TRIM11

General Information

Gene Name : TRIM11
Gene ID : ENSG00000154370.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TRIM11)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TRIM11	ENSG00000154370.15	4.09	7.69	5.89	ENCSR000AEF
HepG2	TRIM11	ENSG00000154370.15	10.18	7.43	8.80	ENCSR985KAT
K562	TRIM11	ENSG00000154370.15	24.32	23.51	23.91	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TRIM11 is not avaliable on ENCORE database.

Proteins bound to RNA

TRIM11 RNA is bound by 20 proteins.

eCLIP assay for TRIM11 is not avaliable on ENCORE database.

20 proteins are bound to TRIM11 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	228581739	228581805	-	3'-UTR,intron-Distal	3.79788	4.21638	K562	SLTM
chr1	228581729	228581840	-	3'-UTR,intron-Distal	6.31753	16.07924	K562	UPF1
chr1	228584598	228584628	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.09293	5.69951	K562	AQR
chr1	228581529	228581579	-	3'-UTR,intron-Distal	3.06212	6.32251	K562	UPF1
chr1	228584581	228584709	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.32517	11.16708	HepG2	PRPF8
chr1	228581388	228581453	-	3'-UTR,intron-Distal	4.07734	3.31110	K562	TIA1
chr1	228584643	228584688	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.39869	3.59112	HepG2	PPIG
chr1	228581911	228581996	-	3'-UTR,intron-Distal	3.37750	8.33876	K562	UPF1
chr1	228581397	228581495	-	3'-UTR,intron-Distal	5.17858	21.82287	K562	UPF1
chr1	228584606	228584821	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.88365	12.86254	HepG2	EFTUD2
chr1	228581607	228581658	-	3'-UTR,intron-Distal	4.41385	7.89119	K562	UPF1
chr1	228582337	228582348	-	3'-UTR,intron-Distal	4.32561	3.53404	K562	HNRNPM
chr1	228582180	228582227	-	3'-UTR,intron-Distal	4.08029	6.48274	K562	UPF1
chr1	228584735	228584809	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.05934	6.95984	K562	EFTUD2
chr1	228582301	228582337	-	3'-UTR,intron-Distal	3.47967	3.10628	K562	HNRNPM
chr1	228584607	228584664	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.33227	4.27476	HepG2	AQR
chr1	228593430	228593550	-	5'-UTR,intron-Distal	4.24331	7.77977	K562	CSTF2T
chr1	228594285	228594379	-	5'-UTR,intron-Distal	3.05083	4.35063	K562	GEMIN5
chr1	228589832	228589943	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.65228	5.32906	HepG2	AQR
chr1	228589844	228589926	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.12826	4.07325	HepG2	SF3B4
chr1	228589854	228589913	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.73972	5.85504	K562	SF3B4
chr1	228594060	228594151	-	CDS,intron-Distal	3.13848	4.69671	HepG2	PPIG
chr1	228582723	228582776	-	CDS,intron-Distal	3.87130	3.84914	K562	SLTM
chr1	228582901	228582965	-	CDS,intron-Distal,intron-Proximal	3.47893	4.13746	HepG2	PPIG
chr1	228589763	228589832	-	CDS,intron-Distal,intron-Proximal	3.62712	4.41267	HepG2	PPIG
chr1	228588756	228588843	-	CDS,intron-Distal	4.04804	7.40409	K562	BUD13
chr1	228582878	228583015	-	CDS,intron-Distal,intron-Proximal	4.47866	4.28193	HepG2	AQR
chr1	228588622	228588716	-	CDS,intron-Distal,intron-Proximal	3.94166	9.78963	HepG2	PRPF8
chr1	228593997	228594053	-	CDS,intron-Distal	3.39269	3.78791	K562	RBM15
chr1	228589722	228589807	-	CDS,intron-Distal,intron-Proximal	4.33227	4.59919	HepG2	AQR
chr1	228594096	228594168	-	CDS,intron-Distal	3.45225	5.13929	K562	RBM15
chr1	228588787	228588897	-	CDS,intron-Distal,intron-Proximal	3.51593	7.64107	HepG2	PPIG
chr1	228589834	228589893	-	CDS,intron-Distal,intron-Proximal	3.37669	4.17944	K562	BUD13
chr1	228589836	228589888	-	CDS,intron-Distal,intron-Proximal	4.22183	6.48405	K562	AQR
chr1	228589683	228589768	-	CDS,intron-Distal,intron-Proximal	6.52659	19.71511	K562	AQR
chr1	228589715	228589778	-	CDS,intron-Distal,intron-Proximal	3.48755	4.54206	HepG2	PRPF8
chr1	228582599	228582646	-	CDS,intron-Distal	3.31918	3.93112	K562	RBM15
chr1	228588614	228588671	-	CDS,intron-Distal,intron-Proximal	4.86617	6.08021	K562	PRPF8
chr1	228593875	228593940	-	CDS,intron-Distal,intron-Proximal	5.70075	13.65176	K562	RBM15
chr1	228582896	228582974	-	CDS,intron-Distal,intron-Proximal	3.71730	8.57308	HepG2	BUD13
chr1	228589766	228589839	-	CDS,intron-Distal,intron-Proximal	4.09421	3.16390	K562	SRSF1
chr1	228582786	228582839	-	CDS,intron-Distal,intron-Proximal	3.19999	3.20367	K562	RBM15
chr1	228593940	228593961	-	CDS,intron-Distal,intron-Proximal	4.37127	9.80044	K562	RBM15
chr1	228593961	228593997	-	CDS,intron-Distal,intron-Proximal	3.89159	4.80676	K562	RBM15
chr1	228593723	228593786	-	intron-Distal	6.05314	10.20211	HepG2	EFTUD2
chr1	228588472	228588554	-	intron-Distal,intron-Proximal	3.97838	3.87294	K562	TARDBP
chr1	228593696	228593787	-	intron-Distal,intron-Proximal	4.39057	4.32014	K562	XRN2
chr1	228593667	228593776	-	intron-Distal,intron-Proximal	3.60040	5.16186	K562	NONO
chr1	228593712	228593785	-	intron-Distal	5.61590	10.32927	K562	GTF2F1
chr1	228588619	228588656	-	intron-Distal,intron-Proximal	6.41944	15.90046	K562	AQR
chr1	228589049	228589167	-	intron-Distal	4.02618	9.49916	K562	GTF2F1
chr1	228593732	228593808	-	intron-Distal	3.68483	7.16774	K562	AQR
chr1	228588479	228588587	-	intron-Distal,intron-Proximal	4.13958	6.37709	K562	EFTUD2
chr1	228583121	228583149	-	intron-Distal,intron-Proximal	4.14169	3.54010	K562	UPF1
chr1	228588923	228588974	-	intron-Distal,intron-Proximal	4.43409	4.84986	K562	GTF2F1
chr1	228588918	228589001	-	intron-Distal,intron-Proximal	4.43659	10.81562	K562	AQR
chr1	228585194	228585250	-	intron-Distal	4.33648	4.70425	K562	SMNDC1
chr1	228593655	228593792	-	intron-Distal,intron-Proximal	3.49973	8.03773	K562	PRPF8
chr1	228593731	228593777	-	intron-Distal	3.13961	3.50009	K562	CSTF2T
chr1	228584871	228584925	-	intron-Distal,intron-Proximal	3.84136	7.17119	K562	SF3B4
chr1	228593738	228593784	-	intron-Distal	3.76338	3.03048	HepG2	GTF2F1
chr1	228585200	228585254	-	intron-Distal	4.26550	4.11693	K562	BUD13
chr1	228586389	228586464	-	intron-Distal	4.04574	4.12666	HepG2	HNRNPK
chr1	228588660	228588665	-	intron-Distal,intron-Proximal	5.26633	12.70303	K562	AQR
chr1	228589273	228589381	-	intron-Distal	3.32340	7.99400	K562	GTF2F1
chr1	228588468	228588576	-	intron-Distal,intron-Proximal	3.43624	3.48391	K562	SMNDC1
chr1	228589674	228589750	-	intron-Distal,intron-Proximal	4.58961	3.69238	K562	GTF2F1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for TRIM11 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TRIM11 is not available on ENCORE database.
52 RBPs can affect the levels of TRIM11.

The Knockdown/knockout RNA-Seq assay for TRIM11 is not available on ENCORE database.

52 RBPs can affect the gene expression of TRIM11 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TRIM11	ENSG00000154370.9	521.16040	400.61660	0.37940	2.99540	2.36700	HepG2	ACO1
TRIM11	ENSG00000154370.9	522.64580	333.75630	0.64690	2.18380	1.35410	HepG2	BCCIP
TRIM11	ENSG00000154370.9	423.53130	287.60670	0.55830	3.41320	2.75560	HepG2	BOP1
TRIM11	ENSG00000154370.9	491.71080	400.56500	0.29570	1.98240	1.40770	HepG2	CKAP4
TRIM11	ENSG00000154370.9	553.19490	412.47450	0.42340	2.11580	1.56890	HepG2	DDX6
TRIM11	ENSG00000154370.9	256.54290	353.07410	-0.46080	2.34590	1.61870	HepG2	FUBP3
TRIM11	ENSG00000154370.9	483.69940	299.26400	0.69260	4.41240	3.61620	HepG2	GPKOW
TRIM11	ENSG00000154370.9	552.09960	415.35060	0.41050	2.28820	1.64960	HepG2	HNRNPK
TRIM11	ENSG00000154370.9	395.99020	285.59600	0.47140	2.28190	1.70440	HepG2	HNRNPLL
TRIM11	ENSG00000154370.9	402.65660	309.35680	0.38020	2.46720	1.89330	HepG2	HNRNPU
TRIM11	ENSG00000154370.9	677.73010	416.83360	0.70110	5.77190	4.83140	HepG2	IGF2BP2
TRIM11	ENSG00000154370.9	633.52660	446.68940	0.50400	2.77230	1.94070	HepG2	LARP4
TRIM11	ENSG00000154370.9	598.19740	442.27580	0.43560	2.48800	1.86550	HepG2	MAGOH
TRIM11	ENSG00000154370.9	516.53260	302.69350	0.77090	4.02920	2.94490	HepG2	PABPC1
TRIM11	ENSG00000154370.9	587.58920	416.03620	0.49800	4.68200	3.92700	HepG2	PCBP1
TRIM11	ENSG00000154370.9	533.87530	423.32640	0.33460	2.26850	1.76360	HepG2	PTBP1
TRIM11	ENSG00000154370.9	678.99200	472.75360	0.52220	5.01240	4.12400	HepG2	PUM2
TRIM11	ENSG00000154370.9	541.62300	408.05920	0.40840	3.46330	2.79200	HepG2	PUS1
TRIM11	ENSG00000154370.9	847.03990	567.17960	0.57850	6.67540	5.95440	HepG2	RBM22
TRIM11	ENSG00000154370.9	318.48840	235.47280	0.43560	2.05390	1.51730	HepG2	RPS19
TRIM11	ENSG00000154370.9	911.53440	580.92670	0.64980	4.05560	3.23170	HepG2	SF3A3
TRIM11	ENSG00000154370.9	396.96910	282.66540	0.48980	2.65050	1.96050	HepG2	SF3B1
TRIM11	ENSG00000154370.9	695.21260	440.74830	0.65740	7.82730	6.91370	HepG2	SF3B4
TRIM11	ENSG00000154370.9	414.37040	321.26410	0.36710	2.44720	1.83710	HepG2	SMN1
TRIM11	ENSG00000154370.9	931.95080	640.58540	0.54080	7.26400	6.55810	HepG2	SRFBP1
TRIM11	ENSG00000154370.9	606.63560	500.43920	0.27750	2.23880	1.66830	HepG2	SUCLG1
TRIM11	ENSG00000154370.9	519.99490	300.57410	0.79070	8.41230	7.62570	HepG2	TIAL1
TRIM11	ENSG00000154370.9	398.29740	303.28660	0.39310	2.60730	2.05640	HepG2	TRIM56
TRIM11	ENSG00000154370.9	860.74950	459.78730	0.90450	10.45670	9.21580	HepG2	U2AF1
TRIM11	ENSG00000154370.9	501.82790	212.08250	1.24250	3.89110	2.70950	HepG2	U2AF2
TRIM11	ENSG00000154370.9	352.43880	239.91350	0.55480	2.63390	1.37600	HepG2	ZRANB2
TRIM11	ENSG00000154370.9	1742.55740	1495.19790	0.22080	1.98060	1.48480	K562	AGGF1
TRIM11	ENSG00000154370.9	2022.78440	1555.83400	0.37860	3.76700	3.00260	K562	AKAP8L
TRIM11	ENSG00000154370.9	4577.22510	1592.98100	1.52260	49.72650	47.52650	K562	AQR
TRIM11	ENSG00000154370.9	1213.30580	780.57610	0.63620	6.49190	5.04630	K562	EFTUD2
TRIM11	ENSG00000154370.9	533.63150	841.45530	-0.65700	5.69320	3.96410	K562	FKBP4
TRIM11	ENSG00000154370.9	1270.03440	962.67800	0.39960	4.92180	4.14710	K562	FXR1
TRIM11	ENSG00000154370.9	272.34590	493.41480	-0.85740	3.84900	2.98380	K562	G3BP2
TRIM11	ENSG00000154370.9	1172.01910	790.95490	0.56720	4.35510	2.94900	K562	IGF2BP2
TRIM11	ENSG00000154370.9	2326.79600	1849.63710	0.33100	3.57990	2.52580	K562	MBNL1
TRIM11	ENSG00000154370.9	1253.27140	1529.97890	-0.28780	3.42060	2.52590	K562	MTPAP
TRIM11	ENSG00000154370.9	1306.67220	1724.16640	-0.40000	2.98950	2.12540	K562	PCBP3
TRIM11	ENSG00000154370.9	1079.09700	1322.49640	-0.29340	2.34310	1.60640	K562	POLR2G
TRIM11	ENSG00000154370.9	1177.15200	759.59490	0.63190	6.20670	5.08250	K562	PRPF8
TRIM11	ENSG00000154370.9	1174.32450	869.32820	0.43380	3.96150	2.85160	K562	PSIP1
TRIM11	ENSG00000154370.9	1057.39040	807.08860	0.38960	2.58160	1.93660	K562	PTBP1
TRIM11	ENSG00000154370.9	1837.99410	1542.86880	0.25240	1.82240	1.36320	K562	PUS1
TRIM11	ENSG00000154370.9	1865.21790	1503.36910	0.31100	3.56070	2.90170	K562	RBM15
TRIM11	ENSG00000154370.9	1299.15460	773.57570	0.74790	7.48840	6.01740	K562	RBM22
TRIM11	ENSG00000154370.9	985.01690	793.01930	0.31270	2.41300	1.49130	K562	RCC2
TRIM11	ENSG00000154370.9	1720.40620	1006.96020	0.77260	3.57730	2.15220	K562	SF1
TRIM11	ENSG00000154370.9	964.93060	664.66800	0.53770	3.95030	2.77710	K562	SF3B1
TRIM11	ENSG00000154370.9	1360.02710	512.53110	1.40780	21.83010	19.23400	K562	SF3B4
TRIM11	ENSG00000154370.9	1060.40820	1326.49560	-0.32300	2.95760	2.10580	K562	SYNCRIP
TRIM11	ENSG00000154370.9	1335.45080	800.68560	0.73790	9.22250	7.82730	K562	TARDBP
TRIM11	ENSG00000154370.9	1049.29200	772.38960	0.44190	4.07910	3.05800	K562	TIA1
TRIM11	ENSG00000154370.9	965.92650	758.28550	0.34910	2.36500	1.37160	K562	TRA2A
TRIM11	ENSG00000154370.9	763.98980	477.67930	0.67740	5.19180	3.59550	K562	U2AF1
TRIM11	ENSG00000154370.9	843.44450	493.53510	0.77300	4.06220	3.09000	K562	U2AF2
TRIM11	ENSG00000154370.9	1563.51150	1802.44050	-0.20520	2.09500	1.46380	K562	UPF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TRIM11 is not available on ENCORE database.

1 RBPs can affect the splicing of TRIM11 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	TRIM11	ENSG00000154370.9	chr1	-	228588664	228588895			228584843	228584866	228589766	228593605	-0.27400	0.00004	0.00314	excluded	K562	FXR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TRIM11

General Information

Functions

Localization

Domains (AlphaFold: TRIM11)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TRIM11 is not avaliable on ENCORE database.

20 proteins are bound to TRIM11 RNA:

eCLIP assay for TRIM11 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TRIM11 is not available on ENCORE database.

52 RBPs can affect the gene expression of TRIM11 :

The Knockdown/knockout RNA-Seq assay for TRIM11 is not available on ENCORE database.

1 RBPs can affect the splicing of TRIM11 :

The Knockdown/knockout RNA-Seq assay for TRIM11 is not avaliable on ENCORE database.