AFG3L1P

General Information

Gene Name       : AFG3L1P
Gene ID             : ENSG00000223959.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: AFG3L1P)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878AFG3L1PENSG00000223959.814.2718.1016.19ENCSR000AEF
HepG2AFG3L1PENSG00000223959.834.1624.8829.52ENCSR985KAT
K562AFG3L1PENSG00000223959.819.2517.4918.37ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for AFG3L1P is not avaliable on ENCORE database.



Proteins bound to RNA
  • AFG3L1P RNA is bound by 19 proteins.  







eCLIP assay for AFG3L1P is not avaliable on ENCORE database.





19 proteins are bound to AFG3L1P RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr169005530290055360+intron-Distal,intron-Proximal3.849947.55042HepG2PPIG
chr169006116590061289+intron-Distal,intron-Proximal4.081817.16955K562UCHL5
chr169005346290053501+intron-Distal3.184903.11000HepG2HNRNPM
chr169006116490061253+intron-Distal,intron-Proximal4.618724.45558HepG2GRWD1
chr169003919490039291+intron-Distal,intron-Proximal4.414936.49249HepG2EFTUD2
chr169003948990039562+intron-Distal5.068417.23707K562RBM15
chr169004409790044215+intron-Distal,intron-Proximal3.970998.16229HepG2GRWD1
chr169003924090039293+intron-Distal,intron-Proximal4.5976212.23517HepG2RBM22
chr169003953390039612+intron-Distal4.053183.31905K562NONO
chr169005442490054486+intron-Distal3.594375.73132HepG2ILF3
chr169005521990055247+intron-Distal,intron-Proximal3.639454.34573HepG2SF3B4
chr169006235290062606+intron-Distal3.160343.49055K562GRWD1
chr169006253490062639+intron-Distal3.933714.06757K562UCHL5
chr169006238690062489+intron-Distal3.098685.33987HepG2GRWD1
chr169005727290057367+intron-Distal,intron-Proximal3.544413.79741HepG2GRWD1
chr169006248990062666+intron-Distal4.357749.69911HepG2GRWD1
chr169005354190053630+intron-Distal3.398154.65797K562TARDBP
chr169004634790046404+intron-Distal3.823895.76944HepG2U2AF2
chr169005351290053621+intron-Distal4.167504.51309K562HNRNPM
chr169006278390062892+intron-Distal4.086924.08283K562ZC3H11A
chr169005382690053890+intron-Distal3.810134.13833K562GTF2F1
chr169005531190055360+intron-Distal,intron-Proximal3.983403.43980K562ZNF622
chr169005382990053906+intron-Distal4.324164.42691HepG2GTF2F1
chr169006287690062949+intron-Distal3.471834.22563K562UCHL5
chr169004528590045379+intron-Distal,intron-Proximal4.323596.39176K562AQR
chr169004817290048259+intron-Proximal4.500195.22147HepG2SRSF1
chr169004827290048411+intron-Proximal3.712105.25185K562PRPF8
chr169005092890050971+intron-Proximal4.1385711.71981HepG2U2AF2
chr169005092890050973+intron-Proximal4.951959.50331K562U2AF2
chr169005097990051052+intron-Proximal3.300775.62208HepG2PRPF8
chr169004829690048332+intron-Proximal4.3286112.18291HepG2PPIG
chr169005093690050964+intron-Proximal3.459697.64107HepG2PPIG
chr169006025490060310+intron-Proximal4.083533.56019HepG2GRWD1
chr169004831290048332+intron-Proximal3.204283.39306HepG2GRWD1
chr169004665590046747+intron-Proximal3.136319.65606HepG2PPIG
chr169006029690060345+intron-Proximal5.8279912.15317HepG2PRPF8
chr169004659290046714+intron-Proximal3.502793.96535HepG2AQR
chr169004817890048260+intron-Proximal3.830103.26875HepG2SRSF9
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for AFG3L1P is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for AFG3L1P is not available on ENCORE database.

  • 63 RBPs can affect the levels of AFG3L1P.  








The Knockdown/knockout RNA-Seq assay for AFG3L1P is not available on ENCORE database.





63 RBPs can affect the gene expression of AFG3L1P :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
AFG3L1PENSG00000223959.4576.28010833.23860-0.532006.383605.40970HepG2AUH
AFG3L1PENSG00000223959.4762.27670495.821800.620403.983502.85950HepG2BCCIP
AFG3L1PENSG00000223959.4426.75980203.421601.068909.021707.98840HepG2EIF2S1
AFG3L1PENSG00000223959.4518.47110379.106300.451603.194001.93130HepG2EIF2S2
AFG3L1PENSG00000223959.4563.75770224.800201.3263014.5560013.11500HepG2EIF4A3
AFG3L1PENSG00000223959.4601.71720218.883301.4588014.1506012.66330HepG2EIF4B
AFG3L1PENSG00000223959.4446.32400753.79190-0.756104.431203.41560HepG2EIF4G2
AFG3L1PENSG00000223959.41458.60460956.746400.6083011.2974010.21370HepG2ETF1
AFG3L1PENSG00000223959.4406.07910186.789701.1202010.955609.43890HepG2FUBP3
AFG3L1PENSG00000223959.4618.39150226.827901.4468018.5896016.97520HepG2FXR1
AFG3L1PENSG00000223959.4662.73270210.408801.6551023.7548021.89820HepG2G3BP1
AFG3L1PENSG00000223959.4511.21520223.385501.1943012.4365010.55140HepG2G3BP2
AFG3L1PENSG00000223959.4530.76100342.075100.633604.968304.13540HepG2HNRNPA1
AFG3L1PENSG00000223959.4541.05870380.509900.507803.322302.56820HepG2HNRNPC
AFG3L1PENSG00000223959.4532.87070640.23560-0.264802.020801.40110HepG2HNRNPF
AFG3L1PENSG00000223959.4591.26710213.075201.4723019.5068017.80380HepG2HNRNPK
AFG3L1PENSG00000223959.4465.92180348.175400.420202.610701.68470HepG2HNRNPM
AFG3L1PENSG00000223959.4629.93970436.357100.529603.026401.73390HepG2HSPD1
AFG3L1PENSG00000223959.4525.80420213.873301.2977014.3164012.91560HepG2IGF2BP2
AFG3L1PENSG00000223959.4471.69110200.721501.232505.565604.19510HepG2IGF2BP3
AFG3L1PENSG00000223959.4508.82630386.105000.398103.395402.58920HepG2ILF2
AFG3L1PENSG00000223959.4431.35950215.124901.003607.066005.37940HepG2KHSRP
AFG3L1PENSG00000223959.4657.13650226.907201.5340020.7844019.07420HepG2MAGOH
AFG3L1PENSG00000223959.4392.56110228.174900.782704.721903.91510HepG2MATR3
AFG3L1PENSG00000223959.4516.24340233.547801.144209.095007.98550HepG2NCBP2
AFG3L1PENSG00000223959.4445.63660207.981101.0993010.017008.66440HepG2PABPC4
AFG3L1PENSG00000223959.4483.45030205.037801.2374018.5965017.24930HepG2PCBP1
AFG3L1PENSG00000223959.4426.24150208.640601.0306012.0769011.09380HepG2PTBP1
AFG3L1PENSG00000223959.4580.79440754.96340-0.378402.526001.95330HepG2PUF60
AFG3L1PENSG00000223959.4413.60240225.947900.872207.919106.94570HepG2QKI
AFG3L1PENSG00000223959.4467.19510205.067901.1878013.8832012.43890HepG2RBM25
AFG3L1PENSG00000223959.4569.92510232.191101.2954020.0106018.81210HepG2NELFE
AFG3L1PENSG00000223959.4519.14650216.265101.2632018.8599017.49090HepG2RECQL
AFG3L1PENSG00000223959.4521.74110689.77140-0.402802.968102.26420HepG2RPLP0
AFG3L1PENSG00000223959.4434.82730336.611000.369302.511501.89290HepG2SAFB2
AFG3L1PENSG00000223959.4566.98130217.209201.3841023.1165021.68840HepG2SF3B4
AFG3L1PENSG00000223959.4585.87890723.94720-0.305302.463701.79590HepG2SLBP
AFG3L1PENSG00000223959.4556.63960392.530800.503805.155904.32300HepG2SMN1
AFG3L1PENSG00000223959.4319.90970597.76720-0.901904.042903.08980HepG2SNRNP70
AFG3L1PENSG00000223959.4697.58440903.14340-0.372603.895103.33070HepG2SRFBP1
AFG3L1PENSG00000223959.4432.59340226.724500.932009.896509.12560HepG2SRSF1
AFG3L1PENSG00000223959.4339.94750629.02900-0.8878013.6408012.29730HepG2SRSF7
AFG3L1PENSG00000223959.4331.42090184.456900.845307.907607.05950HepG2SRSF9
AFG3L1PENSG00000223959.4422.38040203.803101.0513011.7881010.75650HepG2TAF15
AFG3L1PENSG00000223959.4424.49330187.252201.1807014.1534012.29930HepG2TIA1
AFG3L1PENSG00000223959.4486.51960367.236200.405702.705702.20970HepG2TIAL1
AFG3L1PENSG00000223959.4567.49490431.671300.394602.358801.77420HepG2U2AF1
AFG3L1PENSG00000223959.4467.25510286.662100.704805.078504.04260HepG2UCHL5
AFG3L1PENSG00000223959.4738.64730444.327100.733204.547203.24320HepG2UPF2
AFG3L1PENSG00000223959.4749.88040477.713400.650404.845103.89490HepG2XRN2
AFG3L1PENSG00000223959.4307.63980423.83670-0.462302.861802.06620K562CPSF6
AFG3L1PENSG00000223959.4525.10060350.104400.584705.462604.35820K562EIF3G
AFG3L1PENSG00000223959.4643.58140504.281900.351802.518401.93520K562FXR1
AFG3L1PENSG00000223959.4220.83230345.86320-0.647303.268102.48840K562G3BP2
AFG3L1PENSG00000223959.4852.266301049.10420-0.299802.095301.43150K562GRSF1
AFG3L1PENSG00000223959.4668.91090437.446600.612605.436004.62660K562HNRNPC
AFG3L1PENSG00000223959.4745.54530609.545100.290502.311601.57030K562MTPAP
AFG3L1PENSG00000223959.4341.01460563.35710-0.724205.762803.74300K562NONO
AFG3L1PENSG00000223959.4374.52450599.72010-0.679205.136702.66340K562PA2G4
AFG3L1PENSG00000223959.4465.03250656.60480-0.497703.167302.27650K562PCBP3
AFG3L1PENSG00000223959.4329.17430541.63260-0.718505.438602.84340K562PES1
AFG3L1PENSG00000223959.4384.22780503.66230-0.390502.337201.60150K562POLR2G
AFG3L1PENSG00000223959.4364.08830556.26510-0.611504.320203.38320K562PRPF8
AFG3L1PENSG00000223959.4345.36140566.58500-0.714204.840803.75840K562RPS19
AFG3L1PENSG00000223959.4371.62590568.72140-0.613903.493101.98550K562RRP9
AFG3L1PENSG00000223959.4563.19290414.573700.441902.222801.58470K562TARDBP
AFG3L1PENSG00000223959.4524.19090399.907300.390302.445901.68110K562TIA1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for AFG3L1P is not available on ENCORE database.





11 RBPs can affect the splicing of AFG3L1P :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAFG3L1PENSG00000223959.4chr16+900452179004528690038993900391739004664990046744-0.411000.000530.01909excludedK562AKAP8L
SEAFG3L1PENSG00000223959.4chr16+900452179004528690044012900442109004664990046744-0.200000.006640.07712excludedK562PUS1
SEAFG3L1PENSG00000223959.4chr16+9004521790045286900440129004421090046649900467440.124000.000410.03126includedHepG2FTO
SEAFG3L1PENSG00000223959.4chr16+900452179004528690038993900391739004664990046744-0.523000.000000.00025excludedK562UTP18
SEAFG3L1PENSG00000223959.4chr16+900452179004528690038993900391739004664990046744-0.578000.000000.00005excludedK562RBM15
SEAFG3L1PENSG00000223959.4chr16+900452179004528690038993900391739004664990046744-0.492000.000360.01233excludedK562AGGF1
A3SSAFG3L1PENSG00000223959.4chr16+9004662890046744900466499004674490045217900452860.093000.011620.06006longerK562AQR
A3SSAFG3L1PENSG00000223959.4chr16+9005724790057411900572739005741190055259900553590.253000.007350.04053longerK562AQR
MXEAFG3L1PENSG00000223959.4chr16+90044046900442109004521790045286900389939003917390046649900467440.264000.004370.043651includedHepG2SFPQ
MXEAFG3L1PENSG00000223959.4chr16+90044122900442109004521790045286900389939003917390046649900467440.120000.019490.090851includedHepG2U2AF2
MXEAFG3L1PENSG00000223959.4chr16+9004404690044210900452179004528690038993900391739004664990046744-0.211000.000490.051072includedK562ZNF800
MXEAFG3L1PENSG00000223959.4chr16+9004404690044210900452179004528690038993900391739004664990046744-0.129000.005410.089182includedK562PPIL4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for AFG3L1P is not avaliable on ENCORE database.