ZNF542

General Information

Gene Name       : ZNF542
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF542)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF542 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF542 RNA is bound by 1 proteins.  







eCLIP assay for ZNF542 is not avaliable on ENCORE database.





1 proteins are bound to ZNF542 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr195687978156879829+intron-Distal4.003253.86664K562DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF542 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF542 is not available on ENCORE database.

  • 81 RBPs can affect the levels of ZNF542.  








The Knockdown/knockout RNA-Seq assay for ZNF542 is not available on ENCORE database.





81 RBPs can affect the gene expression of ZNF542 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF542ENSG00000240225.690.82080152.80140-0.750602.833901.75180HepG2AATF
ZNF542ENSG00000240225.6237.02130163.170400.538502.352901.43070HepG2ADAR
ZNF542ENSG00000240225.6350.55030194.701500.848307.834206.62260HepG2AKAP8L
ZNF542ENSG00000240225.6500.54450354.068600.499404.042703.24220HepG2AUH
ZNF542ENSG00000240225.6397.63160220.436200.851006.634405.75500HepG2BOP1
ZNF542ENSG00000240225.6347.72850159.955701.120204.731103.72470HepG2CNOT7
ZNF542ENSG00000240225.6292.52900202.367300.531502.438601.78720HepG2CPSF6
ZNF542ENSG00000240225.6201.99280130.724600.627702.501401.47520HepG2CSTF2
ZNF542ENSG00000240225.6409.29820277.114200.562604.393203.61590HepG2CELF1
ZNF542ENSG00000240225.6238.61780179.224900.412802.145801.40430HepG2DDX19B
ZNF542ENSG00000240225.6260.34910168.647400.626303.103602.38860HepG2DDX21
ZNF542ENSG00000240225.6288.81070164.983800.807705.142003.88810HepG2DDX24
ZNF542ENSG00000240225.6497.24470343.407900.533903.109402.45080HepG2DDX3X
ZNF542ENSG00000240225.6262.62450185.398500.502302.461801.81650HepG2DKC1
ZNF542ENSG00000240225.6251.14750161.317800.638502.783401.86080HepG2EEF2
ZNF542ENSG00000240225.6205.05550134.512000.608202.535601.47210HepG2EFTUD2
ZNF542ENSG00000240225.6228.79710159.226400.522902.315901.32560HepG2EIF3G
ZNF542ENSG00000240225.6529.99200406.534100.382502.403701.83590HepG2ETF1
ZNF542ENSG00000240225.6434.38500311.315000.480502.587601.72890HepG2G3BP2
ZNF542ENSG00000240225.6296.30660165.880300.836805.059104.22040HepG2HNRNPA1
ZNF542ENSG00000240225.6185.23490273.83970-0.564003.183502.19010HepG2HNRNPA2B1
ZNF542ENSG00000240225.6143.97980218.90750-0.604502.423601.82910HepG2HNRNPLL
ZNF542ENSG00000240225.6229.04390159.363200.523202.389101.50430HepG2HNRNPM
ZNF542ENSG00000240225.6298.58980200.319800.575802.478401.31990HepG2HSPD1
ZNF542ENSG00000240225.6514.70820270.355800.928806.934905.60840HepG2LARP4
ZNF542ENSG00000240225.6425.19930316.239600.427002.085601.51320HepG2MAGOH
ZNF542ENSG00000240225.6276.12710186.951800.562602.802301.98880HepG2MSI2
ZNF542ENSG00000240225.6444.27850289.978400.615403.870003.02670HepG2PABPC4
ZNF542ENSG00000240225.6423.20770274.441200.624805.633704.81520HepG2PCBP1
ZNF542ENSG00000240225.6445.40260299.403200.572905.567504.78740HepG2PUM1
ZNF542ENSG00000240225.6324.07950197.379600.715305.775104.94420HepG2PUS1
ZNF542ENSG00000240225.6700.25980339.783901.0432016.2401015.19560HepG2RBM22
ZNF542ENSG00000240225.6411.71970274.479900.584904.100103.29260HepG2RBM25
ZNF542ENSG00000240225.6336.23270208.687600.688003.878402.68980HepG2RBM27
ZNF542ENSG00000240225.6398.26960310.789100.357702.029301.55070HepG2NELFE
ZNF542ENSG00000240225.6401.76070297.173100.434902.325701.69050HepG2RPLP0
ZNF542ENSG00000240225.6373.78660205.813000.860804.872703.63470HepG2RPS10
ZNF542ENSG00000240225.6346.63610192.467100.848705.653804.53490HepG2RPS2
ZNF542ENSG00000240225.6255.06710160.641100.666902.856102.04360HepG2RPS3A
ZNF542ENSG00000240225.6253.47250158.774100.674802.734901.95200HepG2RRP9
ZNF542ENSG00000240225.6215.26850127.917100.750803.607102.52850HepG2SERBP1
ZNF542ENSG00000240225.6569.46150283.208101.007608.456807.22600HepG2SF3A3
ZNF542ENSG00000240225.6414.10330216.667000.934407.600806.48350HepG2SF3B1
ZNF542ENSG00000240225.6305.18280190.353400.680905.188104.35430HepG2SMN1
ZNF542ENSG00000240225.6404.58030303.468100.414802.687602.22020HepG2SRSF1
ZNF542ENSG00000240225.6373.52910278.478200.423602.608401.99640HepG2SRSF5
ZNF542ENSG00000240225.6613.93940333.190900.8816013.1242012.17160HepG2SSB
ZNF542ENSG00000240225.6370.29430213.404700.795005.508404.53840HepG2TARDBP
ZNF542ENSG00000240225.6358.72600196.039500.871603.529802.33020HepG2TBRG4
ZNF542ENSG00000240225.6163.59920250.63130-0.615403.266502.36290HepG2TIA1
ZNF542ENSG00000240225.6466.05090197.572201.2380012.1571010.81160HepG2U2AF1
ZNF542ENSG00000240225.6352.01420258.165100.447202.721901.68110HepG2UTP18
ZNF542ENSG00000240225.6444.20200242.487800.873209.467808.46820HepG2UTP3
ZNF542ENSG00000240225.6401.42600264.548900.601503.910802.47880K562AARS
ZNF542ENSG00000240225.6301.00330432.40790-0.522603.957603.30130K562AGGF1
ZNF542ENSG00000240225.6312.94010449.93210-0.523803.451902.72000K562AKAP8L
ZNF542ENSG00000240225.61008.75320629.884600.679306.448905.61420K562AQR
ZNF542ENSG00000240225.6721.56400482.118500.581602.796301.72640K562CNOT7
ZNF542ENSG00000240225.61235.45900881.238900.487304.227803.01430K562CELF1
ZNF542ENSG00000240225.6795.47340498.530300.674006.326305.39850K562DDX47
ZNF542ENSG00000240225.6522.87230359.268300.541303.349701.47250K562DDX51
ZNF542ENSG00000240225.6383.93880536.08090-0.481603.948403.11280K562EIF2S2
ZNF542ENSG00000240225.6311.18400157.523200.982104.676703.33660K562EIF3A
ZNF542ENSG00000240225.6508.19720356.144000.512802.882001.82520K562EIF3D
ZNF542ENSG00000240225.6455.24690354.569800.360502.159201.44980K562EIF3G
ZNF542ENSG00000240225.6404.57530264.424200.613504.104303.10680K562EIF4A3
ZNF542ENSG00000240225.61011.12570716.923900.496006.842005.38560K562EIF4G2
ZNF542ENSG00000240225.6605.48830274.986601.1386017.4918016.08210K562FXR1
ZNF542ENSG00000240225.6543.70140294.205400.885906.764105.55150K562G3BP2
ZNF542ENSG00000240225.6502.27590385.223600.382702.406101.40730K562HNRNPA1
ZNF542ENSG00000240225.6296.34030426.60060-0.525603.928702.85850K562HNRNPU
ZNF542ENSG00000240225.6735.36120440.120600.740503.920502.20710K562ILF2
ZNF542ENSG00000240225.6321.41080477.51820-0.571104.048503.02530K562KIF1C
ZNF542ENSG00000240225.6397.39130534.93710-0.428802.832001.90980K562MBNL1
ZNF542ENSG00000240225.6702.54810463.175200.600903.191401.85170K562PABPC1
ZNF542ENSG00000240225.6409.15850316.388600.370902.069301.37730K562POLR2G
ZNF542ENSG00000240225.6555.00030323.688700.777806.352605.21680K562PRPF8
ZNF542ENSG00000240225.61068.86420782.253800.450304.273603.26580K562PUF60
ZNF542ENSG00000240225.61206.85990831.796300.536907.485105.65900K562PUM1
ZNF542ENSG00000240225.6253.46810446.26590-0.816106.407705.62050K562PUS1
ZNF542ENSG00000240225.6268.81740434.77190-0.693605.619904.80040K562RBM15
ZNF542ENSG00000240225.6394.88530281.901600.486102.776301.69200K562SAFB
ZNF542ENSG00000240225.6180.08100321.44270-0.835902.547601.41220K562SF1
ZNF542ENSG00000240225.6549.20130428.748400.357102.664401.74280K562SRPK2
ZNF542ENSG00000240225.6435.79190313.396200.475602.437001.48830K562SUPV3L1
ZNF542ENSG00000240225.6501.25000317.342400.659405.923504.71390K562SYNCRIP
ZNF542ENSG00000240225.6432.10620285.350400.598603.584002.30490K562U2AF1
ZNF542ENSG00000240225.6453.98180294.649300.623505.259404.15830K562U2AF2
ZNF542ENSG00000240225.6568.90040449.754700.338902.384801.71500K562UPF1
ZNF542ENSG00000240225.6592.30980400.160900.565706.305905.07900K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF542 is not available on ENCORE database.





8 RBPs can affect the splicing of ZNF542 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZNF542ENSG00000240225.6chr19+5688605456886194568848995688499256888235568909220.285000.000140.00403includedK562SRSF1
SEZNF542ENSG00000240225.6chr19+5688605456886126568848995688499256888235568893410.068000.002920.03436includedHepG2U2AF2
SEZNF542ENSG00000240225.6chr19+5688064756880706568801895688030556884525568846520.320000.001000.01226includedK562AQR
SEZNF542ENSG00000240225.6chr19+5688605456886194568848995688499256888235568909220.066000.000000.00087includedK562DROSHA
SEZNF542ENSG00000240225.6chr19+5688605456886126568848995688499256888235568893410.107000.000150.01109includedHepG2SFPQ
SEZNF542ENSG00000240225.6chr19+5688605456886126568848995688499256888235568893410.206000.000440.05055includedHepG2LARP4
SEZNF542ENSG00000240225.6chr19+5688605456886126568848995688499256888235568893410.160000.000000.00103includedHepG2HNRNPUL1
SEZNF542ENSG00000240225.6chr19+5688605456886194568848995688499256888235568909220.088000.000420.05105includedHepG2RBFOX2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF542 is not avaliable on ENCORE database.