00000	0.00000	1included	K562	AQR
MXE	ATG3	ENSG00000144848.6	chr3	-	112269038	112269101	112272126	112272231	112267379	112267487	112277222	112277264	0.06900	0.00000	0.00000	1included	K562	AQR
MXE	ATG3	ENSG00000144848.6	chr3	-	112269038	112269101	112272126	112272260	112267379	112267487	112277222	112277264	0.07400	0.00000	0.00000	1included	K562	AQR
MXE	ATG3	ENSG00000144848.6	chr3	-	112262903	112262953	112267379	112267515	112260649	112260731	112272126	112272176	0.08000	0.00000	0.00000	1included	K562	AQR
MXE	ATG3	ENSG00000144848.6	chr3	-	112260649	112260731	112262903	112262981	112256992	112257027	112267379	112267487	0.05900	0.00000	0.00000	1included	K562	AQR
MXE	ATG3	ENSG00000144848.6	chr3	-	112269038	112269109	112272126	112272279	112267379	112267487	112277222	112277264	0.05100	0.00000	0.00000	1included	K562	AQR
MXE	ATG3	ENSG00000144848.6	chr3	-	112269038	112269109	112272126	112272231	112267379	112267487	112277222	112277264	0.05200	0.00000	0.00000	1included	K562	AQR
MXE	ATG3	ENSG00000144848.6	chr3	-	112269038	112269109	112272126	112272260	112267379	112267487	112277222	112277264	0.05600	0.00000	0.00000	1included	K562	AQR
MXE	ATG3	ENSG00000144848.6	chr3	-	112272126	112272176	112277222	112277264	112269038	112269109	112280692	112280893	0.06300	0.00627	0.04348	1included	K562	AQR
MXE	ATG3	ENSG00000144848.6	chr3	-	112260649	112260731	112262903	112262953	112256992	112257027	112267379	112267487	-0.08600	0.00869	0.05652	2included	K562	AQR
MXE	ATG3	ENSG00000144848.6	chr3	-	112272126	112272176	112277222	112277264	112267379	112267487	112280303	112280771	-0.12100	0.00007	0.00086	2included	K562	AQR
MXE	ATG3	ENSG00000144848.6	chr3	-	112272126	112272176	112277222	112277264	112269038	112269109	112280303	112280771	0.13000	0.00490	0.08624	1included	K562	TARDBP
MXE	ATG3	ENSG00000144848.6	chr3	-	112272126	112272176	112277222	112277264	112269038	112269109	112280303	112280771	0.16700	0.00056	0.04385	1included	K562	RBM22
MXE	ATG3	ENSG00000144848.6	chr3	-	112269038	112269101	112272126	112272176	112267379	112267487	112277222	112277264	0.07000	0.00104	0.03192	1included	K562	PPIL4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ATG3

General Information

Functions

Localization

Domains (AlphaFold: ATG3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ATG3 is not avaliable on ENCORE database.

13 proteins are bound to ATG3 RNA:

eCLIP assay for ATG3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ATG3 is not available on ENCORE database.

67 RBPs can affect the gene expression of ATG3 :

The Knockdown/knockout RNA-Seq assay for ATG3 is not available on ENCORE database.

6 RBPs can affect the splicing of ATG3 :

The Knockdown/knockout RNA-Seq assay for ATG3 is not avaliable on ENCORE database.