AFG3L1P

General Information

Gene Name : AFG3L1P
Gene ID : ENSG00000223959.8
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: AFG3L1P)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	AFG3L1P	ENSG00000223959.8	14.27	18.10	16.19	ENCSR000AEF
HepG2	AFG3L1P	ENSG00000223959.8	34.16	24.88	29.52	ENCSR985KAT
K562	AFG3L1P	ENSG00000223959.8	19.25	17.49	18.37	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for AFG3L1P is not avaliable on ENCORE database.

Proteins bound to RNA

AFG3L1P RNA is bound by 19 proteins.

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eCLIP assay for AFG3L1P is not avaliable on ENCORE database.

19 proteins are bound to AFG3L1P RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	90039240	90039293	+	intron-Distal,intron-Proximal	4.59762	12.23517	HepG2	RBM22
chr16	90048296	90048332	+	intron-Proximal	4.32861	12.18291	HepG2	PPIG
chr16	90060296	90060345	+	intron-Proximal	5.82799	12.15317	HepG2	PRPF8
chr16	90050928	90050971	+	intron-Proximal	4.13857	11.71981	HepG2	U2AF2
chr16	90062489	90062666	+	intron-Distal	4.35774	9.69911	HepG2	GRWD1
chr16	90046655	90046747	+	intron-Proximal	3.13631	9.65606	HepG2	PPIG
chr16	90050928	90050973	+	intron-Proximal	4.95195	9.50331	K562	U2AF2
chr16	90044097	90044215	+	intron-Distal,intron-Proximal	3.97099	8.16229	HepG2	GRWD1
chr16	90050936	90050964	+	intron-Proximal	3.45969	7.64107	HepG2	PPIG
chr16	90055302	90055360	+	intron-Distal,intron-Proximal	3.84994	7.55042	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 38 entries

eCLIP assay for AFG3L1P is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for AFG3L1P is not available on ENCORE database.
63 RBPs can affect the levels of AFG3L1P.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for AFG3L1P is not available on ENCORE database.

63 RBPs can affect the gene expression of AFG3L1P :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
AFG3L1P	ENSG00000223959.4	662.73270	210.40880	1.65510	23.75480	21.89820	HepG2	G3BP1
AFG3L1P	ENSG00000223959.4	566.98130	217.20920	1.38410	23.11650	21.68840	HepG2	SF3B4
AFG3L1P	ENSG00000223959.4	657.13650	226.90720	1.53400	20.78440	19.07420	HepG2	MAGOH
AFG3L1P	ENSG00000223959.4	569.92510	232.19110	1.29540	20.01060	18.81210	HepG2	NELFE
AFG3L1P	ENSG00000223959.4	591.26710	213.07520	1.47230	19.50680	17.80380	HepG2	HNRNPK
AFG3L1P	ENSG00000223959.4	519.14650	216.26510	1.26320	18.85990	17.49090	HepG2	RECQL
AFG3L1P	ENSG00000223959.4	483.45030	205.03780	1.23740	18.59650	17.24930	HepG2	PCBP1
AFG3L1P	ENSG00000223959.4	618.39150	226.82790	1.44680	18.58960	16.97520	HepG2	FXR1
AFG3L1P	ENSG00000223959.4	563.75770	224.80020	1.32630	14.55600	13.11500	HepG2	EIF4A3
AFG3L1P	ENSG00000223959.4	525.80420	213.87330	1.29770	14.31640	12.91560	HepG2	IGF2BP2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 67 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for AFG3L1P is not available on ENCORE database.

11 RBPs can affect the splicing of AFG3L1P :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	AFG3L1P	ENSG00000223959.4	chr16	+	90045217	90045286			90038993	90039173	90046649	90046744	-0.52300	0.00000	0.00025	excluded	K562	UTP18
SE	AFG3L1P	ENSG00000223959.4	chr16	+	90045217	90045286			90038993	90039173	90046649	90046744	-0.57800	0.00000	0.00005	excluded	K562	RBM15
SE	AFG3L1P	ENSG00000223959.4	chr16	+	90045217	90045286			90038993	90039173	90046649	90046744	-0.49200	0.00036	0.01233	excluded	K562	AGGF1
SE	AFG3L1P	ENSG00000223959.4	chr16	+	90045217	90045286			90044012	90044210	90046649	90046744	0.12400	0.00041	0.03126	included	HepG2	FTO
MXE	AFG3L1P	ENSG00000223959.4	chr16	+	90044046	90044210	90045217	90045286	90038993	90039173	90046649	90046744	-0.21100	0.00049	0.05107	2included	K562	ZNF800
SE	AFG3L1P	ENSG00000223959.4	chr16	+	90045217	90045286			90038993	90039173	90046649	90046744	-0.41100	0.00053	0.01909	excluded	K562	AKAP8L
MXE	AFG3L1P	ENSG00000223959.4	chr16	+	90044046	90044210	90045217	90045286	90038993	90039173	90046649	90046744	0.26400	0.00437	0.04365	1included	HepG2	SFPQ
MXE	AFG3L1P	ENSG00000223959.4	chr16	+	90044046	90044210	90045217	90045286	90038993	90039173	90046649	90046744	-0.12900	0.00541	0.08918	2included	K562	PPIL4
SE	AFG3L1P	ENSG00000223959.4	chr16	+	90045217	90045286			90044012	90044210	90046649	90046744	-0.20000	0.00664	0.07712	excluded	K562	PUS1
A3SS	AFG3L1P	ENSG00000223959.4	chr16	+	90057247	90057411			90057273	90057411	90055259	90055359	0.25300	0.00735	0.04053	longer	K562	AQR

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

AFG3L1P

General Information

Functions

Localization

Domains (AlphaFold: AFG3L1P)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for AFG3L1P is not avaliable on ENCORE database.

19 proteins are bound to AFG3L1P RNA:

eCLIP assay for AFG3L1P is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for AFG3L1P is not available on ENCORE database.

63 RBPs can affect the gene expression of AFG3L1P :

The Knockdown/knockout RNA-Seq assay for AFG3L1P is not available on ENCORE database.

11 RBPs can affect the splicing of AFG3L1P :

The Knockdown/knockout RNA-Seq assay for AFG3L1P is not avaliable on ENCORE database.