SNX8

General Information

Gene Name       : SNX8
Gene ID             : ENSG00000106266.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNX8)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNX8ENSG00000106266.1012.2554.3133.28ENCSR000AEF
HepG2SNX8ENSG00000106266.1053.4924.8439.16ENCSR985KAT
K562SNX8ENSG00000106266.1025.5522.4323.99ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNX8 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNX8 RNA is bound by 15 proteins.  







eCLIP assay for SNX8 is not avaliable on ENCORE database.





15 proteins are bound to SNX8 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr722918912291977-3'-UTR,intron-Distal3.930363.45716HepG2AKAP1
chr722921782292285-3'-UTR,intron-Distal5.4912820.78923K562FAM120A
chr722922222292273-3'-UTR,intron-Distal4.674354.49655K562CSTF2T
chr722921212292182-3'-UTR,intron-Distal4.2286310.88945K562UPF1
chr722915782291643-3'-UTR,intron-Distal4.100613.96304K562CSTF2T
chr722942682294369-3'-UTR,intron-Distal3.620524.93514HepG2UPF1
chr722945202294617-3'-UTR,intron-Distal,intron-Proximal4.899047.45692HepG2UPF1
chr722937522293802-3'-UTR,intron-Distal3.790703.48722HepG2PRPF4
chr722946492294762-3'-UTR,CDS,intron-Distal,intron-Proximal4.127123.79199HepG2PPIG
chr722943112294440-3'-UTR,intron-Distal3.569914.25110K562CSTF2T
chr722921122292186-3'-UTR,intron-Distal3.005703.39789K562GTF2F1
chr722921252292176-3'-UTR,intron-Distal4.705613.92796K562AKAP1
chr722921822292286-3'-UTR,intron-Distal6.4218141.25172K562UPF1
chr722941582294224-3'-UTR,intron-Distal3.365874.02206K562CSTF2T
chr722919112291987-3'-UTR,intron-Distal3.552963.48322HepG2UPF1
chr722941092294150-3'-UTR,intron-Distal4.065623.16310HepG2CSTF2T
chr722918972291961-3'-UTR,intron-Distal3.736405.60571HepG2FAM120A
chr722919072291972-3'-UTR,intron-Distal5.111798.29600HepG2CSTF2T
chr722922212292282-3'-UTR,intron-Distal4.626265.23978HepG2PRPF4
chr722921202292221-3'-UTR,intron-Distal5.3756610.14244HepG2PRPF4
chr722915662291644-3'-UTR,intron-Distal4.290554.43799HepG2CSTF2T
chr722940802294158-3'-UTR,intron-Distal4.369325.01722K562CSTF2T
chr722921212292201-3'-UTR,intron-Distal4.579315.41529HepG2CSTF2T
chr722922092292289-3'-UTR,intron-Distal4.866368.27393K562AKAP8L
chr722920932292178-3'-UTR,intron-Distal4.170346.42251K562FAM120A
chr722917322291773-3'-UTR,intron-Distal3.836065.60571HepG2FAM120A
chr722919112291964-3'-UTR,intron-Distal4.255164.55101HepG2PRPF4
chr722918912291990-3'-UTR,intron-Distal4.355129.60486K562AKAP1
chr722922142292285-3'-UTR,intron-Distal5.3685016.49270HepG2FAM120A
chr722917412291763-3'-UTR,intron-Distal3.463623.66308K562UPF1
chr722941452294223-3'-UTR,intron-Distal4.322633.19482K562AKAP8L
chr722922212292288-3'-UTR,intron-Distal3.565004.93514HepG2UPF1
chr722941782294229-3'-UTR,intron-Distal4.254963.75888HepG2FAM120A
chr722931032293205-3'-UTR,intron-Distal3.917335.80161HepG2CSTF2T
chr722937442293818-3'-UTR,intron-Distal3.607423.85730K562AKAP1
chr722922092292280-3'-UTR,intron-Distal3.883558.35056K562GTF2F1
chr722917402291782-3'-UTR,intron-Distal4.025853.40229HepG2CSTF2T
chr722940822294216-3'-UTR,intron-Distal4.6070620.42065K562UPF1
chr722974282297484-CDS,intron-Distal,intron-Proximal4.972875.58150K562SF3B4
chr723040912304155-CDS,intron-Distal,intron-Proximal4.180395.63851K562SF3B4
chr723040132304069-CDS,intron-Distal,intron-Proximal3.780863.15006K562RBM15
chr723936552393727-intron-Distal3.949053.18939HepG2RBFOX2
chr722989222298996-intron-Distal3.116713.50009K562CSTF2T
chr722988912298963-intron-Distal4.283014.46290K562EWSR1
chr723537212353792-intron-Distal3.837123.53896K562NONO
chr722987132298833-intron-Distal4.840937.10563K562NONO
chr723723382372396-intron-Distal5.082345.39854K562PTBP1
chr722984722298573-intron-Distal3.723706.09306K562NONO
chr723936192393705-intron-Distal4.148104.36077HepG2NCBP2
chr723723242372461-intron-Distal5.2233518.61407HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNX8 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNX8 is not available on ENCORE database.

  • 71 RBPs can affect the levels of SNX8.  








The Knockdown/knockout RNA-Seq assay for SNX8 is not available on ENCORE database.





71 RBPs can affect the gene expression of SNX8 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNX8ENSG00000106266.4849.60520557.742900.607101.842501.39870HepG2AKAP1
SNX8ENSG00000106266.4192.39470296.17260-0.622403.316302.66790HepG2BOP1
SNX8ENSG00000106266.4668.68590425.347700.652608.073707.08390HepG2CELF1
SNX8ENSG00000106266.4594.55830457.307800.378602.214101.53960HepG2DAZAP1
SNX8ENSG00000106266.4158.72670307.03230-0.951807.127305.67280HepG2DDX24
SNX8ENSG00000106266.4184.81890363.06460-0.974102.458301.72490HepG2DDX55
SNX8ENSG00000106266.4193.84500308.76310-0.671602.490001.56310HepG2DDX59
SNX8ENSG00000106266.4322.04690229.932900.486003.359902.65410HepG2DNAJC2
SNX8ENSG00000106266.4173.13060288.89780-0.738703.741802.44260HepG2AGO1
SNX8ENSG00000106266.4204.04030296.21780-0.537802.875201.77480HepG2EIF3G
SNX8ENSG00000106266.4753.93530487.286400.629602.642602.01720HepG2EIF4A3
SNX8ENSG00000106266.4313.82590430.76020-0.456902.678001.60290HepG2ESF1
SNX8ENSG00000106266.4615.06360966.32140-0.651804.829704.07520HepG2ETF1
SNX8ENSG00000106266.4183.59030298.88780-0.703104.316502.93530HepG2FASTKD2
SNX8ENSG00000106266.4114.75870272.37170-1.247004.599203.29710HepG2FTO
SNX8ENSG00000106266.4806.07770492.126900.711803.289202.53790HepG2FXR1
SNX8ENSG00000106266.4211.01390308.21190-0.546602.408201.80680HepG2GPKOW
SNX8ENSG00000106266.4281.08710420.30090-0.580404.339803.21380HepG2HNRNPA2B1
SNX8ENSG00000106266.4316.57540206.144600.618802.983301.40850HepG2HNRNPD
SNX8ENSG00000106266.4350.19350258.808500.436202.354701.79190HepG2HNRNPU
SNX8ENSG00000106266.4802.10090463.699300.790504.360303.53000HepG2IGF2BP2
SNX8ENSG00000106266.4365.97610264.365900.469103.495702.67970HepG2ILF2
SNX8ENSG00000106266.4718.29520486.190300.563003.479002.54810HepG2LARP4
SNX8ENSG00000106266.4814.13050492.300800.725603.150802.45120HepG2MAGOH
SNX8ENSG00000106266.41357.90820494.978901.4558022.7258021.06030HepG2MATR3
SNX8ENSG00000106266.4682.59010453.467900.589906.397305.24110HepG2NOL12
SNX8ENSG00000106266.4384.93490217.570300.823004.050502.96300HepG2PABPC1
SNX8ENSG00000106266.4375.36960230.838100.701304.002203.13180HepG2PPIL4
SNX8ENSG00000106266.4625.27390519.935100.266101.919901.44820HepG2PTBP1
SNX8ENSG00000106266.4645.32420432.887400.575905.082804.30490HepG2PUF60
SNX8ENSG00000106266.4558.44520325.221800.779902.175501.30600HepG2RBM27
SNX8ENSG00000106266.4571.60520306.177500.900603.450702.24720HepG2RPS5
SNX8ENSG00000106266.4352.25140230.485800.611804.801703.99290HepG2SAFB2
SNX8ENSG00000106266.4569.89190415.101800.457104.528503.66560HepG2SLBP
SNX8ENSG00000106266.4403.99640268.794500.587705.199204.36460HepG2SMN1
SNX8ENSG00000106266.4163.71770323.93380-0.984505.049803.98430HepG2SNRNP70
SNX8ENSG00000106266.4782.90220427.430900.8730015.2733013.97110HepG2SRSF5
SNX8ENSG00000106266.4528.46190415.797800.345802.166601.54220HepG2SRSF7
SNX8ENSG00000106266.4567.73460791.90830-0.480103.698603.12480HepG2SSB
SNX8ENSG00000106266.4298.10880208.106300.518402.322401.32980HepG2STIP1
SNX8ENSG00000106266.4701.31860486.091600.528706.400305.52330HepG2SUCLG1
SNX8ENSG00000106266.4193.03120361.33960-0.904502.302501.67830HepG2SUPV3L1
SNX8ENSG00000106266.4273.76030507.90600-0.8916010.065409.10290HepG2TAF15
SNX8ENSG00000106266.4440.30390251.515200.807807.665206.90910HepG2TIAL1
SNX8ENSG00000106266.4392.91600253.726600.630804.121003.46050HepG2TRIM56
SNX8ENSG00000106266.4572.37730422.936700.436403.104902.17470HepG2TUFM
SNX8ENSG00000106266.4434.79170213.395901.026706.973605.75950HepG2UCHL5
SNX8ENSG00000106266.4521.21400417.185500.321102.099801.56400HepG2UTP3
SNX8ENSG00000106266.4321.34150214.223300.584902.768101.67080HepG2XPO5
SNX8ENSG00000106266.4213.75730337.95990-0.660905.311104.43050HepG2ZC3H8
SNX8ENSG00000106266.4705.05550565.403700.318401.922201.37360K562AKAP8L
SNX8ENSG00000106266.4548.95170406.178700.434503.301402.25030K562BCLAF1
SNX8ENSG00000106266.4570.25900316.869200.847602.789301.87240K562EFTUD2
SNX8ENSG00000106266.4494.07300316.086600.644305.005503.84100K562FIP1L1
SNX8ENSG00000106266.4213.36100304.05380-0.511002.363701.33320K562FKBP4
SNX8ENSG00000106266.4607.69970478.787700.343902.531101.94680K562FXR1
SNX8ENSG00000106266.425.59710129.33300-2.3370012.5220010.79130K562G3BP2
SNX8ENSG00000106266.4456.53240292.911300.640203.732702.47210K562IGF2BP2
SNX8ENSG00000106266.4527.58600307.680400.777907.338205.94260K562MAGOH
SNX8ENSG00000106266.4416.51050307.032200.439902.754401.83270K562MATR3
SNX8ENSG00000106266.4432.95300273.730500.661404.622603.35290K562PCBP2
SNX8ENSG00000106266.4558.90170417.399500.421102.917202.09380K562POLR2G
SNX8ENSG00000106266.4488.88720358.838100.446102.738701.92170K562PPIG
SNX8ENSG00000106266.4594.89560298.942500.9927013.3168011.91340K562PTBP1
SNX8ENSG00000106266.4737.821601018.89100-0.465704.549303.15570K562PUM1
SNX8ENSG00000106266.4462.03480286.564000.689005.597604.35190K562RBM22
SNX8ENSG00000106266.4401.49200279.411200.522902.629801.30580K562RBM34
SNX8ENSG00000106266.4222.76670134.420000.728704.192703.13560K562SF3B4
SNX8ENSG00000106266.4511.94880293.081100.804602.635101.94340K562SRSF1
SNX8ENSG00000106266.4297.15010178.050100.738804.168602.83750K562SRSF4
SNX8ENSG00000106266.4401.08080276.836900.534803.351002.17670K562SRSF5
SNX8ENSG00000106266.452.56890126.95030-1.272004.493302.47460K562TAF15
SNX8ENSG00000106266.4647.82710296.579001.127105.147804.16780K562TARDBP
SNX8ENSG00000106266.476.58930134.75200-0.815103.130701.42570K562TBRG4
SNX8ENSG00000106266.4553.44320286.094000.9518011.063809.30770K562TIA1
SNX8ENSG00000106266.4434.71670301.794100.526402.750401.81710K562TIAL1
SNX8ENSG00000106266.4445.57740280.833700.665904.849403.32630K562TRA2A
SNX8ENSG00000106266.475.38460125.29420-0.733002.297701.31330K562U2AF1
SNX8ENSG00000106266.467.53520129.42510-0.938403.979803.01930K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNX8 is not available on ENCORE database.





1 RBPs can affect the splicing of SNX8 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSSNX8ENSG00000106266.4chr7-2297300229745622973002297438230286423030960.113000.000090.00077longerK562AQR
A3SSSNX8ENSG00000106266.4chr7-2304000230424823040002304093230919323092740.051000.005270.03026longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNX8 is not avaliable on ENCORE database.