STXBP3

General Information

Gene Name       : STXBP3
Gene ID             : ENSG00000116266.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: STXBP3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878STXBP3ENSG00000116266.1019.8617.9618.91ENCSR000AEF
HepG2STXBP3ENSG00000116266.109.2219.2114.21ENCSR985KAT
K562STXBP3ENSG00000116266.1025.2626.8926.08ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for STXBP3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • STXBP3 RNA is bound by 19 proteins.  







eCLIP assay for STXBP3 is not avaliable on ENCORE database.





19 proteins are bound to STXBP3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1109351555109351634+3'-UTR5.1106725.48862K562PUM2
chr1109351913109351960+3'-UTR4.2343220.67847K562PUM2
chr1109351766109351849+3'-UTR5.7453068.73674K562PUM2
chr1109351903109351978+3'-UTR3.247394.39540K562PUM1
chr1109351676109351731+3'-UTR4.0590312.07261K562PUM2
chr1109351566109351643+3'-UTR3.409984.05658K562DDX6
chr1109289318109289409+5'-UTR,CDS,intron-Proximal4.2041511.06379K562ZNF622
chr1109289313109289402+5'-UTR,CDS3.105654.23993HepG2NCBP2
chr1109289345109289410+5'-UTR,CDS,intron-Proximal4.706484.44756K562ZNF800
chr1109289327109289409+5'-UTR,CDS,intron-Proximal3.246783.97075K562NCBP2
chr1109299314109299392+CDS,intron-Proximal3.037895.69345HepG2BCLAF1
chr1109295714109295807+CDS,intron-Proximal4.888926.80771K562PRPF8
chr1109295714109295764+CDS4.296994.67299K562DDX24
chr1109338853109338926+CDS,intron-Proximal3.456175.95375K562ZNF622
chr1109294874109294929+CDS,intron-Proximal3.310895.87745K562BUD13
chr1109289379109289410+CDS,intron-Proximal3.506364.24672K562SMNDC1
chr1109295684109295780+CDS,intron-Proximal3.655754.80912HepG2PPIG
chr1109318952109318998+CDS,intron-Proximal4.756605.23259HepG2BCLAF1
chr1109289388109289409+CDS,intron-Proximal3.478444.46401K562DDX3X
chr1109350059109350143+CDS4.611845.23259HepG2BCLAF1
chr1109289374109289408+CDS5.649586.42144K562FASTKD2
chr1109338990109339078+CDS,intron-Proximal3.684883.88924K562PRPF8
chr1109295684109295769+CDS,intron-Proximal3.409095.22707K562GRWD1
chr1109289380109289410+CDS,intron-Proximal4.124804.90972K562DDX21
chr1109315237109315299+CDS,intron-Proximal3.563164.50936K562SF3B4
chr1109315391109315442+CDS,intron-Proximal3.673844.17155HepG2BCLAF1
chr1109302165109302235+intron-Distal3.021323.28806K562KHSRP
chr1109299647109299723+intron-Distal4.638556.93191K562KHSRP
chr1109299495109299572+intron-Distal4.270074.58794K562KHSRP
chr1109320806109320899+intron-Distal4.844268.24653K562KHSRP
chr1109298771109298895+intron-Distal4.322234.96658K562KHSRP
chr1109333447109333510+intron-Distal4.588785.62025K562KHSRP
chr1109302472109302564+intron-Distal,intron-Proximal3.011706.62024K562KHSRP
chr1109289435109289542+intron-Distal,intron-Proximal6.2013913.01998K562EFTUD2
chr1109301219109301294+intron-Proximal4.237274.31512K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for STXBP3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for STXBP3 is not available on ENCORE database.

  • 65 RBPs can affect the levels of STXBP3.  








The Knockdown/knockout RNA-Seq assay for STXBP3 is not available on ENCORE database.





65 RBPs can affect the gene expression of STXBP3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
STXBP3ENSG00000116266.6638.57700499.137000.355303.116302.47690HepG2ACO1
STXBP3ENSG00000116266.61530.36910927.588000.722206.940306.14020HepG2AKAP1
STXBP3ENSG00000116266.6961.32570762.052200.335002.065201.45560HepG2AUH
STXBP3ENSG00000116266.6685.65400402.275900.769208.720807.46090HepG2CALR
STXBP3ENSG00000116266.61538.05910888.600500.791409.398408.30380HepG2DDX3X
STXBP3ENSG00000116266.6584.15230439.045100.411902.142301.45360HepG2DDX55
STXBP3ENSG00000116266.6328.93260446.34100-0.440403.673502.94170HepG2DNAJC2
STXBP3ENSG00000116266.6563.30610733.80700-0.381502.172401.63960HepG2EIF2S1
STXBP3ENSG00000116266.6625.80670818.11330-0.386602.320101.68400HepG2FXR1
STXBP3ENSG00000116266.6201.43280314.48140-0.642703.604302.56970HepG2GEMIN5
STXBP3ENSG00000116266.6480.33880365.584400.393701.976401.43620HepG2HNRNPLL
STXBP3ENSG00000116266.6387.98560513.14180-0.403403.537502.71810HepG2ILF2
STXBP3ENSG00000116266.6590.32130818.39830-0.471303.186002.48250HepG2MAGOH
STXBP3ENSG00000116266.6641.11570842.40670-0.393902.268101.69230HepG2NCBP2
STXBP3ENSG00000116266.6332.68320448.06300-0.429603.011702.24630HepG2PPIL4
STXBP3ENSG00000116266.6586.31170338.751500.791306.690105.49650HepG2PRPF8
STXBP3ENSG00000116266.6985.79130504.204800.967206.733705.65860HepG2RAVER1
STXBP3ENSG00000116266.61068.50640731.246100.547107.518906.76310HepG2RBM22
STXBP3ENSG00000116266.6562.82840335.101600.748005.550104.47190HepG2RRP9
STXBP3ENSG00000116266.6360.33010447.37300-0.312201.962301.40440HepG2SAFB2
STXBP3ENSG00000116266.6731.31560402.627100.860905.816204.67560HepG2SNRNP70
STXBP3ENSG00000116266.61336.04920825.939100.6938015.4892014.55760HepG2SRFBP1
STXBP3ENSG00000116266.61088.34540748.838300.539307.879607.17670HepG2SRSF1
STXBP3ENSG00000116266.6359.80300462.90090-0.363502.197001.56860HepG2SRSF7
STXBP3ENSG00000116266.6733.53880471.175400.638503.613202.22650HepG2SUB1
STXBP3ENSG00000116266.6587.16240437.081100.425802.250901.63230HepG2SUPV3L1
STXBP3ENSG00000116266.6331.63980492.49680-0.570505.544204.79790HepG2TRIM56
STXBP3ENSG00000116266.6763.73600446.169800.775407.525506.49590HepG2U2AF1
STXBP3ENSG00000116266.6364.82970289.280500.334701.890401.32080HepG2ZC3H8
STXBP3ENSG00000116266.6574.51610477.712700.266101.933201.45380HepG2ZNF622
STXBP3ENSG00000116266.61013.17790664.209600.609105.647304.39060K562BOP1
STXBP3ENSG00000116266.6969.03160755.481600.359003.073501.47730K562CEBPZ
STXBP3ENSG00000116266.6978.98780706.211300.471104.474903.47830K562CPSF6
STXBP3ENSG00000116266.63032.371702227.656100.444806.606305.11550K562CELF1
STXBP3ENSG00000116266.6446.91170323.195100.467502.729901.39800K562DNAJC21
STXBP3ENSG00000116266.6713.01940993.70130-0.478905.242504.16330K562EIF3G
STXBP3ENSG00000116266.61118.66770718.619400.638402.990502.09980K562FMR1
STXBP3ENSG00000116266.6954.64640609.123400.648105.853204.47160K562FTO
STXBP3ENSG00000116266.61678.206201053.346300.671805.154604.12120K562G3BP2
STXBP3ENSG00000116266.6930.55420674.230600.464703.925102.98450K562GPKOW
STXBP3ENSG00000116266.61273.158301028.520100.307702.105401.39610K562KIF1C
STXBP3ENSG00000116266.6860.93480575.780500.580303.720702.62080K562KRR1
STXBP3ENSG00000116266.6538.47250740.99570-0.460603.066001.51700K562LIN28B
STXBP3ENSG00000116266.61024.412201310.11780-0.354902.502301.70120K562MAGOH
STXBP3ENSG00000116266.61042.463801307.53290-0.326902.783701.85770K562MATR3
STXBP3ENSG00000116266.6854.76830658.135900.377002.729001.85910K562METAP2
STXBP3ENSG00000116266.62407.207101931.171800.317802.792601.65800K562MSI2
STXBP3ENSG00000116266.6693.41750839.63340-0.276002.216201.48880K562MTPAP
STXBP3ENSG00000116266.61115.94530932.913900.258402.825502.07200K562NSUN2
STXBP3ENSG00000116266.6920.921401165.76800-0.340102.617701.66660K562PCBP2
STXBP3ENSG00000116266.6446.87160655.01780-0.551703.054502.09820K562PSIP1
STXBP3ENSG00000116266.6907.816201272.82560-0.487605.606404.68980K562PTBP1
STXBP3ENSG00000116266.62584.462701976.781500.386603.780002.83010K562PUF60
STXBP3ENSG00000116266.63144.587402102.573200.5806010.629908.46940K562PUM1
STXBP3ENSG00000116266.62580.924302060.150500.325004.465603.24060K562PUM2
STXBP3ENSG00000116266.61367.39000961.154600.508504.281803.62830K562PUS1
STXBP3ENSG00000116266.61520.038201004.974200.596803.358101.76550K562RAVER1
STXBP3ENSG00000116266.6430.92800597.65450-0.471903.620102.48770K562RCC2
STXBP3ENSG00000116266.6483.44730693.38920-0.520303.420502.29720K562RPS3
STXBP3ENSG00000116266.6400.84610547.30790-0.449302.931801.81790K562SAFB
STXBP3ENSG00000116266.61158.77840920.539300.332003.495002.58530K562SF3A3
STXBP3ENSG00000116266.6899.41530641.316800.487903.303902.23850K562SF3B1
STXBP3ENSG00000116266.6907.137801095.08870-0.271702.102501.35850K562SF3B4
STXBP3ENSG00000116266.6396.86930566.55680-0.513603.449602.27080K562SRFBP1
STXBP3ENSG00000116266.61552.425401247.739600.315102.010801.39680K562SRSF1
STXBP3ENSG00000116266.6478.69230669.49060-0.484003.616802.39040K562SRSF4
STXBP3ENSG00000116266.6973.975801218.18880-0.322802.714301.90540K562TIA1
STXBP3ENSG00000116266.6476.37240669.34730-0.490703.530702.43680K562TRIM56
STXBP3ENSG00000116266.6990.45270755.118900.391302.795301.77120K562UCHL5
STXBP3ENSG00000116266.61159.97610989.187900.229702.031701.41010K562UPF1
STXBP3ENSG00000116266.62170.056101773.813200.290802.370701.58100K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for STXBP3 is not available on ENCORE database.





1 RBPs can affect the splicing of STXBP3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESTXBP3ENSG00000116266.6chr1+109342841109342927109340766109340859109350022109350171-0.085000.000000.00002excludedK562AQR
A3SSSTXBP3ENSG00000116266.6chr1+1093392011093393481093392411093393481093388551093389940.052000.000170.00143longerK562AQR
A3SSSTXBP3ENSG00000116266.6chr1+109301131109301210109301138109301210109299311109299388-0.054000.006400.03588shorterK562AQR
MXESTXBP3ENSG00000116266.6chr1+1093406991093408591093428411093429271093392411093393481093500221093501710.083000.000000.000021includedK562AQR
MXESTXBP3ENSG00000116266.6chr1+109325043109325139109325249109325328109321866109322032109336203109336269-0.163000.011700.071922includedK562AQR
MXESTXBP3ENSG00000116266.6chr1+109325043109325139109325226109325328109321866109322032109336203109336269-0.162000.012800.077392includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for STXBP3 is not avaliable on ENCORE database.