STXBP3

General Information

Gene Name : STXBP3
Gene ID : ENSG00000116266.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: STXBP3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	STXBP3	ENSG00000116266.10	19.86	17.96	18.91	ENCSR000AEF
HepG2	STXBP3	ENSG00000116266.10	9.22	19.21	14.21	ENCSR985KAT
K562	STXBP3	ENSG00000116266.10	25.26	26.89	26.08	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for STXBP3 is not avaliable on ENCORE database.

Proteins bound to RNA

STXBP3 RNA is bound by 19 proteins.

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eCLIP assay for STXBP3 is not avaliable on ENCORE database.

19 proteins are bound to STXBP3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	109351766	109351849	+	3'-UTR	5.74530	68.73674	K562	PUM2
chr1	109351555	109351634	+	3'-UTR	5.11067	25.48862	K562	PUM2
chr1	109351913	109351960	+	3'-UTR	4.23432	20.67847	K562	PUM2
chr1	109289435	109289542	+	intron-Distal,intron-Proximal	6.20139	13.01998	K562	EFTUD2
chr1	109351676	109351731	+	3'-UTR	4.05903	12.07261	K562	PUM2
chr1	109289318	109289409	+	5'-UTR,CDS,intron-Proximal	4.20415	11.06379	K562	ZNF622
chr1	109320806	109320899	+	intron-Distal	4.84426	8.24653	K562	KHSRP
chr1	109299647	109299723	+	intron-Distal	4.63855	6.93191	K562	KHSRP
chr1	109295714	109295807	+	CDS,intron-Proximal	4.88892	6.80771	K562	PRPF8
chr1	109302472	109302564	+	intron-Distal,intron-Proximal	3.01170	6.62024	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 35 entries

eCLIP assay for STXBP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for STXBP3 is not available on ENCORE database.
65 RBPs can affect the levels of STXBP3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for STXBP3 is not available on ENCORE database.

65 RBPs can affect the gene expression of STXBP3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
STXBP3	ENSG00000116266.6	1336.04920	825.93910	0.69380	15.48920	14.55760	HepG2	SRFBP1
STXBP3	ENSG00000116266.6	3144.58740	2102.57320	0.58060	10.62990	8.46940	K562	PUM1
STXBP3	ENSG00000116266.6	1538.05910	888.60050	0.79140	9.39840	8.30380	HepG2	DDX3X
STXBP3	ENSG00000116266.6	685.65400	402.27590	0.76920	8.72080	7.46090	HepG2	CALR
STXBP3	ENSG00000116266.6	1088.34540	748.83830	0.53930	7.87960	7.17670	HepG2	SRSF1
STXBP3	ENSG00000116266.6	1068.50640	731.24610	0.54710	7.51890	6.76310	HepG2	RBM22
STXBP3	ENSG00000116266.6	763.73600	446.16980	0.77540	7.52550	6.49590	HepG2	U2AF1
STXBP3	ENSG00000116266.6	1530.36910	927.58800	0.72220	6.94030	6.14020	HepG2	AKAP1
STXBP3	ENSG00000116266.6	985.79130	504.20480	0.96720	6.73370	5.65860	HepG2	RAVER1
STXBP3	ENSG00000116266.6	586.31170	338.75150	0.79130	6.69010	5.49650	HepG2	PRPF8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 71 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for STXBP3 is not available on ENCORE database.

1 RBPs can affect the splicing of STXBP3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	STXBP3	ENSG00000116266.6	chr1	+	109342841	109342927			109340766	109340859	109350022	109350171	-0.08500	0.00000	0.00002	excluded	K562	AQR
MXE	STXBP3	ENSG00000116266.6	chr1	+	109340699	109340859	109342841	109342927	109339241	109339348	109350022	109350171	0.08300	0.00000	0.00002	1included	K562	AQR
A3SS	STXBP3	ENSG00000116266.6	chr1	+	109339201	109339348			109339241	109339348	109338855	109338994	0.05200	0.00017	0.00143	longer	K562	AQR
A3SS	STXBP3	ENSG00000116266.6	chr1	+	109301131	109301210			109301138	109301210	109299311	109299388	-0.05400	0.00640	0.03588	shorter	K562	AQR
MXE	STXBP3	ENSG00000116266.6	chr1	+	109325043	109325139	109325249	109325328	109321866	109322032	109336203	109336269	-0.16300	0.01170	0.07192	2included	K562	AQR
MXE	STXBP3	ENSG00000116266.6	chr1	+	109325043	109325139	109325226	109325328	109321866	109322032	109336203	109336269	-0.16200	0.01280	0.07739	2included	K562	AQR

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

STXBP3

General Information

Functions

Localization

Domains (AlphaFold: STXBP3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for STXBP3 is not avaliable on ENCORE database.

19 proteins are bound to STXBP3 RNA:

eCLIP assay for STXBP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for STXBP3 is not available on ENCORE database.

65 RBPs can affect the gene expression of STXBP3 :

The Knockdown/knockout RNA-Seq assay for STXBP3 is not available on ENCORE database.

1 RBPs can affect the splicing of STXBP3 :

The Knockdown/knockout RNA-Seq assay for STXBP3 is not avaliable on ENCORE database.