TAF6

General Information

Gene Name       : TAF6
Gene ID             : ENSG00000106290.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TAF6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TAF6ENSG00000106290.1411.0716.9414.01ENCSR000AEF
HepG2TAF6ENSG00000106290.1432.3021.8327.06ENCSR985KAT
K562TAF6ENSG00000106290.1449.1939.9244.55ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TAF6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TAF6 RNA is bound by 11 proteins.  







eCLIP assay for TAF6 is not avaliable on ENCORE database.





11 proteins are bound to TAF6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr79970496699705042-3'-UTR,CDS,intron-Distal4.769575.13929K562PCBP1
chr79970762199707716-3'-UTR,CDS,intron-Distal,intron-Proximal4.112014.47532K562U2AF2
chr79971177999711874-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.645154.08283K562DDX3X
chr79970508799705130-3'-UTR,CDS,intron-Distal5.085908.92431K562IGF2BP2
chr79970519199705247-3'-UTR,CDS,intron-Distal4.1451118.26421K562IGF2BP2
chr79970470099704740-3'-UTR,intron-Distal,intron-Proximal,polyA_site6.1990814.67371K562PUM2
chr79970769299707766-3'-UTR,CDS,intron-Distal,intron-Proximal4.400424.07325HepG2SF3B4
chr79970521299705247-3'-UTR,CDS,intron-Distal3.592753.60582K562PCBP1
chr79970481599704905-3'-UTR,CDS,intron-Distal4.9479516.73390K562IGF2BP2
chr79970554899705581-3'-UTR,CDS,intron-Distal,intron-Proximal3.056248.28260K562IGF2BP2
chr79970481199704876-3'-UTR,CDS,intron-Distal3.582215.70424K562IGF2BP1
chr79970511899705207-3'-UTR,CDS,intron-Distal3.310873.52704HepG2IGF2BP1
chr79970756399707704-3'-UTR,CDS,intron-Distal,intron-Proximal4.0701112.59726HepG2PPIG
chr79970513599705191-3'-UTR,CDS,intron-Distal5.2321720.06091K562IGF2BP2
chr79971684199716968-5'-UTR,intron-Distal,intron-Proximal3.524994.75208K562DDX3X
chr79971685299716968-5'-UTR,intron-Distal,intron-Proximal5.0404515.96203HepG2DDX3X
chr79971692399716975-5'-UTR,intron-Distal,intron-Proximal4.302164.52089HepG2NCBP2
chr79971176599711805-5'-UTR,CDS,intron-Distal,intron-Proximal4.832064.67689HepG2PPIG
chr79971149099711517-CDS,intron-Distal,intron-Proximal3.985553.86978K562YBX3
chr79971137199711393-CDS,intron-Distal,intron-Proximal4.175084.55095K562YBX3
chr79971149099711541-CDS,intron-Distal,intron-Proximal3.354963.86355HepG2PPIG
chr79970769999707762-intron-Distal,intron-Proximal6.2467010.24170HepG2SF3A3
chr79970945899709525-intron-Distal,intron-Proximal3.673494.57435K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TAF6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TAF6 is not available on ENCORE database.

  • 62 RBPs can affect the levels of TAF6.  








The Knockdown/knockout RNA-Seq assay for TAF6 is not available on ENCORE database.





62 RBPs can affect the gene expression of TAF6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TAF6ENSG00000106290.10921.014401209.03860-0.392603.165602.53010HepG2BOP1
TAF6ENSG00000106290.10415.79880729.12520-0.810303.734402.85720HepG2CALR
TAF6ENSG00000106290.10656.241701109.96840-0.758208.767007.60390HepG2CPSF6
TAF6ENSG00000106290.10992.31290770.064300.365703.925103.18380HepG2CELF1
TAF6ENSG00000106290.10350.74130490.86670-0.484902.450901.59590HepG2DDX24
TAF6ENSG00000106290.10428.34320571.06710-0.414902.360801.33900HepG2EFTUD2
TAF6ENSG00000106290.10355.91980716.42790-1.009302.671401.99440HepG2EIF4B
TAF6ENSG00000106290.10607.12750816.86950-0.428104.277103.27940HepG2EIF4G1
TAF6ENSG00000106290.101126.81390742.652400.601402.602401.93180HepG2FXR1
TAF6ENSG00000106290.101021.05490841.777900.278402.504501.82100HepG2HNRNPF
TAF6ENSG00000106290.10898.984001200.76950-0.417603.119002.45560HepG2HNRNPLL
TAF6ENSG00000106290.10660.12340513.894100.361203.187902.54080HepG2HNRNPU
TAF6ENSG00000106290.10693.84570524.929400.402404.379703.47640HepG2ILF2
TAF6ENSG00000106290.10768.20570410.858600.902804.151702.39820HepG2NOLC1
TAF6ENSG00000106290.10843.391101064.70170-0.336202.212701.54120HepG2NSUN2
TAF6ENSG00000106290.10621.69660458.356200.439602.793902.05380HepG2PPIL4
TAF6ENSG00000106290.10304.17660422.99760-0.475702.413101.65710HepG2PRPF8
TAF6ENSG00000106290.10606.10480864.49960-0.512306.992206.08980HepG2PUS1
TAF6ENSG00000106290.10773.727201126.52680-0.542006.301805.59690HepG2RBM22
TAF6ENSG00000106290.10716.47930457.657800.646609.072508.01190HepG2SAFB2
TAF6ENSG00000106290.10928.732001188.53260-0.355802.615301.92890HepG2SF3B1
TAF6ENSG00000106290.10771.427501322.44810-0.777605.753604.61770HepG2SNRNP70
TAF6ENSG00000106290.10623.56190823.38510-0.401003.574003.05340HepG2SRSF1
TAF6ENSG00000106290.10897.210301278.84240-0.511303.534202.39030HepG2SRSF3
TAF6ENSG00000106290.10907.98720773.833800.230501.960301.42190HepG2SRSF5
TAF6ENSG00000106290.10888.381801104.62120-0.314303.566703.00080HepG2SSB
TAF6ENSG00000106290.101047.41430880.031900.251102.626102.01680HepG2SUCLG1
TAF6ENSG00000106290.10535.65130740.20820-0.466603.962703.31080HepG2TAF15
TAF6ENSG00000106290.10914.955401170.34150-0.355202.601301.89510HepG2TARDBP
TAF6ENSG00000106290.10754.23600503.802900.582107.625006.76590HepG2TRIM56
TAF6ENSG00000106290.10775.291801076.15130-0.473104.091903.33400HepG2U2AF1
TAF6ENSG00000106290.102454.015801897.409100.371006.505505.68840K562AGGF1
TAF6ENSG00000106290.101414.56490995.005900.507504.982603.47390K562CCAR1
TAF6ENSG00000106290.102183.634701807.403500.272703.239401.92420K562DDX21
TAF6ENSG00000106290.101219.34390972.997300.325502.763401.72250K562DDX3X
TAF6ENSG00000106290.101215.12520986.498100.300602.884901.54100K562DDX6
TAF6ENSG00000106290.101623.220101113.980500.543005.567503.55200K562DHX30
TAF6ENSG00000106290.101835.548401576.068200.219802.120801.47710K562EIF2S2
TAF6ENSG00000106290.10761.53400481.891300.660107.896106.55760K562EIF3G
TAF6ENSG00000106290.101327.676201016.554000.385103.403402.49710K562EIF4A3
TAF6ENSG00000106290.102808.793702307.544800.283503.766302.67200K562EIF4G2
TAF6ENSG00000106290.101168.90000887.355700.397503.841702.28730K562EWSR1
TAF6ENSG00000106290.101787.701501392.070500.360803.666702.18140K562EXOSC5
TAF6ENSG00000106290.10718.57770984.42480-0.454103.306802.05430K562FKBP4
TAF6ENSG00000106290.10128.99970415.29440-1.6868011.275509.65430K562G3BP2
TAF6ENSG00000106290.101734.125102100.28920-0.276402.234501.55150K562GRSF1
TAF6ENSG00000106290.102288.371201818.147400.331803.574702.55880K562HNRNPU
TAF6ENSG00000106290.101310.08740729.812700.844005.699204.00150K562IGF2BP2
TAF6ENSG00000106290.10993.14280742.160300.420203.581702.18500K562IGF2BP3
TAF6ENSG00000106290.101100.71010766.613500.521805.563004.35900K562MAGOH
TAF6ENSG00000106290.101049.96040764.998900.456704.525503.32000K562MATR3
TAF6ENSG00000106290.102305.482701993.733400.209503.065602.28360K562NSUN2
TAF6ENSG00000106290.101001.95920749.547000.418603.947702.32100K562PCBP1
TAF6ENSG00000106290.102247.726002677.91560-0.252602.317501.34820K562PUM1
TAF6ENSG00000106290.101586.920801957.96050-0.303101.912101.44510K562PUS1
TAF6ENSG00000106290.102251.034301907.779200.238602.425601.86390K562RBM15
TAF6ENSG00000106290.101027.59840696.178400.561605.053302.99420K562RBM34
TAF6ENSG00000106290.101273.17240927.216300.457304.706803.41050K562RCC2
TAF6ENSG00000106290.101085.97570799.520100.441702.585501.61960K562RPS3
TAF6ENSG00000106290.101293.75410878.948000.557605.983304.31220K562SRFBP1
TAF6ENSG00000106290.101094.32000730.237600.583506.771505.67630K562SRSF1
TAF6ENSG00000106290.101104.17290771.680900.516805.158903.64480K562SRSF4
TAF6ENSG00000106290.10999.30220689.763100.534705.086803.58310K562SRSF5
TAF6ENSG00000106290.101189.56010866.191600.457603.263102.15450K562SUPV3L1
TAF6ENSG00000106290.101395.31900738.953600.9169013.7370011.93180K562TARDBP
TAF6ENSG00000106290.101128.98230712.829000.663303.510202.57100K562TIA1
TAF6ENSG00000106290.101102.07900699.721100.655305.323703.69810K562TRA2A
TAF6ENSG00000106290.101420.360801038.413600.451804.161102.95200K562TRIM56
TAF6ENSG00000106290.10303.51550415.47560-0.453002.567501.79340K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TAF6 is not available on ENCORE database.





28 RBPs can affect the splicing of TAF6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETAF6ENSG00000106290.10chr7-9971614099716272997116769971189199716826997169950.155000.001310.04566includedK562PRPF8
SETAF6ENSG00000106290.10chr7-997059899970616399705548997057469970757099707696-0.132000.005750.08443excludedHepG2U2AF1
SETAF6ENSG00000106290.10chr7-997109719971102899710420997105409971123899711392-0.200000.000000.00000excludedHepG2U2AF1
SETAF6ENSG00000106290.10chr7-9971614099716272997116769971189199716826997169950.322000.000000.00001includedK562XRCC6
SETAF6ENSG00000106290.10chr7-997109719971102899710420997105409971123899711392-0.281000.000000.00000excludedHepG2U2AF2
SETAF6ENSG00000106290.10chr7-997109719971139299710420997105409971149099711577-0.101000.000000.00000excludedK562AQR
SETAF6ENSG00000106290.10chr7-997109719971102899710420997105409971123899711392-0.056000.000620.01149excludedK562PUS1
SETAF6ENSG00000106290.10chr7-997109719971102899710420997105409971123899711392-0.060000.000080.02243excludedK562LARP4
SETAF6ENSG00000106290.10chr7-997109719971102899710420997105409971123899711392-0.151000.001940.08264excludedK562EFTUD2
SETAF6ENSG00000106290.10chr7-997109719971102899710420997105409971123899711392-0.557000.000030.00122excludedK562U2AF1
SETAF6ENSG00000106290.10chr7-997161409971627299711676997118919971682699716995-0.190000.000140.03907excludedK562SBDS
SETAF6ENSG00000106290.10chr7-997109719971102899710420997105409971123899711392-0.631000.000000.00021excludedK562U2AF2
SETAF6ENSG00000106290.10chr7-997161409971627299711676997118919971682699716995-0.079000.003320.09264excludedK562HNRNPU
SETAF6ENSG00000106290.10chr7-9971614099716272997116769971189199716826997169950.389000.000000.01925includedK562DDX55
SETAF6ENSG00000106290.10chr7-9971614099716272997116769971189199716826997169950.234000.000130.07016includedK562AARS
SETAF6ENSG00000106290.10chr7-9971614099716272997116769971189199716826997169950.389000.000000.00000includedK562HNRNPC
SETAF6ENSG00000106290.10chr7-997109719971102899710420997105409971123899711392-0.194000.000060.00165excludedK562HNRNPC
A3SSTAF6ENSG00000106290.10chr7-997109719971139299710971997110289971149099711577-0.101000.000070.00063shorterK562AQR
A5SSTAF6ENSG00000106290.10chr7-997109719971139299711238997113929971042099710540-0.623000.000140.01828shorterK562U2AF1
A5SSTAF6ENSG00000106290.10chr7-9971167699711891997117069971189199711490997115770.084000.000260.01274longerK562PUS1
A5SSTAF6ENSG00000106290.10chr7-997109719971139299711238997113929971042099710540-0.124000.000170.00896shorterK562PUS1
A5SSTAF6ENSG00000106290.10chr7-997109719971139299711238997113929971042099710540-0.096000.001110.08626shorterK562AGGF1
A5SSTAF6ENSG00000106290.10chr7-9971167699711891997117069971189199711490997115770.075000.000740.03097longerHepG2U2AF2
A5SSTAF6ENSG00000106290.10chr7-997109719971139299711238997113929971042099710540-0.649000.000000.00000shorterHepG2U2AF2
A5SSTAF6ENSG00000106290.10chr7-997109719971139299711238997113929971042099710540-0.314000.000300.02836shorterK562HNRNPC
A5SSTAF6ENSG00000106290.10chr7-997109719971139299711238997113929971042099710540-0.762000.000000.00028shorterK562U2AF2
A5SSTAF6ENSG00000106290.10chr7-9971167699711891997117069971189199711490997115770.071000.000950.07820longerK562AKAP8L
A5SSTAF6ENSG00000106290.10chr7-997109719971139299711238997113929971042099710540-0.335000.000050.01270shorterK562SF3B1
A5SSTAF6ENSG00000106290.10chr7-997109719971139299711238997113929971042099710540-0.366000.000000.00000shorterHepG2U2AF1
RITAF6ENSG00000106290.10chr7-997109719971139299710971997110289971123899711392-0.093000.000170.04789excludedK562GEMIN5
RITAF6ENSG00000106290.10chr7-997109719971139299710971997110289971123899711392-0.101000.000020.00409excludedK562NONO
RITAF6ENSG00000106290.10chr7-9971097199711392997109719971102899711238997113920.095000.000460.00469includedHepG2U2AF2
RITAF6ENSG00000106290.10chr7-997109719971139299710971997110289971123899711392-0.098000.000040.00736excludedK562UCHL5
RITAF6ENSG00000106290.10chr7-997109719971139299710971997110289971123899711392-0.082000.010080.09555excludedK562PRPF8
RITAF6ENSG00000106290.10chr7-9971097199711392997109719971102899711238997113920.072000.000820.02325includedHepG2FTO
RITAF6ENSG00000106290.10chr7-997109719971139299710971997110289971123899711392-0.088000.000320.03645excludedK562XRN2
RITAF6ENSG00000106290.10chr7-9971097199711392997109719971102899711238997113920.104000.001010.02433includedK562RBM22
RITAF6ENSG00000106290.10chr7-9971097199711392997109719971102899711238997113920.063000.001300.01448includedHepG2U2AF1
RITAF6ENSG00000106290.10chr7-997109719971139299710971997110289971123899711392-0.097000.000020.00244excludedK562SUPV3L1
RITAF6ENSG00000106290.10chr7-9971097199711392997109719971102899711238997113920.082000.000480.00783includedHepG2NCBP2
RITAF6ENSG00000106290.10chr7-997109719971139299710971997110289971123899711392-0.055000.000690.01409excludedK562FXR1
MXETAF6ENSG00000106290.10chr7-99710971997110289971123899711392997104209971054099711490997115770.110000.001590.095351includedK562HNRNPL
MXETAF6ENSG00000106290.10chr7-99710971997110289971123899711392997104209971054099711490997115770.200000.000460.028151includedK562SF3B1
MXETAF6ENSG00000106290.10chr7-9970554899705746997059899970616399704790997052469970757099707696-0.287000.000150.003802includedHepG2SFPQ
MXETAF6ENSG00000106290.10chr7-9971097199711028997112389971139299710420997105409971149099711577-0.188000.000680.025122includedHepG2XRN2
MXETAF6ENSG00000106290.10chr7-9971097199711028997112389971139299710420997105409971149099711577-0.211000.000080.003492includedHepG2DDX55
MXETAF6ENSG00000106290.10chr7-99710971997110289971123899711392997104209971054099711490997115770.185000.001620.012261includedHepG2U2AF2
MXETAF6ENSG00000106290.10chr7-99710971997110289971123899711392997104209971054099711490997115770.119000.000360.079681includedK562MTPAP
MXETAF6ENSG00000106290.10chr7-9971097199711028997112389971139299710420997105409971149099711577-0.201000.001630.052702includedHepG2SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TAF6 is not avaliable on ENCORE database.