VPS26A

General Information

Gene Name       : VPS26A
Gene ID             : ENSG00000122958.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: VPS26A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VPS26AENSG00000122958.1428.2521.1324.69ENCSR000AEF
HepG2VPS26AENSG00000122958.1419.0546.0332.54ENCSR985KAT
K562VPS26AENSG00000122958.1459.1757.8058.48ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VPS26A is not avaliable on ENCORE database.



Proteins bound to RNA
  • VPS26A RNA is bound by 13 proteins.  







eCLIP assay for VPS26A is not avaliable on ENCORE database.





13 proteins are bound to VPS26A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr107093232770932425+3'-UTR4.424944.77733K562IGF2BP2
chr107093255770932601+3'-UTR4.740318.78414K562PUM2
chr107093225070932298+3'-UTR4.178534.61859K562IGF2BP1
chr107093233770932405+3'-UTR3.115893.46769K562YBX3
chr107093121170931255+3'-UTR3.8213016.00523K562PUM2
chr107093232970932412+3'-UTR3.131974.61266K562IGF2BP1
chr107093173070931796+3'-UTR3.716216.99379K562TIA1
chr107093126870931285+3'-UTR5.044065.66560K562TIA1
chr107093136170931440+3'-UTR3.6259512.91015K562PABPC4
chr107093128570931329+3'-UTR5.118035.43878K562TIA1
chr107093211270932197+3'-UTR3.195854.61266K562IGF2BP1
chr107089265370892686+5'-UTR,CDS,intron-Distal,intron-Proximal3.844555.42720K562UCHL5
chr107088395370884037+5'-UTR,CDS,intron-Proximal3.8045812.79258K562DDX3X
chr107088395370884034+5'-UTR3.466156.09767K562UCHL5
chr107088396470884045+5'-UTR,CDS,intron-Proximal3.594644.60537HepG2NCBP2
chr107089265370892749+5'-UTR,CDS,intron-Distal,intron-Proximal3.9933115.95983K562DDX3X
chr107089059870890712+intron-Distal3.720303.02234K562KHSRP
chr107090047570900523+intron-Distal3.507645.60020HepG2QKI
chr107089859470898699+intron-Distal6.3841413.80520K562QKI
chr107089965870899762+intron-Distal3.071014.44627K562KHSRP
chr107089716670897313+intron-Distal4.623055.42395HepG2HNRNPM
chr107091211170912174+intron-Distal3.025103.42428K562HNRNPL
chr107089799170898109+intron-Distal3.244008.54023K562KHSRP
chr107089859570898748+intron-Distal5.9294412.92705HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VPS26A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VPS26A is not available on ENCORE database.

  • 70 RBPs can affect the levels of VPS26A.  








The Knockdown/knockout RNA-Seq assay for VPS26A is not available on ENCORE database.





70 RBPs can affect the gene expression of VPS26A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VPS26AENSG00000122958.10718.484601533.29900-1.0936014.3876013.27310HepG2AKAP1
VPS26AENSG00000122958.101226.024501540.84970-0.329703.166802.43910HepG2AUH
VPS26AENSG00000122958.10699.28660931.35850-0.413502.261401.44950HepG2BCLAF1
VPS26AENSG00000122958.10605.03670901.27140-0.574907.273705.64020HepG2YBX3
VPS26AENSG00000122958.101110.181801459.86710-0.395002.835902.08600HepG2DAZAP1
VPS26AENSG00000122958.10987.53140765.511500.367302.703101.80190HepG2DDX24
VPS26AENSG00000122958.10697.197501053.75720-0.595904.193603.26350HepG2DDX55
VPS26AENSG00000122958.10580.79640853.60620-0.555505.273003.94810HepG2DHX30
VPS26AENSG00000122958.10624.27410877.13480-0.490607.202106.21890HepG2DNAJC2
VPS26AENSG00000122958.10876.024801212.95460-0.469503.650302.97460HepG2EIF2S1
VPS26AENSG00000122958.10930.08680738.904200.331902.367901.36860HepG2EIF3G
VPS26AENSG00000122958.101006.672301379.39620-0.454402.292701.54700HepG2EIF4G2
VPS26AENSG00000122958.101097.62780856.949700.357002.734601.90390HepG2EWSR1
VPS26AENSG00000122958.10467.71910925.86740-0.985204.623803.31790HepG2FTO
VPS26AENSG00000122958.10463.90150643.68240-0.472503.574902.68700HepG2FUBP3
VPS26AENSG00000122958.10924.971801254.59720-0.439703.091202.38970HepG2G3BP1
VPS26AENSG00000122958.10778.62520993.85090-0.352101.937201.34510HepG2HNRNPC
VPS26AENSG00000122958.10705.550601042.05110-0.562608.342407.18380HepG2HNRNPF
VPS26AENSG00000122958.10951.525001270.22400-0.416803.337502.57340HepG2HNRNPK
VPS26AENSG00000122958.10893.196901329.94920-0.574304.163403.34940HepG2HNRNPL
VPS26AENSG00000122958.10752.46890987.28260-0.391804.647403.87880HepG2HNRNPU
VPS26AENSG00000122958.10743.542001026.12450-0.464704.783003.85600HepG2IGF2BP1
VPS26AENSG00000122958.101001.079601275.29650-0.349302.225701.61230HepG2IGF2BP2
VPS26AENSG00000122958.102183.679301360.439100.682607.170906.18980HepG2MATR3
VPS26AENSG00000122958.10870.651101447.57970-0.733505.482204.41450HepG2NOL12
VPS26AENSG00000122958.101051.36130717.272100.551602.701201.82520HepG2PABPC1
VPS26AENSG00000122958.101088.010901257.29500-0.208601.828101.31770HepG2PCBP1
VPS26AENSG00000122958.10663.22150880.58290-0.409002.893102.14210HepG2PPIL4
VPS26AENSG00000122958.10808.206001016.51780-0.330802.584901.75430HepG2RBM15
VPS26AENSG00000122958.101833.899201478.605800.310603.752103.17300HepG2RBM22
VPS26AENSG00000122958.101509.669101257.488000.263601.981201.40330HepG2RBM25
VPS26AENSG00000122958.101022.11680804.300600.345702.144201.44450HepG2RRP9
VPS26AENSG00000122958.10584.16950879.23820-0.589909.019107.96090HepG2SAFB2
VPS26AENSG00000122958.101624.80660944.874300.782007.449206.30660HepG2SF3A3
VPS26AENSG00000122958.101967.419401670.051900.236303.188302.66310HepG2SRFBP1
VPS26AENSG00000122958.101788.337201390.281500.363105.241104.64300HepG2SRSF1
VPS26AENSG00000122958.10815.788601023.77500-0.327603.200002.45750HepG2SRSF7
VPS26AENSG00000122958.10734.46770974.49790-0.408002.825702.09470HepG2TARDBP
VPS26AENSG00000122958.10398.30920959.45310-1.2683026.9608025.69620HepG2TIAL1
VPS26AENSG00000122958.10598.80490967.89720-0.692809.044108.11510HepG2TRIM56
VPS26AENSG00000122958.101012.78250809.017100.324003.188802.55420HepG2UTP3
VPS26AENSG00000122958.10786.057801032.67170-0.393702.260301.59950HepG2XRN2
VPS26AENSG00000122958.101118.95050921.594800.279803.238002.66030HepG2ZNF622
VPS26AENSG00000122958.101083.281301567.31750-0.532908.883006.22830K562AKAP1
VPS26AENSG00000122958.105158.207003507.068200.556507.976707.06660K562AQR
VPS26AENSG00000122958.10567.28660809.44480-0.512903.074201.95370K562CCAR1
VPS26AENSG00000122958.102448.851302929.29990-0.258502.409901.38470K562CPEB4
VPS26AENSG00000122958.101193.267901588.15030-0.412404.288802.95100K562DDX3X
VPS26AENSG00000122958.101249.270001659.25500-0.409503.877802.91100K562EIF4A3
VPS26AENSG00000122958.102258.931801725.560500.388506.019405.17760K562FXR1
VPS26AENSG00000122958.102810.277601971.295400.511502.710602.01280K562G3BP2
VPS26AENSG00000122958.101864.176102274.21940-0.286802.380001.38770K562HNRNPA1
VPS26AENSG00000122958.101364.758801808.37820-0.406104.223903.50260K562HNRNPC
VPS26AENSG00000122958.101255.452101614.75190-0.363103.296702.04140K562HNRNPF
VPS26AENSG00000122958.101873.364702739.38420-0.548206.550504.85620K562HNRNPL
VPS26AENSG00000122958.101769.348302403.49890-0.441903.326402.16500K562IGF2BP2
VPS26AENSG00000122958.101918.721202444.96060-0.349703.158101.86290K562IGF2BP3
VPS26AENSG00000122958.101236.401701612.19900-0.382903.739801.88690K562LSM11
VPS26AENSG00000122958.101473.984802105.74940-0.514608.286906.95690K562MTPAP
VPS26AENSG00000122958.102842.126202153.384600.400302.556101.71530K562NAA15
VPS26AENSG00000122958.101288.822001780.31810-0.466103.940002.10460K562NUSAP1
VPS26AENSG00000122958.101334.897201765.43700-0.403303.668201.99110K562PHF6
VPS26AENSG00000122958.102298.343201567.654000.551906.602705.44260K562PRPF8
VPS26AENSG00000122958.10994.953901621.36370-0.704509.693207.77200K562PSIP1
VPS26AENSG00000122958.102973.567202454.764400.276502.690802.03500K562PTBP1
VPS26AENSG00000122958.105398.033804424.886000.286702.870702.03970K562PUF60
VPS26AENSG00000122958.103814.672004611.53460-0.273702.235801.37110K562PUM2
VPS26AENSG00000122958.103742.817902562.884500.546306.476805.68640K562PUS1
VPS26AENSG00000122958.101148.059101479.10720-0.365503.558102.43470K562RCC2
VPS26AENSG00000122958.10918.223401402.17240-0.610704.699303.26020K562SRFBP1
VPS26AENSG00000122958.102035.349702406.41070-0.241601.970601.36160K562SRSF1
VPS26AENSG00000122958.101094.827801394.33330-0.348902.986301.88270K562SRSF4
VPS26AENSG00000122958.102242.632002804.69390-0.322702.511901.32280K562STAU1
VPS26AENSG00000122958.101725.975701388.757600.313503.096302.22580K562SYNCRIP
VPS26AENSG00000122958.101816.207402435.61020-0.423403.436902.64470K562TARDBP
VPS26AENSG00000122958.101805.318702349.37750-0.380004.327503.26990K562TIA1
VPS26AENSG00000122958.10899.914701559.50220-0.793209.738807.88830K562TIAL1
VPS26AENSG00000122958.101128.513101656.57180-0.553806.452604.87060K562TRIM56
VPS26AENSG00000122958.101284.603302480.98270-0.9496019.6102017.89000K562UPF1
VPS26AENSG00000122958.103318.973603951.02390-0.251502.127701.38130K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VPS26A is not available on ENCORE database.





18 RBPs can affect the splicing of VPS26A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEVPS26AENSG00000122958.10chr10+7091556770915643708926537089280370916762709169190.098000.000820.06635includedHepG2G3BP1
SEVPS26AENSG00000122958.10chr10+709155677091564370892653708928037091676270916919-0.102000.000260.09985excludedK562SMNDC1
SEVPS26AENSG00000122958.10chr10+709155677091564370892653708928037091676270916919-0.072000.002090.05524excludedK562AKAP8L
SEVPS26AENSG00000122958.10chr10+7091556770915643708926537089280370916762709169190.126000.000760.05948includedHepG2TBRG4
SEVPS26AENSG00000122958.10chr10+709282447092838770925746709258667093091170932612-0.198000.000000.00000excludedK562AQR
SEVPS26AENSG00000122958.10chr10+709155677091564370892653708928037091676270916919-0.152000.000000.00000excludedK562AQR
SEVPS26AENSG00000122958.10chr10+7091556770915643708926537089280370916762709169190.088000.000080.01099includedHepG2DDX3X
SEVPS26AENSG00000122958.10chr10+709155677091564370892653708928037091676270916919-0.185000.000000.00084excludedHepG2TIA1
SEVPS26AENSG00000122958.10chr10+709155677091564370892653708928037091676270916919-0.221000.000000.00000excludedK562PUS1
SEVPS26AENSG00000122958.10chr10+7091556770915643708926537089280370916762709169190.102000.000020.00265includedHepG2NCBP2
SEVPS26AENSG00000122958.10chr10+7091556770915643708926537089280370916762709169190.106000.000000.00000includedHepG2MATR3
SEVPS26AENSG00000122958.10chr10+7091556770915643708926537089280370916762709169190.091000.000050.01132includedHepG2LARP4
SEVPS26AENSG00000122958.10chr10+7091556770915643708926537089280370916762709169190.080000.000770.05463includedHepG2IGF2BP3
SEVPS26AENSG00000122958.10chr10+709155677091564370892653708928037091676270916919-0.148000.000000.00045excludedK562UTP18
SEVPS26AENSG00000122958.10chr10+709155677091564370892653708928037091676270916919-0.082000.000160.00892excludedK562TARDBP
SEVPS26AENSG00000122958.10chr10+709155677091564370892653708928037091676270916919-0.093000.000160.00897excludedK562HNRNPU
SEVPS26AENSG00000122958.10chr10+709155677091564370892653708928037091676270916919-0.168000.000000.00000excludedK562RBM15
SEVPS26AENSG00000122958.10chr10+709155677091564370892653708928037091676270916919-0.133000.000000.00002excludedK562AGGF1
A3SSVPS26AENSG00000122958.10chr10+7092822670928387709282447092838770925734709258660.067000.000000.00000longerK562AQR
MXEVPS26AENSG00000122958.10chr10+7091676270916919709178757091796770892653708928037092216170922268-0.209000.000000.000022includedHepG2MATR3
MXEVPS26AENSG00000122958.10chr10+7091676270916919709178027091796770892653708928037092216170922268-0.212000.000000.000022includedHepG2MATR3
MXEVPS26AENSG00000122958.10chr10+70916762709169197091787570917967708926537089280370922161709222680.155000.001180.036451includedK562RBM15
MXEVPS26AENSG00000122958.10chr10+70916762709169197091780270917967708926537089280370922161709222680.158000.000570.021391includedK562RBM15
MXEVPS26AENSG00000122958.10chr10+70916762709169197091780270917967708926537089280370922161709222680.227000.000000.000001includedK562PUS1
MXEVPS26AENSG00000122958.10chr10+70916762709169197091787570917967708926537089280370922161709222680.140000.001000.036751includedK562AGGF1
MXEVPS26AENSG00000122958.10chr10+70916762709169197091780270917967708926537089280370922161709222680.145000.000570.024341includedK562AGGF1
MXEVPS26AENSG00000122958.10chr10+70925719709258667092824470928387709221617092226870930911709326120.216000.000000.000001includedK562AQR
MXEVPS26AENSG00000122958.10chr10+70925719709258667092821670928387709221617092226870930911709326120.218000.000000.000001includedK562AQR
MXEVPS26AENSG00000122958.10chr10+70916762709169197091780270917967708926537089280370922161709222680.102000.001000.009111includedK562AQR
MXEVPS26AENSG00000122958.10chr10+70916762709169197091776670917967708926537089280370922161709222680.137000.000110.001281includedK562AQR
MXEVPS26AENSG00000122958.10chr10+70916762709169197091787570917967708926537089280370922161709222680.139000.000080.000951includedK562AQR
MXEVPS26AENSG00000122958.10chr10+70925734709258667092824470928387709221617092226870930911709326120.216000.000000.000001includedK562AQR
MXEVPS26AENSG00000122958.10chr10+70925734709258667092821670928387709221617092226870930911709326120.218000.000000.000001includedK562AQR
MXEVPS26AENSG00000122958.10chr10+70925746709258667092824470928387709221617092226870930911709326120.218000.000000.000001includedK562AQR
MXEVPS26AENSG00000122958.10chr10+70925746709258667092821670928387709221617092226870930911709326120.220000.000000.000001includedK562AQR
MXEVPS26AENSG00000122958.10chr10+7091676270916919709178757091796770915518709156437092216170922268-0.132000.000100.001222includedK562AQR
MXEVPS26AENSG00000122958.10chr10+70916762709169197091787570917967708926537089280370922161709222680.142000.000330.011501includedK562TARDBP
MXEVPS26AENSG00000122958.10chr10+70916762709169197091780270917967708926537089280370922161709222680.126000.001010.027011includedK562TARDBP
MXEVPS26AENSG00000122958.10chr10+70916762709169197091780270917967708926537089280370922161709222680.172000.000200.035421includedK562SMNDC1
MXEVPS26AENSG00000122958.10chr10+7091676270916919709178027091796770892653708928037092216170922268-0.264000.000230.019312includedHepG2TBRG4
MXEVPS26AENSG00000122958.10chr10+70925797709258667092824470928387709221617092226870930911709326120.103000.001510.061161includedK562SAFB
MXEVPS26AENSG00000122958.10chr10+7091676270916919709178027091796770892653708928037092216170922268-0.165000.001140.057832includedHepG2DDX3X
MXEVPS26AENSG00000122958.10chr10+70916762709169197091780270917967708926537089280370922161709222680.107000.002810.098971includedK562TIA1
MXEVPS26AENSG00000122958.10chr10+7091676270916919709178027091796770892653708928037092216170922268-0.203000.000090.005182includedHepG2NCBP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for VPS26A is not avaliable on ENCORE database.