TOX4

General Information

Gene Name       : TOX4
Gene ID             : ENSG00000092203.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TOX4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TOX4ENSG00000092203.1347.2540.6943.97ENCSR000AEF
HepG2TOX4ENSG00000092203.1393.67107.81100.74ENCSR985KAT
K562TOX4ENSG00000092203.1333.5541.4237.48ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TOX4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TOX4 RNA is bound by 16 proteins.  







eCLIP assay for TOX4 is not avaliable on ENCORE database.





16 proteins are bound to TOX4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr142196516221965232+3'-UTR4.302663.31330K562UPF1
chr142196488821964954+3'-UTR3.185093.10539K562U2AF2
chr142196045821960506+3'-UTR,CDS3.070784.39623HepG2PPIG
chr142195752021957566+3'-UTR,CDS,intron-Proximal3.287864.85828HepG2BCLAF1
chr142196489421964947+3'-UTR6.0328214.88833HepG2U2AF2
chr142195671921956768+3'-UTR,CDS,intron-Proximal5.2549812.02813K562SF3B4
chr142196339121963464+3'-UTR,CDS3.378377.36645HepG2PPIG
chr142196121921961289+3'-UTR,CDS4.676893.79199HepG2PPIG
chr142195572521955855+3'-UTR,CDS,intron-Proximal3.215895.41373HepG2PPIG
chr142196503721965162+3'-UTR4.422398.27548K562UPF1
chr142196135021961408+3'-UTR,CDS3.453163.64266HepG2PPIG
chr142195695921957009+3'-UTR,CDS3.335675.35144K562ZNF622
chr142196350121963658+3'-UTR,CDS,intron-Distal,intron-Proximal3.181285.07340HepG2CDC40
chr142196346421963540+3'-UTR,CDS3.266955.49938HepG2G3BP1
chr142196081621960869+3'-UTR,CDS3.441924.31813HepG2G3BP1
chr142195744321957493+3'-UTR,CDS3.706115.76104HepG2BCLAF1
chr142196338921963460+3'-UTR,CDS3.503064.71371HepG2GRWD1
chr142196093321960985+3'-UTR,CDS4.1071313.72330K562YBX3
chr142195732921957398+3'-UTR,CDS,intron-Proximal3.472706.76273HepG2G3BP1
chr142196089121960933+3'-UTR,CDS3.439337.65255K562YBX3
chr142196352821963585+3'-UTR,CDS,intron-Proximal4.7430311.09609HepG2PRPF8
chr142194538621945446+5'-UTR,CDS,intron-Distal,intron-Proximal3.477419.09120HepG2NCBP2
chr142194539321945445+5'-UTR,CDS,intron-Distal,intron-Proximal4.262926.08299HepG2PPIG
chr142194540321945538+5'-UTR,CDS,intron-Distal,intron-Proximal3.487555.73990HepG2PRPF8
chr142194537821945458+5'-UTR,CDS,intron-Distal,intron-Proximal3.446094.84286HepG2PRPF4
chr142194565321945667+CDS,intron-Distal,intron-Proximal5.084686.46301HepG2PPIG
chr142194565421945684+CDS,intron-Distal,intron-Proximal3.810054.93978HepG2BCLAF1
chr142194564921945691+CDS,intron-Distal,intron-Proximal3.265503.39477K562BUD13
chr142194566721945728+CDS,intron-Distal,intron-Proximal3.7533510.22649HepG2PPIG
chr142194568421945727+CDS,intron-Distal,intron-Proximal3.215074.23325HepG2BCLAF1
chr142194564921945723+CDS,intron-Distal,intron-Proximal3.712563.10693HepG2UCHL5
chr142194576021945852+intron-Distal,intron-Proximal4.310676.87873HepG2EFTUD2
chr142194576421945852+intron-Distal,intron-Proximal3.184003.46130HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TOX4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TOX4 is not available on ENCORE database.

  • 49 RBPs can affect the levels of TOX4.  








The Knockdown/knockout RNA-Seq assay for TOX4 is not available on ENCORE database.





49 RBPs can affect the gene expression of TOX4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TOX4ENSG00000092203.92134.796702516.76920-0.237503.339802.68170HepG2ACO1
TOX4ENSG00000092203.92959.823403893.19050-0.395402.897302.35370HepG2AKAP1
TOX4ENSG00000092203.93716.787303060.461000.280202.059301.38520HepG2CIRBP
TOX4ENSG00000092203.92855.062802181.484800.388104.033303.22810HepG2DDX21
TOX4ENSG00000092203.92372.383903868.62350-0.705504.440803.21280HepG2DDX59
TOX4ENSG00000092203.92414.161403185.51000-0.400003.141302.43430HepG2G3BP1
TOX4ENSG00000092203.92283.265503225.39650-0.498405.826604.84150HepG2HNRNPK
TOX4ENSG00000092203.92793.175103162.75090-0.179302.609701.95490HepG2HNRNPL
TOX4ENSG00000092203.92317.124902617.72000-0.176001.962701.44250HepG2HNRNPU
TOX4ENSG00000092203.92553.700703454.32020-0.435803.531102.82670HepG2MATR3
TOX4ENSG00000092203.92813.646203296.20340-0.228403.063102.42970HepG2PCBP1
TOX4ENSG00000092203.92638.649703488.81250-0.4029011.0871010.06630HepG2PUM1
TOX4ENSG00000092203.92639.586103486.25590-0.401405.726304.77280HepG2PUM2
TOX4ENSG00000092203.93153.970902563.460100.299005.375404.56790HepG2PUS1
TOX4ENSG00000092203.94638.906903682.232100.333103.612102.64640HepG2RBM15
TOX4ENSG00000092203.92044.062302579.33720-0.335602.649801.67890HepG2RBM27
TOX4ENSG00000092203.92363.313303732.70640-0.6594020.2178019.01480HepG2NELFE
TOX4ENSG00000092203.92527.572203476.58940-0.4599010.570809.48540HepG2RECQL
TOX4ENSG00000092203.95659.570203623.549300.643206.837405.83300HepG2RPLP0
TOX4ENSG00000092203.92455.150201804.097300.444405.386104.56140HepG2RPS19
TOX4ENSG00000092203.92642.952501408.982700.907402.753901.40670HepG2SF1
TOX4ENSG00000092203.92887.561303491.91730-0.274204.226103.51990HepG2SF3B4
TOX4ENSG00000092203.92750.858501258.303601.128304.433302.69490HepG2SNRNP200
TOX4ENSG00000092203.95425.167004059.184900.418402.407801.68110HepG2SNRNP70
TOX4ENSG00000092203.94436.849903644.844800.283605.303704.70270HepG2SRSF1
TOX4ENSG00000092203.94068.129403341.034700.284005.045304.39320HepG2SSB
TOX4ENSG00000092203.93143.242103690.43170-0.231503.943403.22430HepG2SUCLG1
TOX4ENSG00000092203.92790.342502267.707100.299101.989001.40170HepG2SUPV3L1
TOX4ENSG00000092203.92503.183403276.23730-0.388306.286005.49940HepG2TAF15
TOX4ENSG00000092203.92029.601502566.35220-0.338505.654604.90140HepG2TRIM56
TOX4ENSG00000092203.94079.208603333.441300.291202.215301.64700HepG2U2AF1
TOX4ENSG00000092203.93010.117901464.910401.038903.587902.46100HepG2U2AF2
TOX4ENSG00000092203.93221.667802874.675700.164301.878001.36400HepG2UTP3
TOX4ENSG00000092203.93809.740803274.698000.218203.984203.36020HepG2ZNF622
TOX4ENSG00000092203.93169.192801694.217500.9034017.5065016.19490K562AQR
TOX4ENSG00000092203.92252.822701964.103100.197802.053101.47780K562DDX47
TOX4ENSG00000092203.91213.86840870.012200.480402.318301.40610K562EIF3A
TOX4ENSG00000092203.91661.274401097.043400.598608.131007.15740K562HNRNPC
TOX4ENSG00000092203.91648.591501399.620600.236102.112801.33430K562HNRNPU
TOX4ENSG00000092203.91481.024201112.891200.412203.339701.69440K562LIN28B
TOX4ENSG00000092203.9892.096601220.62510-0.452304.472903.39760K562MAGOH
TOX4ENSG00000092203.91811.804101599.927500.179302.091901.43300K562NSUN2
TOX4ENSG00000092203.92852.246202049.234700.476904.434503.38230K562PCBP3
TOX4ENSG00000092203.92122.613801571.815400.433305.463704.33890K562POLR2G
TOX4ENSG00000092203.91275.68590897.600200.507005.886504.43370K562RCC2
TOX4ENSG00000092203.91358.10170954.321300.508904.104303.10690K562RPS19
TOX4ENSG00000092203.91710.617801400.580500.288402.317101.33210K562SAFB
TOX4ENSG00000092203.91882.245501578.664200.253702.583201.79460K562SF3A3
TOX4ENSG00000092203.91325.36060946.084300.486204.016502.87470K562TIAL1
TOX4ENSG00000092203.91178.55720948.044600.313902.633301.84880K562U2AF2
TOX4ENSG00000092203.91995.814101451.589900.459205.617504.35020K562WDR3
TOX4ENSG00000092203.91808.276101509.451700.260503.377802.45200K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TOX4 is not available on ENCORE database.





10 RBPs can affect the splicing of TOX4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETOX4ENSG00000092203.9chr14+219604542196053521957331219575622196066621961416-0.095000.002150.03868excludedK562SF3B4
SETOX4ENSG00000092203.9chr14+219604542196053521957331219575622196066621961416-0.128000.000000.00000excludedK562AQR
SETOX4ENSG00000092203.9chr14+219604402196053521957331219575622196066621960765-0.063000.000230.05332excludedK562GPKOW
SETOX4ENSG00000092203.9chr14+219604542196053521957331219575622196066621961416-0.086000.000000.00004excludedK562SF3B1
A3SSTOX4ENSG00000092203.9chr14+2195673021956948219567482195694821955609219558520.100000.000010.00010longerK562AQR
A5SSTOX4ENSG00000092203.9chr14+2195560921955852219556092195576121956748219570090.095000.002800.08285longerHepG2U2AF2
RITOX4ENSG00000092203.9chr14+2195560921957009219556092195576121956748219570090.163000.001610.01348includedHepG2U2AF2
RITOX4ENSG00000092203.9chr14+2195560921957009219556092195585221956748219570090.077000.000030.00154includedHepG2UCHL5
RITOX4ENSG00000092203.9chr14+219556092195700921955609219558522195674821957009-0.082000.001460.03268excludedK562SRSF1
RITOX4ENSG00000092203.9chr14+2195560921957009219556092195585221956748219570090.082000.000810.05620includedK562PHF6
RITOX4ENSG00000092203.9chr14+2195560921957009219556092195585221956748219570090.066000.000050.00183includedHepG2G3BP1
RITOX4ENSG00000092203.9chr14+2195560921957009219556092195585221956748219570090.111000.000020.00022includedK562AQR
RITOX4ENSG00000092203.9chr14+219556092195700921955609219558522195674821957009-0.078000.001180.02085excludedK562FXR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TOX4 is not avaliable on ENCORE database.