UBN1

General Information

Gene Name       : UBN1
Gene ID             : ENSG00000118900.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: UBN1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878UBN1ENSG00000118900.1411.0715.7613.41ENCSR000AEF
HepG2UBN1ENSG00000118900.1411.6715.0413.36ENCSR985KAT
K562UBN1ENSG00000118900.1422.5623.0322.80ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for UBN1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • UBN1 RNA is bound by 32 proteins.  







eCLIP assay for UBN1 is not avaliable on ENCORE database.





32 proteins are bound to UBN1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1649320924932153+3'-UTR3.238438.21468K562UPF1
chr1649321454932225+3'-UTR3.804234.05658K562DDX6
chr1649302794930367+3'-UTR3.913923.35877HepG2UPF1
chr1649317534931820+3'-UTR4.4385517.66749K562UPF1
chr1649321814932224+3'-UTR3.985728.99604K562UPF1
chr1649310774931168+3'-UTR4.0711919.66292K562UPF1
chr1649308074930850+3'-UTR3.8604610.67158K562LIN28B
chr1649319374931966+3'-UTR3.556735.95678K562UPF1
chr1649317464931795+3'-UTR3.684217.47094K562PUM2
chr1649320994932145+3'-UTR3.136543.42950K562DDX6
chr1649322494932285+3'-UTR4.384058.66095K562UPF1
chr1649310974931154+3'-UTR4.273514.19989HepG2UPF1
chr1649315024931529+3'-UTR3.269704.11795K562YBX3
chr1649312534931351+3'-UTR4.2000020.81716K562UPF1
chr1649308384930910+3'-UTR3.079893.64207HepG2LIN28B
chr1649308504930901+3'-UTR5.4726525.65445K562LIN28B
chr1649188854918945+3'-UTR,CDS,intron-Distal,intron-Proximal4.906523.70131HepG2PRPF8
chr1649318204931902+3'-UTR3.3303417.51438K562UPF1
chr1649318114931901+3'-UTR3.995056.47490HepG2UPF1
chr1649313514931400+3'-UTR4.614908.85840K562UPF1
chr1649311944931250+3'-UTR3.7792410.11337K562UPF1
chr1649106624910712+5'-UTR,CDS,intron-Proximal5.283827.49561HepG2BCLAF1
chr1648978524898045+5'-UTR4.101525.87392HepG2ZNF800
chr1649107244910830+5'-UTR,CDS3.680874.49016HepG2FXR2
chr1648979534897967+5'-UTR3.634713.76880HepG2DDX3X
chr1648978794897919+5'-UTR3.807764.73375HepG2DDX3X
chr1649098664909972+5'-UTR,CDS,intron-Proximal4.145547.71540K562TRA2A
chr1648980114898055+5'-UTR3.791043.56019HepG2GRWD1
chr1649099134909969+5'-UTR,CDS4.200203.34184HepG2GRWD1
chr1649098604909973+5'-UTR,CDS,intron-Proximal4.184447.95684K562CPSF6
chr1649107584910832+5'-UTR,CDS3.647089.11524K562UCHL5
chr1648975064897600+5'-UTR5.3977510.84022HepG2DDX3X
chr1649106724910794+5'-UTR,CDS3.263783.52390K562MTPAP
chr1649099194909974+5'-UTR,CDS,intron-Proximal3.432077.99874HepG2BUD13
chr1649108324910897+5'-UTR,CDS4.249318.23108K562UCHL5
chr1649108894910937+5'-UTR,CDS5.297087.93248K562RBM15
chr1649107004910816+5'-UTR,CDS4.894996.73025HepG2GRWD1
chr1649098664909979+5'-UTR,CDS,intron-Proximal4.4488210.89658HepG2BCLAF1
chr1649274594927526+5'-UTR,CDS,intron-Distal,intron-Proximal3.014593.54493HepG2PRPF8
chr1649273764927445+5'-UTR,CDS,intron-Distal,intron-Proximal3.869193.70903HepG2U2AF1
chr1649098654909971+5'-UTR,CDS,intron-Proximal3.469014.25328HepG2TRA2A
chr1649106974910869+5'-UTR,CDS3.3276213.68814K562PUM1
chr1648980064898048+5'-UTR3.344633.99908K562BUD13
chr1649090374909124+5'-UTR,CDS4.0421610.37409K562ZNF622
chr1649107064910805+5'-UTR,CDS4.1705911.06379K562ZNF622
chr1649107054910806+5'-UTR,CDS3.391533.88253HepG2HLTF
chr1649108684911082+5'-UTR,CDS,intron-Distal,intron-Proximal3.940353.94400HepG2UCHL5
chr1648976634897764+5'-UTR4.4414810.34792HepG2DDX3X
chr1649099524910020+5'-UTR,CDS,intron-Proximal3.238637.13900K562AQR
chr1649106634910836+5'-UTR,CDS,intron-Proximal3.277576.69056K562GRWD1
chr1649099094909971+5'-UTR,CDS,intron-Proximal3.460979.00124K562ZNF622
chr1649106634910758+5'-UTR,CDS,intron-Proximal6.4320322.10181K562UCHL5
chr1649099194909970+5'-UTR,CDS,intron-Proximal3.559628.23358K562UCHL5
chr1649106624910745+5'-UTR,CDS,intron-Proximal3.170149.97241K562DDX24
chr1649106624910697+5'-UTR,CDS,intron-Proximal4.138846.09867K562PUM1
chr1649107124910800+5'-UTR,CDS3.821417.65975HepG2BCLAF1
chr1649106604910753+5'-UTR,CDS,intron-Proximal4.244814.02380K562TRA2A
chr1649106624910705+5'-UTR,CDS,intron-Proximal4.605258.94008K562ZNF622
chr1648977644897850+5'-UTR4.864436.75419HepG2DDX3X
chr1649109824911078+CDS,intron-Distal,intron-Proximal7.5551361.77897K562LIN28B
chr1649251204925143+CDS3.263165.58962K562RBM15
chr1649251924925240+CDS3.791444.80676K562RBM15
chr1649212394921285+CDS,intron-Distal4.372793.31827HepG2GRWD1
chr1649208764920953+CDS4.124047.14937K562ZNF622
chr1649205244920576+CDS3.244234.30396K562UCHL5
chr1649208524920976+CDS,intron-Proximal4.3135214.13437K562UCHL5
chr1649202294920322+CDS4.072654.83756K562FMR1
chr1649201304920251+CDS,intron-Proximal4.400687.39218K562SF3B4
chr1649080274908076+CDS3.457556.18248K562UCHL5
chr1649245764924616+CDS4.3113613.65779K562RBM15
chr1649205344920592+CDS3.969123.31827HepG2GRWD1
chr1649201654920251+CDS,intron-Proximal4.404534.57682HepG2SF3B4
chr1649110404911126+CDS,intron-Distal,intron-Proximal4.276564.07395K562SRSF1
chr1649211484921214+CDS,intron-Distal,intron-Proximal3.285756.76654K562GRWD1
chr1649242084924247+CDS,intron-Proximal3.087694.38519K562BUD13
chr1649250264925093+CDS4.158383.27203K562IGF2BP2
chr1649244044924451+CDS3.927266.04229K562RBM15
chr1649085834908613+CDS4.111843.45943HepG2BCLAF1
chr1649086284908662+CDS3.335203.65452K562BUD13
chr1649251254925217+CDS3.324316.21602K562ZNF622
chr1649251434925192+CDS5.319189.33028K562RBM15
chr1649086274908710+CDS,intron-Proximal3.986075.26367K562AQR
chr1649211554921174+CDS,intron-Distal,intron-Proximal4.548044.55944K562ZNF622
chr1649252884925341+CDS4.144088.03807K562RBM15
chr1649029624903032+CDS3.313526.92192K562UCHL5
chr1649246204924665+CDS4.371279.80044K562RBM15
chr1649110094911097+CDS,intron-Distal,intron-Proximal3.849699.36208K562UCHL5
chr1649212134921296+CDS,intron-Distal4.7500312.63127K562UCHL5
chr1649209034920973+CDS3.062413.69127HepG2BCLAF1
chr1649029734903064+CDS3.190925.44868K562ZNF622
chr1649109994911103+CDS,intron-Distal,intron-Proximal3.568956.18332HepG2GRWD1
chr1649030104903131+CDS3.887677.06029HepG2GRWD1
chr1649209274920972+CDS3.915513.34184HepG2GRWD1
chr1649230634923125+CDS,intron-Proximal3.151534.07440K562PRPF8
chr1649242634924349+CDS5.6468012.14650K562RBM15
chr1649109854911081+CDS,intron-Distal,intron-Proximal5.3772619.53731HepG2LIN28B
chr1649211544921207+CDS,intron-Distal,intron-Proximal3.570806.32494K562UCHL5
chr1649085664908598+CDS,intron-Proximal3.045525.03210K562ZNF800
chr1649229714923078+CDS,intron-Proximal3.450804.83282K562EFTUD2
chr1649245614924576+CDS4.371279.80044K562RBM15
chr1649110014911135+CDS,intron-Distal,intron-Proximal3.141493.46298HepG2SRSF1
chr1649297294929801+intron-Distal4.898155.44904K562TARDBP
chr1649194834919556+intron-Distal4.569965.31505K562HNRNPM
chr1649275664927724+intron-Distal,intron-Proximal4.627163.27946HepG2HNRNPM
chr1649102644910340+intron-Distal3.833343.09122HepG2PTBP1
chr1649296954929731+intron-Distal4.270424.31871HepG2HNRNPM
chr1649296874929741+intron-Distal4.249614.28571K562HNRNPM
chr1649275184927564+intron-Distal,intron-Proximal5.190464.40230HepG2RBM22
chr1649196034919670+intron-Distal3.550103.10641K562HNRNPM
chr1649296524929729+intron-Distal4.280413.87294K562TARDBP
chr1649277024927785+intron-Distal4.684415.83754K562HNRNPM
chr1649275964927702+intron-Distal3.831885.77184K562HNRNPM
chr1649297554929805+intron-Distal3.843703.28572K562HNRNPM
chr1649278304927884+intron-Distal4.073683.02181K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for UBN1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for UBN1 is not available on ENCORE database.

  • 59 RBPs can affect the levels of UBN1.  








The Knockdown/knockout RNA-Seq assay for UBN1 is not available on ENCORE database.





59 RBPs can affect the gene expression of UBN1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
UBN1ENSG00000118900.10977.288301351.13150-0.467303.378202.34200HepG2ABCF1
UBN1ENSG00000118900.101033.977301367.81670-0.403702.487001.98030HepG2AKAP1
UBN1ENSG00000118900.10775.50660957.04910-0.303502.145501.46070HepG2CALR
UBN1ENSG00000118900.10895.276901181.53370-0.400305.934205.02740HepG2CKAP4
UBN1ENSG00000118900.10795.966301234.53330-0.633206.708305.67340HepG2CPSF6
UBN1ENSG00000118900.101149.51910863.134000.413303.452502.70200HepG2DDX21
UBN1ENSG00000118900.101692.553201310.305000.369202.650702.03710HepG2DDX3X
UBN1ENSG00000118900.10806.196801401.90580-0.798205.038803.73340HepG2DDX59
UBN1ENSG00000118900.10532.96430794.60960-0.576203.859102.53880HepG2AGO1
UBN1ENSG00000118900.101643.989801195.837200.459103.397102.69060HepG2EIF4A3
UBN1ENSG00000118900.101571.663101164.228800.432802.495201.84060HepG2EIF4B
UBN1ENSG00000118900.101711.283601959.11390-0.195102.042501.50890HepG2ETF1
UBN1ENSG00000118900.101490.351501188.076400.326902.234501.43890HepG2G3BP2
UBN1ENSG00000118900.10697.595001399.41870-1.0044013.2970011.99400HepG2GPKOW
UBN1ENSG00000118900.10672.58420878.41090-0.385204.209003.47450HepG2HNRNPU
UBN1ENSG00000118900.10880.029901384.53090-0.653805.385703.69450HepG2HSPD1
UBN1ENSG00000118900.10887.670001080.33850-0.283403.193602.10020HepG2KIF1C
UBN1ENSG00000118900.101975.902201206.833000.711208.394607.26650HepG2MAGOH
UBN1ENSG00000118900.101513.572501168.419300.373305.050204.26770HepG2PCBP1
UBN1ENSG00000118900.10653.84540952.98500-0.543503.006801.74400HepG2PRPF6
UBN1ENSG00000118900.10571.69700777.69110-0.443902.698201.89950HepG2PRPF8
UBN1ENSG00000118900.101372.680701188.885800.207301.924701.45270HepG2PTBP1
UBN1ENSG00000118900.10880.345001228.90140-0.481204.883704.11910HepG2PUF60
UBN1ENSG00000118900.101584.260901303.578000.281202.473701.83970HepG2PUM2
UBN1ENSG00000118900.101608.033401287.644900.320503.170202.50890HepG2QKI
UBN1ENSG00000118900.101943.23630874.752801.1514010.333109.03480HepG2RAVER1
UBN1ENSG00000118900.101032.369301427.76830-0.467805.519804.35860HepG2RBM15
UBN1ENSG00000118900.101985.089801637.437700.277702.975302.44350HepG2RBM22
UBN1ENSG00000118900.101663.926701348.446300.303202.136001.52590HepG2RPLP0
UBN1ENSG00000118900.10955.20010675.390500.500004.139002.99330HepG2SERBP1
UBN1ENSG00000118900.102132.144701426.145900.580103.974703.15970HepG2SF3A3
UBN1ENSG00000118900.101786.588601321.862100.434504.054003.21510HepG2SF3B1
UBN1ENSG00000118900.101470.247201237.827500.248102.403301.84650HepG2SF3B4
UBN1ENSG00000118900.10925.344901470.80770-0.668504.594003.57710HepG2SNRNP70
UBN1ENSG00000118900.101920.224201422.362600.432902.806601.79710HepG2SRSF3
UBN1ENSG00000118900.102112.164701605.651600.395506.888906.14930HepG2SSB
UBN1ENSG00000118900.10708.090201003.52260-0.503103.292502.56210HepG2SUPV3L1
UBN1ENSG00000118900.10491.00460672.63590-0.454102.887401.87060HepG2TFIP11
UBN1ENSG00000118900.101462.913201167.229700.325702.445901.85230HepG2U2AF1
UBN1ENSG00000118900.10970.523301221.08770-0.331303.813403.12760HepG2UTP3
UBN1ENSG00000118900.10892.313201035.58740-0.214801.916801.34320HepG2ZC3H8
UBN1ENSG00000118900.101666.656101391.007900.260703.666403.06090HepG2ZNF622
UBN1ENSG00000118900.106387.076302880.799801.1486031.2962029.51490K562AQR
UBN1ENSG00000118900.104034.970803098.374400.380907.583706.57650K562DDX47
UBN1ENSG00000118900.102477.252601774.564600.481203.503102.04860K562EEF2
UBN1ENSG00000118900.102389.125102737.14350-0.196202.025201.39260K562EIF2S2
UBN1ENSG00000118900.101849.431501317.856700.488807.349806.06430K562EIF3G
UBN1ENSG00000118900.102726.900901828.237200.576708.094606.69230K562EIF4A3
UBN1ENSG00000118900.105209.311803751.227900.4736010.402308.62620K562EIF4G2
UBN1ENSG00000118900.102420.122501959.519700.304502.349001.55900K562FMR1
UBN1ENSG00000118900.102070.763901660.922800.318102.160801.35750K562FTO
UBN1ENSG00000118900.102406.231001901.293000.339704.854604.08420K562FXR1
UBN1ENSG00000118900.101032.758601320.77050-0.354901.901601.32780K562G3BP2
UBN1ENSG00000118900.103045.743303647.33210-0.260002.422801.71310K562GRSF1
UBN1ENSG00000118900.102184.289402608.63070-0.256102.817401.91550K562HNRNPU
UBN1ENSG00000118900.102161.921702992.34310-0.469005.230104.15280K562HSPD1
UBN1ENSG00000118900.102441.289501960.218800.316503.052302.16890K562MAGOH
UBN1ENSG00000118900.102734.698802404.265400.185702.187801.46430K562MTPAP
UBN1ENSG00000118900.103171.234802671.389400.247405.039004.07400K562NSUN2
UBN1ENSG00000118900.102022.218102505.54510-0.309202.487801.71440K562PPIG
UBN1ENSG00000118900.102299.285601904.499500.271702.462201.83020K562PTBP1
UBN1ENSG00000118900.105127.811504092.845100.325103.193602.31870K562PUF60
UBN1ENSG00000118900.102249.753001699.434000.404603.005602.15410K562RPS19
UBN1ENSG00000118900.103134.043502635.928100.249603.070702.21250K562SF3A3
UBN1ENSG00000118900.102386.641301748.719600.448603.639602.51640K562SF3B1
UBN1ENSG00000118900.101674.905601373.082400.286602.602601.77650K562SF3B4
UBN1ENSG00000118900.102819.178402344.648100.265803.311902.02150K562SRSF7
UBN1ENSG00000118900.102313.285201615.305300.518004.826803.45370K562SUPV3L1
UBN1ENSG00000118900.103662.681402832.528100.370707.614506.49570K562UPF1
UBN1ENSG00000118900.103477.262802520.345700.4642012.5307010.88880K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for UBN1 is not available on ENCORE database.





6 RBPs can affect the splicing of UBN1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEUBN1ENSG00000118900.10chr16+4927385492747549268714927112493008349323610.338000.003250.05375includedK562SRSF1
SEUBN1ENSG00000118900.10chr16+492793949280504927385492747549300834932361-0.086000.003600.05838excludedK562SRSF1
SEUBN1ENSG00000118900.10chr16+492115549213024920855492097349228844922935-0.183000.002410.04225excludedK562SF3B4
SEUBN1ENSG00000118900.10chr16+492738549274754926871492711249300834932361-0.391000.002830.04769excludedK562SF3B4
SEUBN1ENSG00000118900.10chr16+492738549274754926871492711249300834932361-0.362000.000610.01355excludedHepG2U2AF1
SEUBN1ENSG00000118900.10chr16+492738549274754926871492711249300834932361-0.267000.000000.00004excludedK562AQR
SEUBN1ENSG00000118900.10chr16+492115549213024920844492097349228844922935-0.159000.000420.00819excludedK562PUS1
SEUBN1ENSG00000118900.10chr16+492738549274754926871492711249300834932361-0.529000.000010.00064excludedHepG2SF3A3
A5SSUBN1ENSG00000118900.10chr16+4920844492105149208444920973492115549213020.092000.000000.00000longerK562AQR
MXEUBN1ENSG00000118900.10chr16+492107549213024922884492293549208884920973492303149230740.111000.000250.002731includedK562AQR
MXEUBN1ENSG00000118900.10chr16+492107549213024922859492293549208884920973492303149230740.129000.001200.010711includedK562AQR
MXEUBN1ENSG00000118900.10chr16+492107549213024922859492307449208884920973492421149254350.138000.006280.043491includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for UBN1 is not avaliable on ENCORE database.