TOM1L1

General Information

Gene Name       : TOM1L1
Gene ID             : ENSG00000141198.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TOM1L1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TOM1L1ENSG00000141198.152.871.742.31ENCSR000AEF
HepG2TOM1L1ENSG00000141198.1528.4840.9534.72ENCSR985KAT
K562TOM1L1ENSG00000141198.1528.9030.3229.61ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TOM1L1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TOM1L1 RNA is bound by 13 proteins.  







eCLIP assay for TOM1L1 is not avaliable on ENCORE database.





13 proteins are bound to TOM1L1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr175300753653007568+3'-UTR,5'-UTR,CDS,intron-Proximal4.533784.37348HepG2BCLAF1
chr175299314052993223+3'-UTR,5'-UTR,CDS3.591936.70085HepG2PPIG
chr175302742353027487+3'-UTR,CDS4.115894.30417K562YBX3
chr175299310652993228+3'-UTR,5'-UTR,CDS,intron-Proximal3.006533.89474HepG2GRWD1
chr175300743153007556+3'-UTR,5'-UTR,CDS,intron-Proximal3.823107.98982HepG2PPIG
chr175301447453014582+3'-UTR,CDS3.060088.30744HepG2BCLAF1
chr175303863753038764+3'-UTR3.161294.11795K562YBX3
chr175301446853014625+3'-UTR,CDS,intron-Proximal4.034408.70622HepG2GRWD1
chr175301983653019887+3'-UTR,intron-Distal,intron-Proximal3.452553.94088HepG2QKI
chr175301397653014051+3'-UTR,CDS,intron-Proximal3.610734.57435K562SF3B4
chr175300744253007579+3'-UTR,5'-UTR,CDS,intron-Proximal3.789335.30520K562UCHL5
chr175299311652993226+3'-UTR,5'-UTR,CDS,intron-Proximal3.554107.58656HepG2BCLAF1
chr175301449253014559+3'-UTR,CDS3.340738.20394K562YBX3
chr175298108352981158+5'-UTR,CDS,intron-Distal,intron-Proximal3.009303.40321HepG2GRWD1
chr175297824752978337+5'-UTR,CDS,intron-Proximal3.026856.15266HepG2PRPF8
chr175302024853020398+intron-Distal4.462405.62025K562KHSRP
chr175298918452989255+intron-Distal3.370803.35585HepG2QKI
chr175302224453022328+intron-Distal3.821565.30446HepG2SUGP2
chr175302528753025360+intron-Distal4.686355.75114HepG2PTBP1
chr175298867752988796+intron-Distal3.851348.60624HepG2SUGP2
chr175298811452988162+intron-Distal4.123654.10336HepG2SUGP2
chr175298542652985520+intron-Distal5.159248.39510HepG2SUGP2
chr175297967452979731+intron-Distal3.916803.21162HepG2HNRNPC
chr175302404453024091+intron-Distal3.885023.63454HepG2SUGP2
chr175298928752989334+intron-Distal3.025973.00129HepG2SUGP2
chr175298867752988781+intron-Distal4.042926.98272HepG2MATR3
chr175298671952986783+intron-Distal3.430984.36650HepG2SUGP2
chr175298541152985500+intron-Distal4.933736.08205HepG2MATR3
chr175298885252988915+intron-Distal3.354984.36650HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TOM1L1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TOM1L1 is not available on ENCORE database.

  • 73 RBPs can affect the levels of TOM1L1.  








The Knockdown/knockout RNA-Seq assay for TOM1L1 is not available on ENCORE database.





73 RBPs can affect the gene expression of TOM1L1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TOM1L1ENSG00000141198.91110.95190874.895900.344502.341601.47280HepG2ABCF1
TOM1L1ENSG00000141198.91438.882601086.682900.404902.574702.06040HepG2AKAP1
TOM1L1ENSG00000141198.9899.69980684.194100.394904.264703.32690HepG2AKAP8L
TOM1L1ENSG00000141198.91156.31410899.152500.362802.405401.66880HepG2ASCC1
TOM1L1ENSG00000141198.9992.772601321.79780-0.413005.869804.93240HepG2AUH
TOM1L1ENSG00000141198.91207.14880854.252400.498804.264403.31850HepG2CIRBP
TOM1L1ENSG00000141198.91160.47250680.842300.7692018.0016016.62830HepG2CKAP4
TOM1L1ENSG00000141198.91163.17720849.827600.452703.879903.07820HepG2CPSF6
TOM1L1ENSG00000141198.9703.111101179.08900-0.7458016.6661015.11120HepG2DAZAP1
TOM1L1ENSG00000141198.9902.45560629.830000.518807.968406.67760HepG2DDX19B
TOM1L1ENSG00000141198.91300.15660754.594400.7848011.009609.76060HepG2DDX21
TOM1L1ENSG00000141198.91408.504601040.989200.436103.298602.62360HepG2DDX3X
TOM1L1ENSG00000141198.9596.90020894.16250-0.583004.156103.41060HepG2DDX6
TOM1L1ENSG00000141198.9848.59060651.540500.381103.727102.96380HepG2DKC1
TOM1L1ENSG00000141198.9508.40970726.35350-0.514706.774305.81750HepG2DNAJC2
TOM1L1ENSG00000141198.91473.06220950.045500.632605.735104.81580HepG2EIF4A3
TOM1L1ENSG00000141198.9885.544201114.36890-0.331602.165001.43780HepG2EIF4G2
TOM1L1ENSG00000141198.91005.47760758.081700.407403.428402.21820HepG2ESF1
TOM1L1ENSG00000141198.91940.022101517.643600.354105.253304.47240HepG2ETF1
TOM1L1ENSG00000141198.9908.45480665.451400.449004.034503.02660HepG2EWSR1
TOM1L1ENSG00000141198.9423.98690632.90880-0.578003.460802.04970HepG2FKBP4
TOM1L1ENSG00000141198.9797.94830537.650500.569505.646804.53560HepG2FUBP3
TOM1L1ENSG00000141198.91375.49520943.890000.543205.064003.84770HepG2G3BP2
TOM1L1ENSG00000141198.9668.36740509.592200.391202.300801.49110HepG2GEMIN5
TOM1L1ENSG00000141198.91096.30470822.930100.413703.341502.58570HepG2HNRNPC
TOM1L1ENSG00000141198.9803.65110971.40890-0.273502.468601.78870HepG2HNRNPF
TOM1L1ENSG00000141198.9660.69900900.23370-0.446303.279302.52040HepG2HNRNPK
TOM1L1ENSG00000141198.9708.226301074.03460-0.6008010.784309.53040HepG2HNRNPL
TOM1L1ENSG00000141198.91303.46110919.387100.503504.527703.74110HepG2HNRNPLL
TOM1L1ENSG00000141198.9678.10310817.48900-0.269702.217601.66940HepG2HNRNPU
TOM1L1ENSG00000141198.9722.65010956.55820-0.404603.758102.92480HepG2IGF2BP1
TOM1L1ENSG00000141198.9990.56130835.037200.246302.585101.87440HepG2ILF2
TOM1L1ENSG00000141198.9666.68760964.17290-0.532303.741003.01730HepG2MATR3
TOM1L1ENSG00000141198.9759.571501169.18670-0.622208.835707.49600HepG2NOL12
TOM1L1ENSG00000141198.9432.20320654.22620-0.598102.828901.92830HepG2PABPC1
TOM1L1ENSG00000141198.91186.55370964.964000.298102.928902.30770HepG2PCBP1
TOM1L1ENSG00000141198.91067.66000586.715600.8636010.445009.00580HepG2PRPF8
TOM1L1ENSG00000141198.91162.64530981.831100.243802.040401.55840HepG2PTBP1
TOM1L1ENSG00000141198.91548.092301183.949200.386804.365403.53320HepG2PUM2
TOM1L1ENSG00000141198.9912.73710693.654400.395904.683803.92300HepG2PUS1
TOM1L1ENSG00000141198.9335.544501063.46620-1.6642035.2981033.47630HepG2QKI
TOM1L1ENSG00000141198.91495.525301268.460300.237501.871401.42390HepG2RBM22
TOM1L1ENSG00000141198.9856.526001046.47840-0.289001.977401.38850HepG2RPLP0
TOM1L1ENSG00000141198.9501.97070826.17030-0.718804.697303.47970HepG2RPS10
TOM1L1ENSG00000141198.9734.29720556.943900.398702.850402.22770HepG2RPS19
TOM1L1ENSG00000141198.91228.79370865.597900.505403.180302.45630HepG2SF3A3
TOM1L1ENSG00000141198.91312.545001022.313000.360404.121603.42300HepG2SF3B4
TOM1L1ENSG00000141198.91545.698801067.032600.534608.682407.95060HepG2SRSF1
TOM1L1ENSG00000141198.9726.522901102.03250-0.601109.538608.47090HepG2SRSF5
TOM1L1ENSG00000141198.9741.51780868.05270-0.227301.906101.43210HepG2SRSF9
TOM1L1ENSG00000141198.91006.072101243.86350-0.306103.536602.97290HepG2SSB
TOM1L1ENSG00000141198.91032.46670756.957500.447703.283102.55360HepG2SUPV3L1
TOM1L1ENSG00000141198.91533.47260958.977200.6771012.3158011.26190HepG2TAF15
TOM1L1ENSG00000141198.9976.09530794.326000.297202.301701.83690HepG2TIAL1
TOM1L1ENSG00000141198.9664.11340801.44530-0.271202.202401.68790HepG2TRIM56
TOM1L1ENSG00000141198.9869.065701090.44030-0.327402.438601.62170HepG2TUFM
TOM1L1ENSG00000141198.9928.17830723.618900.359104.004203.22020HepG2ZC3H8
TOM1L1ENSG00000141198.9653.89410844.27170-0.368704.259803.62050HepG2ZNF622
TOM1L1ENSG00000141198.9746.89460534.689600.482103.708602.32160K562AARS
TOM1L1ENSG00000141198.9804.782001092.19240-0.440603.416602.77910K562AQR
TOM1L1ENSG00000141198.9493.10140661.51760-0.423902.364901.56450K562BOP1
TOM1L1ENSG00000141198.91235.92590971.068200.347802.659701.40780K562CIRBP
TOM1L1ENSG00000141198.9474.81180624.74820-0.395903.123801.71330K562DDX6
TOM1L1ENSG00000141198.9476.99850642.37900-0.429403.492902.60480K562EIF3G
TOM1L1ENSG00000141198.9331.74560579.77710-0.8054010.091507.76600K562EIF4B
TOM1L1ENSG00000141198.9981.853001178.76220-0.263702.457901.56790K562EIF4G2
TOM1L1ENSG00000141198.9680.08900508.068800.420602.499801.43560K562FKBP4
TOM1L1ENSG00000141198.9911.96110666.292200.452702.599101.91750K562G3BP2
TOM1L1ENSG00000141198.9454.93370671.55840-0.561904.702103.67130K562GPKOW
TOM1L1ENSG00000141198.9603.24970927.37040-0.620406.713705.52890K562GRSF1
TOM1L1ENSG00000141198.9530.68570783.92470-0.562902.917001.30550K562HNRNPAB
TOM1L1ENSG00000141198.9568.57170805.07830-0.501802.609501.58500K562HNRNPL
TOM1L1ENSG00000141198.9512.02700809.66220-0.661108.581407.02040K562HNRNPU
TOM1L1ENSG00000141198.9455.76590684.37990-0.586506.850905.62530K562MTPAP
TOM1L1ENSG00000141198.9619.98600760.42620-0.294602.747902.00390K562NSUN2
TOM1L1ENSG00000141198.9387.40250494.19180-0.351202.092801.39630K562POLR2G
TOM1L1ENSG00000141198.91279.24270995.687200.361402.528902.00440K562PUS1
TOM1L1ENSG00000141198.9618.61460933.59260-0.593805.596603.96330K562NELFE
TOM1L1ENSG00000141198.9721.97380906.90880-0.329002.409401.74170K562SRSF1
TOM1L1ENSG00000141198.9677.66030885.40120-0.385803.205302.31490K562TIA1
TOM1L1ENSG00000141198.9484.13000646.11690-0.416402.297601.31330K562U2AF1
TOM1L1ENSG00000141198.9618.37690806.29450-0.382803.853403.01770K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TOM1L1 is not available on ENCORE database.





14 RBPs can affect the splicing of TOM1L1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETOM1L1ENSG00000141198.9chr17+5298106852981153529782115297828452982849529829280.118000.006280.09084includedK562SRSF1
SETOM1L1ENSG00000141198.9chr17+5298106852981153529782115297828452990026529901760.122000.000600.04014includedHepG2AKAP1
SETOM1L1ENSG00000141198.9chr17+529810685298115352978112529782845299002652990176-0.196000.004860.04546excludedK562AQR
SETOM1L1ENSG00000141198.9chr17+5298284952982928529781665297828452990026529901760.340000.001500.09722includedK562SUPV3L1
SETOM1L1ENSG00000141198.9chr17+529810685298115352978211529782845298284952982928-0.145000.003610.04835excludedK562PUS1
SETOM1L1ENSG00000141198.9chr17+5298106852981153529782115297828452990026529901760.126000.000960.05489includedHepG2NCBP2
SETOM1L1ENSG00000141198.9chr17+5298524552985420529781665297828452990026529901760.360000.002910.09276includedHepG2MATR3
SETOM1L1ENSG00000141198.9chr17+529810685298115352978112529782845299002652990176-0.190000.000000.00006excludedHepG2SF3A3
SETOM1L1ENSG00000141198.9chr17+5298106852981153529782115297828452990026529901760.164000.000050.00692includedHepG2IGF2BP3
SETOM1L1ENSG00000141198.9chr17+529810685298115352978211529782845299002652990176-0.262000.002470.07474excludedK562TARDBP
SETOM1L1ENSG00000141198.9chr17+529810685298115352978211529782845299002652990176-0.162000.004230.08076excludedK562RBM15
SETOM1L1ENSG00000141198.9chr17+529810685298115352978211529782845298284952982928-0.182000.000380.01282excludedK562AGGF1
SETOM1L1ENSG00000141198.9chr17+529828495298292852978166529782845299002652990176-0.321000.000030.00299excludedK562HNRNPK
MXETOM1L1ENSG00000141198.9chr17+5298284952982928529851995298542052978166529782845299002652990176-0.116000.002520.060222includedHepG2MATR3
MXETOM1L1ENSG00000141198.9chr17+5298284952982928529852455298542052978166529782845299002652990176-0.114000.002530.060222includedHepG2MATR3
MXETOM1L1ENSG00000141198.9chr17+52982849529829285299002652990176529810685298115352991108529912340.166000.002150.026581includedHepG2SFPQ

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TOM1L1 is not avaliable on ENCORE database.