TOM1L1

General Information

Gene Name : TOM1L1
Gene ID : ENSG00000141198.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TOM1L1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TOM1L1	ENSG00000141198.15	2.87	1.74	2.31	ENCSR000AEF
HepG2	TOM1L1	ENSG00000141198.15	28.48	40.95	34.72	ENCSR985KAT
K562	TOM1L1	ENSG00000141198.15	28.90	30.32	29.61	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TOM1L1 is not avaliable on ENCORE database.

Proteins bound to RNA

TOM1L1 RNA is bound by 13 proteins.

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eCLIP assay for TOM1L1 is not avaliable on ENCORE database.

13 proteins are bound to TOM1L1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	53014468	53014625	+	3'-UTR,CDS,intron-Proximal	4.03440	8.70622	HepG2	GRWD1
chr17	52988677	52988796	+	intron-Distal	3.85134	8.60624	HepG2	SUGP2
chr17	52985426	52985520	+	intron-Distal	5.15924	8.39510	HepG2	SUGP2
chr17	53014474	53014582	+	3'-UTR,CDS	3.06008	8.30744	HepG2	BCLAF1
chr17	53014492	53014559	+	3'-UTR,CDS	3.34073	8.20394	K562	YBX3
chr17	53007431	53007556	+	3'-UTR,5'-UTR,CDS,intron-Proximal	3.82310	7.98982	HepG2	PPIG
chr17	52993116	52993226	+	3'-UTR,5'-UTR,CDS,intron-Proximal	3.55410	7.58656	HepG2	BCLAF1
chr17	52988677	52988781	+	intron-Distal	4.04292	6.98272	HepG2	MATR3
chr17	52993140	52993223	+	3'-UTR,5'-UTR,CDS	3.59193	6.70085	HepG2	PPIG
chr17	52978247	52978337	+	5'-UTR,CDS,intron-Proximal	3.02685	6.15266	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 29 entries

eCLIP assay for TOM1L1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TOM1L1 is not available on ENCORE database.
73 RBPs can affect the levels of TOM1L1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TOM1L1 is not available on ENCORE database.

73 RBPs can affect the gene expression of TOM1L1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TOM1L1	ENSG00000141198.9	335.54450	1063.46620	-1.66420	35.29810	33.47630	HepG2	QKI
TOM1L1	ENSG00000141198.9	1160.47250	680.84230	0.76920	18.00160	16.62830	HepG2	CKAP4
TOM1L1	ENSG00000141198.9	703.11110	1179.08900	-0.74580	16.66610	15.11120	HepG2	DAZAP1
TOM1L1	ENSG00000141198.9	1533.47260	958.97720	0.67710	12.31580	11.26190	HepG2	TAF15
TOM1L1	ENSG00000141198.9	1300.15660	754.59440	0.78480	11.00960	9.76060	HepG2	DDX21
TOM1L1	ENSG00000141198.9	708.22630	1074.03460	-0.60080	10.78430	9.53040	HepG2	HNRNPL
TOM1L1	ENSG00000141198.9	1067.66000	586.71560	0.86360	10.44500	9.00580	HepG2	PRPF8
TOM1L1	ENSG00000141198.9	726.52290	1102.03250	-0.60110	9.53860	8.47090	HepG2	SRSF5
TOM1L1	ENSG00000141198.9	1545.69880	1067.03260	0.53460	8.68240	7.95060	HepG2	SRSF1
TOM1L1	ENSG00000141198.9	331.74560	579.77710	-0.80540	10.09150	7.76600	K562	EIF4B
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 82 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TOM1L1 is not available on ENCORE database.

14 RBPs can affect the splicing of TOM1L1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TOM1L1	ENSG00000141198.9	chr17	+	52981068	52981153			52978112	52978284	52990026	52990176	-0.19000	0.00000	0.00006	excluded	HepG2	SF3A3
SE	TOM1L1	ENSG00000141198.9	chr17	+	52982849	52982928			52978166	52978284	52990026	52990176	-0.32100	0.00003	0.00299	excluded	K562	HNRNPK
SE	TOM1L1	ENSG00000141198.9	chr17	+	52981068	52981153			52978211	52978284	52990026	52990176	0.16400	0.00005	0.00692	included	HepG2	IGF2BP3
SE	TOM1L1	ENSG00000141198.9	chr17	+	52981068	52981153			52978211	52978284	52982849	52982928	-0.18200	0.00038	0.01282	excluded	K562	AGGF1
SE	TOM1L1	ENSG00000141198.9	chr17	+	52981068	52981153			52978211	52978284	52990026	52990176	0.12200	0.00060	0.04014	included	HepG2	AKAP1
SE	TOM1L1	ENSG00000141198.9	chr17	+	52981068	52981153			52978211	52978284	52990026	52990176	0.12600	0.00096	0.05489	included	HepG2	NCBP2
SE	TOM1L1	ENSG00000141198.9	chr17	+	52982849	52982928			52978166	52978284	52990026	52990176	0.34000	0.00150	0.09722	included	K562	SUPV3L1
MXE	TOM1L1	ENSG00000141198.9	chr17	+	52982849	52982928	52990026	52990176	52981068	52981153	52991108	52991234	0.16600	0.00215	0.02658	1included	HepG2	SFPQ
SE	TOM1L1	ENSG00000141198.9	chr17	+	52981068	52981153			52978211	52978284	52990026	52990176	-0.26200	0.00247	0.07474	excluded	K562	TARDBP
MXE	TOM1L1	ENSG00000141198.9	chr17	+	52982849	52982928	52985199	52985420	52978166	52978284	52990026	52990176	-0.11600	0.00252	0.06022	2included	HepG2	MATR3

Showing 1 to 10 of 16 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TOM1L1

General Information

Functions

Localization

Domains (AlphaFold: TOM1L1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TOM1L1 is not avaliable on ENCORE database.

13 proteins are bound to TOM1L1 RNA:

eCLIP assay for TOM1L1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TOM1L1 is not available on ENCORE database.

73 RBPs can affect the gene expression of TOM1L1 :

The Knockdown/knockout RNA-Seq assay for TOM1L1 is not available on ENCORE database.

14 RBPs can affect the splicing of TOM1L1 :

The Knockdown/knockout RNA-Seq assay for TOM1L1 is not avaliable on ENCORE database.