TRAFD1

General Information

Gene Name       : TRAFD1
Gene ID             : ENSG00000135148.11
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TRAFD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRAFD1ENSG00000135148.1143.6137.2440.42ENCSR000AEF
HepG2TRAFD1ENSG00000135148.1113.8217.7415.78ENCSR985KAT
K562TRAFD1ENSG00000135148.1136.6244.1040.36ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRAFD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRAFD1 RNA is bound by 18 proteins.  







eCLIP assay for TRAFD1 is not avaliable on ENCORE database.





18 proteins are bound to TRAFD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12112591124112591154+3'-UTR4.601206.88705HepG2SUB1
chr12112590963112591046+3'-UTR4.437836.86851K562FAM120A
chr12112586105112586131+3'-UTR,CDS,intron-Proximal3.784594.00320K562AQR
chr12112591119112591203+3'-UTR3.1585313.37914K562UPF1
chr12112590771112590826+3'-UTR3.2302710.21646K562TIA1
chr12112590762112590825+3'-UTR4.7792414.20337K562DDX6
chr12112590843112590927+3'-UTR3.914867.04160K562FAM120A
chr12112590716112590772+3'-UTR5.794449.21129HepG2SUB1
chr12112591203112591288+3'-UTR3.628789.82186K562UPF1
chr12112578638112578767+3'-UTR,CDS4.414475.29377K562GRWD1
chr12112590715112590771+3'-UTR3.4865612.01001K562TIA1
chr12112590730112590836+3'-UTR4.714218.50867K562PABPC4
chr12112579023112579073+3'-UTR,CDS,intron-Distal,intron-Proximal4.577074.13847K562AQR
chr12112590739112590846+3'-UTR4.621445.41597HepG2UPF1
chr12112590984112591045+3'-UTR3.8421310.02205K562UPF1
chr12112580018112580084+3'-UTR,CDS4.700365.08593K562FXR2
chr12112590868112590937+3'-UTR4.0453711.88509K562UPF1
chr12112590755112590829+3'-UTR4.306864.39312K562APOBEC3C
chr12112591154112591184+3'-UTR5.573987.71888HepG2SUB1
chr12112590751112590859+3'-UTR3.361314.51400K562ZC3H11A
chr12112572547112572664+3'-UTR,CDS3.863926.19204K562YBX3
chr12112591222112591300+3'-UTR5.070264.22122K562DDX55
chr12112590724112590840+3'-UTR5.2321634.04576K562UPF1
chr12112590703112590825+3'-UTR3.025913.24667K562FUS
chr12112590726112590829+3'-UTR4.325423.43895HepG2LARP4
chr12112587567112587637+3'-UTR,CDS3.792645.37099K562FXR2
chr12112563392112563408+5'-UTR4.487335.20509K562YBX3
chr12112568312112568369+5'-UTR,CDS,intron-Proximal3.109955.21590K562DDX3X
chr12112563399112563434+5'-UTR,intron-Proximal4.417314.66602K562DDX3X
chr12112589904112589979+CDS,intron-Proximal4.398594.15208K562RBM15
chr12112590217112590286+CDS,intron-Proximal4.3533410.54823K562AQR
chr12112589921112589986+CDS,intron-Proximal3.407393.99908K562BUD13
chr12112589943112589987+CDS,intron-Proximal4.7417719.71370K562AQR
chr12112587674112587725+CDS,intron-Proximal5.077076.44303K562AQR
chr12112589987112590029+intron-Proximal4.053548.65427K562AQR
chr12112586131112586152+intron-Proximal3.743364.00320K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRAFD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRAFD1 is not available on ENCORE database.

  • 59 RBPs can affect the levels of TRAFD1.  








The Knockdown/knockout RNA-Seq assay for TRAFD1 is not available on ENCORE database.





59 RBPs can affect the gene expression of TRAFD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRAFD1ENSG00000135148.7255.20180422.84500-0.728505.336404.01580HepG2ADAR
TRAFD1ENSG00000135148.7976.81410709.236000.461702.816002.27990HepG2AKAP1
TRAFD1ENSG00000135148.7817.73450586.817000.478603.307402.44830HepG2ASCC1
TRAFD1ENSG00000135148.7884.45500721.661300.293402.640401.96850HepG2AUH
TRAFD1ENSG00000135148.7570.12000414.278400.460603.031802.40820HepG2BOP1
TRAFD1ENSG00000135148.7910.62630557.521800.707706.919305.73340HepG2CIRBP
TRAFD1ENSG00000135148.7609.81480419.400100.539906.570005.36920HepG2DDX19B
TRAFD1ENSG00000135148.7230.08620434.22120-0.916309.297307.37320HepG2DDX1
TRAFD1ENSG00000135148.7670.92200396.358300.759207.675806.60280HepG2DDX21
TRAFD1ENSG00000135148.7550.64110387.874000.505403.708102.63960HepG2DDX24
TRAFD1ENSG00000135148.71018.53480679.359500.584104.834304.02600HepG2DDX3X
TRAFD1ENSG00000135148.7405.06920583.66620-0.527003.015702.37330HepG2DDX6
TRAFD1ENSG00000135148.7655.58590433.867000.595405.748804.83680HepG2DKC1
TRAFD1ENSG00000135148.7870.72380619.943400.490003.178002.49350HepG2EIF4A3
TRAFD1ENSG00000135148.7637.53440463.059500.461202.737801.65150HepG2ESF1
TRAFD1ENSG00000135148.7594.45360429.852500.467603.064102.38770HepG2HNRNPA1
TRAFD1ENSG00000135148.7444.92440596.38190-0.422703.274502.26810HepG2HNRNPA2B1
TRAFD1ENSG00000135148.7421.82650587.74100-0.478503.042902.31190HepG2HNRNPK
TRAFD1ENSG00000135148.7458.87250591.05610-0.365202.980602.28360HepG2HNRNPL
TRAFD1ENSG00000135148.7530.41610411.450500.366301.841901.31840HepG2HNRNPLL
TRAFD1ENSG00000135148.7656.94210517.227300.344902.558701.86240HepG2IGF2BP1
TRAFD1ENSG00000135148.7879.58780589.827800.576404.725903.86400HepG2IGF2BP2
TRAFD1ENSG00000135148.7378.10500485.17300-0.359702.941102.18790HepG2ILF2
TRAFD1ENSG00000135148.7652.46540415.906900.649504.094102.56300HepG2KRR1
TRAFD1ENSG00000135148.7875.60120625.835300.484403.369702.64520HepG2MAGOH
TRAFD1ENSG00000135148.7582.18940436.771100.414502.409601.65240HepG2MSI2
TRAFD1ENSG00000135148.7527.48190652.06820-0.305902.434801.87160HepG2PUM1
TRAFD1ENSG00000135148.7857.71770461.917100.8928017.8423016.52220HepG2PUS1
TRAFD1ENSG00000135148.7898.35730692.522800.375303.506302.94220HepG2RBM22
TRAFD1ENSG00000135148.7632.60050419.705800.591803.162602.15620HepG2RPS10
TRAFD1ENSG00000135148.7250.88170356.87840-0.508402.154201.45230HepG2RRP9
TRAFD1ENSG00000135148.7551.99550407.260000.438602.690101.99380HepG2SF3B1
TRAFD1ENSG00000135148.7899.72870639.928200.491505.536704.92580HepG2SRSF1
TRAFD1ENSG00000135148.7468.34410606.50340-0.372902.812102.18120HepG2SRSF5
TRAFD1ENSG00000135148.7386.08450520.58990-0.431203.769703.14740HepG2SRSF9
TRAFD1ENSG00000135148.7917.71190679.121500.434305.284304.62010HepG2SSB
TRAFD1ENSG00000135148.7257.50030399.27120-0.632802.747301.54930HepG2SUB1
TRAFD1ENSG00000135148.7300.93060465.50990-0.629403.322502.58920HepG2SUPV3L1
TRAFD1ENSG00000135148.7631.24780461.497900.451803.708503.14740HepG2TIAL1
TRAFD1ENSG00000135148.7352.34270465.65790-0.402302.896702.32290HepG2TRIM56
TRAFD1ENSG00000135148.7821.68210461.728900.831408.389907.29520HepG2U2AF1
TRAFD1ENSG00000135148.7192.97680275.00010-0.511002.228901.54770HepG2UCHL5
TRAFD1ENSG00000135148.7569.97250471.364300.273901.928301.35260HepG2ZC3H8
TRAFD1ENSG00000135148.72486.678101921.376300.372006.631105.80750K562AGGF1
TRAFD1ENSG00000135148.72545.526202111.362300.269702.287701.40650K562AKAP8
TRAFD1ENSG00000135148.72630.451701999.293900.395704.294503.47610K562AKAP8L
TRAFD1ENSG00000135148.72716.932502097.768600.373005.598404.24610K562ATP5C1
TRAFD1ENSG00000135148.71825.695301493.000000.290102.684701.65790K562DDX3X
TRAFD1ENSG00000135148.72599.152902151.290500.272703.468302.47180K562DKC1
TRAFD1ENSG00000135148.72730.698303344.96370-0.292704.439503.26100K562EIF4G2
TRAFD1ENSG00000135148.71857.145501445.380800.361502.972202.08420K562FMR1
TRAFD1ENSG00000135148.71249.765501529.20950-0.291102.255901.70930K562HNRNPC
TRAFD1ENSG00000135148.72818.976802121.698600.409905.113803.92340K562KIF1C
TRAFD1ENSG00000135148.71546.642001978.17370-0.355003.496902.54610K562MAGOH
TRAFD1ENSG00000135148.72515.604602031.029800.308602.743301.67320K562MAK16
TRAFD1ENSG00000135148.72999.758502376.845600.335703.310402.29890K562MBNL1
TRAFD1ENSG00000135148.72323.303202042.533700.185702.729301.98700K562NSUN2
TRAFD1ENSG00000135148.72704.304901736.462100.639003.021101.97730K562PABPN1
TRAFD1ENSG00000135148.73174.598403882.32950-0.290303.672302.43080K562PUM1
TRAFD1ENSG00000135148.73330.738001982.645100.7483012.6252011.51100K562PUS1
TRAFD1ENSG00000135148.72860.332501931.876700.5661011.4758010.28250K562RBM15
TRAFD1ENSG00000135148.72331.970502015.610200.210202.209201.47370K562SF3A3
TRAFD1ENSG00000135148.72132.561401798.016400.246102.555001.43310K562SRSF7
TRAFD1ENSG00000135148.7800.350901246.54560-0.639205.872904.35240K562SUPV3L1
TRAFD1ENSG00000135148.72541.528902165.749800.230703.087602.33040K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRAFD1 is not available on ENCORE database.





6 RBPs can affect the splicing of TRAFD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETRAFD1ENSG00000135148.7chr12+112568273112568373112563348112563422112572541112572677-0.066000.005070.07489excludedK562SF3B4
SETRAFD1ENSG00000135148.7chr12+1125638881125639531125633661125634221125683141125683730.170000.000000.00000includedK562AQR
SETRAFD1ENSG00000135148.7chr12+112568314112568373112563357112563422112572541112572677-0.054000.000800.01416excludedK562PUS1
SETRAFD1ENSG00000135148.7chr12+112568314112568373112563357112563422112572541112572677-0.057000.001140.03776excludedK562UTP18
SETRAFD1ENSG00000135148.7chr12+1125638881125639531125633661125634221125683141125683730.133000.000000.00000includedK562HNRNPU
SETRAFD1ENSG00000135148.7chr12+1125638881125639531125633661125634221125683141125683730.122000.001350.02470includedK562HNRNPC
MXETRAFD1ENSG00000135148.7chr12+1125683141125683731125725411125726771125633481125639531125728161125728700.143000.000020.000241includedK562AQR
MXETRAFD1ENSG00000135148.7chr12+112568314112568373112572541112572677112563357112563422112572816112572870-0.160000.000010.000152includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TRAFD1 is not avaliable on ENCORE database.