TNFSF9

General Information

Gene Name       : TNFSF9
Gene ID             : ENSG00000125657.4
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TNFSF9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TNFSF9ENSG00000125657.48.4910.019.25ENCSR000AEF
HepG2TNFSF9ENSG00000125657.40.670.640.66ENCSR985KAT
K562TNFSF9ENSG00000125657.44.633.133.88ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TNFSF9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TNFSF9 RNA is bound by 18 proteins.  







eCLIP assay for TNFSF9 is not avaliable on ENCORE database.





18 proteins are bound to TNFSF9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1965351376535226+3'-UTR4.007787.53682K562PCBP1
chr1965351476535217+3'-UTR4.5937013.55882K562RBM15
chr1965354776535576+3'-UTR4.051724.88201K562ZC3H11A
chr1965349716535087+3'-UTR,CDS3.350894.06924K562IGF2BP2
chr1965358516535896+3'-UTR4.9104110.44987K562PABPC4
chr1965357346535748+3'-UTR4.149503.46958K562YBX3
chr1965348286534924+CDS3.922863.39325K562SRSF1
chr1965348476534889+CDS4.417838.03807K562RBM15
chr1965345856534660+CDS,intron-Proximal4.547075.97994K562AQR
chr1965347996534825+CDS4.236937.67660K562RBM15
chr1965347536534790+CDS4.663636.13673K562RBM15
chr1965348076534883+CDS3.368496.10587K562SND1
chr1965313136531348+CDS,intron-Proximal5.0641332.65529K562AQR
chr1965327756532849+CDS,intron-Proximal3.537813.77649K562EFTUD2
chr1965346126534663+CDS3.482206.49527K562SND1
chr1965327726532912+CDS,intron-Proximal3.143883.40600K562XRN2
chr1965348836535015+CDS3.731688.01224K562SND1
chr1965328166532890+CDS,intron-Proximal3.961474.06709K562EIF4G2
chr1965345146534621+CDS,intron-Proximal4.404897.80703K562SF3B4
chr1965348046534930+CDS3.373953.57831HepG2SND1
chr1965327976532827+CDS3.482203.88509K562SND1
chr1965327426532863+CDS,intron-Proximal3.969438.08874K562SF3B4
chr1965350126535055+CDS3.586343.34231K562RBM15
chr1965345956534683+CDS,intron-Proximal5.343459.98698K562BUD13
chr1965327446532837+CDS,intron-Proximal5.2538921.24327K562AQR
chr1965349066534966+CDS5.3288318.02740K562RBM15
chr1965340716534145+intron-Distal4.072625.23111K562HNRNPK
chr1965316966531789+intron-Distal3.340675.50444K562HNRNPK
chr1965345106534565+intron-Distal,intron-Proximal4.458384.80949K562HNRNPK
chr1965318516531937+intron-Distal4.686935.27102K562HNRNPK
chr1965339056533982+intron-Distal3.516354.76898K562CSTF2T
chr1965315246531664+intron-Distal3.507058.66543K562EIF4G2
chr1965340746534128+intron-Distal3.149043.40404K562CSTF2T
chr1965323716532482+intron-Distal4.379234.92524K562TARDBP
chr1965318726531939+intron-Distal4.309216.26655K562EIF4G2
chr1965324826532579+intron-Distal4.122444.13641K562TARDBP
chr1965323076532441+intron-Distal3.408244.20072K562IGF2BP1
chr1965326456532732+intron-Distal,intron-Proximal4.769546.36475K562CSTF2T
chr1965316006531662+intron-Distal3.730665.48056K562HNRNPK
chr1965313686531440+intron-Distal,intron-Proximal4.5361612.35151K562AQR
chr1965320486532131+intron-Distal4.980458.00756K562HNRNPK
chr1965326466532721+intron-Distal,intron-Proximal4.694109.07352K562EIF4G2
chr1965325116532682+intron-Distal5.5443221.07817K562SND1
chr1965313576531368+intron-Proximal5.082406.04760K562AQR
chr1965313486531357+intron-Proximal7.3197933.42897K562AQR
chr1965328376532875+intron-Proximal3.693596.06472K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TNFSF9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TNFSF9 is not available on ENCORE database.

  • 52 RBPs can affect the levels of TNFSF9.  








The Knockdown/knockout RNA-Seq assay for TNFSF9 is not available on ENCORE database.





52 RBPs can affect the gene expression of TNFSF9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TNFSF9ENSG00000125657.353.1349022.424901.244502.873802.09320HepG2AKAP8L
TNFSF9ENSG00000125657.356.1633030.280600.891101.932901.37720HepG2CELF1
TNFSF9ENSG00000125657.375.1554032.554101.206903.915503.05760HepG2DAZAP1
TNFSF9ENSG00000125657.33.8069020.58680-2.435002.761902.08410HepG2DDX21
TNFSF9ENSG00000125657.3110.8171036.114401.617406.158505.26530HepG2DDX6
TNFSF9ENSG00000125657.39.5191038.33910-2.009903.790203.04700HepG2EIF4A3
TNFSF9ENSG00000125657.38.4339032.12090-1.929203.207302.32000HepG2EIF4G1
TNFSF9ENSG00000125657.312.6181038.12390-1.595202.600501.73950HepG2G3BP2
TNFSF9ENSG00000125657.372.9352033.403701.126502.778601.66430HepG2GRSF1
TNFSF9ENSG00000125657.359.0316029.652800.993202.305801.68250HepG2HNRNPL
TNFSF9ENSG00000125657.315.8140038.72200-1.292002.056601.48710HepG2MAGOH
TNFSF9ENSG00000125657.3164.5214032.689502.331309.953908.72400HepG2PUM2
TNFSF9ENSG00000125657.3121.2129027.835802.122406.942306.20990HepG2RBM22
TNFSF9ENSG00000125657.361.1552031.440200.959802.132301.67430HepG2SRFBP1
TNFSF9ENSG00000125657.376.6104028.003301.451804.999704.29820HepG2SRSF9
TNFSF9ENSG00000125657.37.4191027.29870-1.879502.647802.14220HepG2SSB
TNFSF9ENSG00000125657.37.7945029.76670-1.933202.095901.45710HepG2XRN2
TNFSF9ENSG00000125657.357.2108017.829301.681904.734404.06780HepG2ZNF622
TNFSF9ENSG00000125657.3397.08590100.753501.9785010.345409.33870K562AGGF1
TNFSF9ENSG00000125657.3230.32050110.726201.056507.509305.68280K562AKAP8
TNFSF9ENSG00000125657.3398.32760104.841901.9256016.7086014.85960K562AKAP8L
TNFSF9ENSG00000125657.3190.98210110.010600.795704.535603.33450K562ATP5C1
TNFSF9ENSG00000125657.3245.57720167.638900.550702.813301.69730K562CPEB4
TNFSF9ENSG00000125657.3171.82550104.219700.721202.914201.82960K562CSTF2
TNFSF9ENSG00000125657.3236.82280118.211701.002306.851104.53640K562DDX19B
TNFSF9ENSG00000125657.3109.15750173.40530-0.667702.967602.29450K562DDX47
TNFSF9ENSG00000125657.3279.72900200.184800.482602.651301.38380K562DDX6
TNFSF9ENSG00000125657.328.8023094.00770-1.706604.956103.56680K562EIF3A
TNFSF9ENSG00000125657.3131.7140075.952900.794102.959402.08080K562FIP1L1
TNFSF9ENSG00000125657.387.17540214.52360-1.299109.682208.63130K562FXR1
TNFSF9ENSG00000125657.3152.3910097.881200.638602.186901.47930K562GPKOW
TNFSF9ENSG00000125657.3199.0670077.790201.355505.126903.30050K562HNRNPA2B1
TNFSF9ENSG00000125657.3313.56100169.140400.890405.302703.69120K562IGF2BP2
TNFSF9ENSG00000125657.3253.85250172.025400.561302.911101.68340K562IGF2BP3
TNFSF9ENSG00000125657.3265.01710111.251901.252209.832408.01840K562KIF1C
TNFSF9ENSG00000125657.3120.37690177.36140-0.559102.251501.42680K562MATR3
TNFSF9ENSG00000125657.3282.97000124.631901.1829010.329108.36730K562MBNL1
TNFSF9ENSG00000125657.3386.51440245.173000.656603.127401.92420K562MSI2
TNFSF9ENSG00000125657.3228.7479087.358901.388605.445104.06120K562NAA15
TNFSF9ENSG00000125657.3149.9159068.002201.140403.254002.15630K562PABPN1
TNFSF9ENSG00000125657.3169.4025086.237900.974004.964103.81410K562PPIG
TNFSF9ENSG00000125657.3165.6352080.805701.035402.795701.34980K562PPP1R8
TNFSF9ENSG00000125657.3206.67130139.263700.569402.182101.38670K562PSIP1
TNFSF9ENSG00000125657.3391.06500103.950901.9114023.3557021.79790K562PUS1
TNFSF9ENSG00000125657.3330.31720101.303901.7051010.431509.30420K562RBM15
TNFSF9ENSG00000125657.3107.61920195.22410-0.859204.161902.19410K562RBM17
TNFSF9ENSG00000125657.3254.34130165.557100.619303.306902.38220K562RBM22
TNFSF9ENSG00000125657.358.42590124.81840-1.095204.115303.11650K562RPS19
TNFSF9ENSG00000125657.3148.6931062.165501.258103.322301.97030K562SF1
TNFSF9ENSG00000125657.3279.95570184.239700.603503.675102.74310K562SF3A3
TNFSF9ENSG00000125657.337.3495090.44040-1.275904.502003.44860K562SYNCRIP
TNFSF9ENSG00000125657.3284.02710197.991400.520502.891502.15690K562UPF1
TNFSF9ENSG00000125657.3318.82070105.419101.596505.535803.52260K562UTP18
TNFSF9ENSG00000125657.3121.22010176.16500-0.539302.345801.56160K562WDR43
TNFSF9ENSG00000125657.3336.86790239.753300.490502.783801.91810K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TNFSF9 is not available on ENCORE database.






No RBPs affect the alternative splcing events of TNFSF9 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for TNFSF9 is not avaliable on ENCORE database.