SNHG10

General Information

Gene Name       : SNHG10
Gene ID             : ENSG00000247092.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNHG10)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNHG10ENSG00000247092.65.948.137.04ENCSR000AEF
HepG2SNHG10ENSG00000247092.618.8218.1418.48ENCSR985KAT
K562SNHG10ENSG00000247092.68.707.538.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNHG10 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNHG10 RNA is bound by 14 proteins.  







eCLIP assay for SNHG10 is not avaliable on ENCORE database.





14 proteins are bound to SNHG10 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr149599930795999384-intron-Distal4.324313.20027K562ZNF622
chr149599969095999699-intron-Distal7.06410400.00000HepG2NOLC1
chr149599976695999769-intron-Distal5.40748400.00000HepG2NOLC1
chr149599969895999711-intron-Distal6.71874400.00000HepG2DKC1
chr149600077396000888-intron-Distal3.318046.60481K562DGCR8
chr149599990995999917-intron-Distal3.4544419.77560K562SMNDC1
chr149599984695999909-intron-Distal4.34710400.00000K562SMNDC1
chr149599971495999716-intron-Distal6.00360400.00000HepG2NOLC1
chr149599916795999240-intron-Distal,intron-Proximal5.1488110.80367HepG2CSTF2
chr149599988595999898-intron-Distal4.74236400.00000HepG2SF3A3
chr149599971095999736-intron-Distal4.50170400.00000HepG2PTBP1
chr149599991795999921-intron-Distal3.1064616.08509K562SMNDC1
chr149599970895999710-intron-Distal4.52192400.00000HepG2PTBP1
chr149599975795999763-intron-Distal3.79386400.00000HepG2PTBP1
chr149599915095999240-intron-Distal,intron-Proximal3.919323.43867K562CSTF2T
chr149599978595999789-intron-Distal3.90024400.00000K562PTBP1
chr149599973695999743-intron-Distal4.23084400.00000HepG2PTBP1
chr149599970795999714-intron-Distal5.54987400.00000HepG2SMNDC1
chr149599974295999749-intron-Distal4.24487400.00000K562PTBP1
chr149599989895999908-intron-Distal4.1114481.45586K562PTBP1
chr149599986395999898-intron-Distal4.99582400.00000HepG2NOLC1
chr149599995795999963-intron-Distal3.3803546.76387HepG2SF3A3
chr149599983395999842-intron-Distal6.50434400.00000HepG2DKC1
chr149599974295999757-intron-Distal4.26013400.00000HepG2SMNDC1
chr149599992495999963-intron-Distal6.54692400.00000HepG2DKC1
chr149599970295999704-intron-Distal4.31014400.00000HepG2PTBP1
chr149599984995999860-intron-Distal4.35491400.00000K562PTBP1
chr149599979995999810-intron-Distal3.86968400.00000HepG2SMNDC1
chr149599991295999918-intron-Distal3.0255670.47121HepG2PTBP1
chr149599970795999714-intron-Distal4.74689400.00000K562PTBP1
chr149599981595999817-intron-Distal5.67326400.00000HepG2DKC1
chr149599977095999778-intron-Distal3.70060400.00000HepG2PTBP1
chr149600040796000517-intron-Distal3.170444.56348K562HNRNPC
chr149599968995999694-intron-Distal8.78543400.00000HepG2DKC1
chr149599969295999707-intron-Distal3.8459345.68907HepG2UPF1
chr149599993095999937-intron-Distal4.35885400.00000HepG2NOLC1
chr149599981095999835-intron-Distal3.21727400.00000HepG2PTBP1
chr149599991695999920-intron-Distal6.08319400.00000HepG2DKC1
chr149599988795999898-intron-Distal4.53451400.00000HepG2SMNDC1
chr149599973295999742-intron-Distal4.10457400.00000K562PTBP1
chr149599976395999769-intron-Distal5.95812400.00000HepG2DKC1
chr149599992095999924-intron-Distal6.07398400.00000HepG2DKC1
chr149599970695999708-intron-Distal6.22803400.00000HepG2NOLC1
chr149599978595999789-intron-Distal5.18565400.00000HepG2DKC1
chr149599990095999912-intron-Distal6.15573400.00000HepG2DKC1
chr149599981795999833-intron-Distal5.79184400.00000HepG2DKC1
chr149599979095999810-intron-Distal3.18891400.00000HepG2PTBP1
chr149599988695999898-intron-Distal4.59878400.00000K562PTBP1
chr149599974395999757-intron-Distal5.54413400.00000HepG2NOLC1
chr149599977495999778-intron-Distal5.73366400.00000HepG2DKC1
chr149599980595999834-intron-Distal3.0570674.31309K562SMNDC1
chr149599974395999759-intron-Distal4.92688400.00000HepG2SF3A3
chr149599991295999918-intron-Distal3.4062837.34652HepG2SMNDC1
chr149599987195999888-intron-Distal6.29693400.00000HepG2DKC1
chr149599968895999693-intron-Distal5.2078535.59412K562SMNDC1
chr149599934995999399-intron-Distal3.220673.42396HepG2U2AF2
chr149599991295999916-intron-Distal6.08045400.00000HepG2DKC1
chr149599971695999720-intron-Distal5.83607400.00000HepG2NOLC1
chr149599981795999833-intron-Distal4.99171400.00000HepG2NOLC1
chr149599971595999743-intron-Distal5.36212400.00000HepG2SF3A3
chr149599976895999780-intron-Distal4.48276400.00000HepG2SMNDC1
chr149599985795999885-intron-Distal4.86289400.00000HepG2SF3A3
chr149599976995999774-intron-Distal5.79770400.00000HepG2DKC1
chr149599978995999810-intron-Distal5.61573400.00000HepG2DKC1
chr149599972295999732-intron-Distal4.16827400.00000K562PTBP1
chr149599978995999809-intron-Distal4.36528400.00000K562PTBP1
chr149599974995999757-intron-Distal4.37123400.00000K562PTBP1
chr149599970295999706-intron-Distal6.04994400.00000HepG2NOLC1
chr149599976495999770-intron-Distal3.66125400.00000HepG2PTBP1
chr149599970095999702-intron-Distal4.30797400.00000HepG2PTBP1
chr149599972495999743-intron-Distal5.78539400.00000HepG2NOLC1
chr149599993195999932-intron-Distal4.28873400.00000HepG2SF3A3
chr149599971195999715-intron-Distal6.70038400.00000HepG2DKC1
chr149599986095999863-intron-Distal5.27815400.00000HepG2NOLC1
chr149599977895999784-intron-Distal3.20592400.00000HepG2PTBP1
chr149599981095999836-intron-Distal3.98633400.00000HepG2SMNDC1
chr149599978595999791-intron-Distal4.05015400.00000HepG2SMNDC1
chr149599983595999846-intron-Distal3.39785400.00000HepG2PTBP1
chr149599975895999760-intron-Distal5.35391400.00000HepG2NOLC1
chr149599976495999769-intron-Distal5.04109400.00000HepG2SF3A3
chr149599989895999914-intron-Distal4.89131400.00000HepG2SF3A3
chr149599969695999701-intron-Distal4.6378540.87387K562SMNDC1
chr149599984295999849-intron-Distal6.54581400.00000HepG2DKC1
chr149599992595999959-intron-Distal4.85182400.00000K562PTBP1
chr149599968995999715-intron-Distal6.01004400.00000HepG2SF3A3
chr149599988895999900-intron-Distal6.19067400.00000HepG2DKC1
chr149599986995999900-intron-Distal3.74788400.00000HepG2PTBP1
chr149599977895999781-intron-Distal5.53519400.00000HepG2DKC1
chr149599984695999863-intron-Distal3.64106400.00000HepG2PTBP1
chr149599985595999864-intron-Distal6.15198400.00000HepG2DKC1
chr149599978695999790-intron-Distal4.38881400.00000HepG2NOLC1
chr149599968995999693-intron-Distal7.79358400.00000HepG2SMNDC1
chr149599973795999741-intron-Distal6.25779400.00000HepG2DKC1
chr149599971595999720-intron-Distal6.51021400.00000HepG2DKC1
chr149599969095999744-intron-Distal4.38517400.00000HepG2LARP7
chr149599969295999694-intron-Distal7.8289395.92112K562PTBP1
chr149599972395999731-intron-Distal4.08742400.00000HepG2SMNDC1
chr149599975395999757-intron-Distal3.87533400.00000HepG2PTBP1
chr149599979195999799-intron-Distal3.92455400.00000HepG2SMNDC1
chr149599969595999698-intron-Distal7.89842400.00000HepG2DKC1
chr149599974295999749-intron-Distal6.18033400.00000HepG2DKC1
chr149599977795999783-intron-Distal4.09649400.00000K562PTBP1
chr149599991895999920-intron-Distal3.7336975.39921HepG2SMNDC1
chr149599976495999775-intron-Distal4.44942400.00000K562PTBP1
chr149599994095999957-intron-Distal4.06951400.00000HepG2SF3A3
chr149599975795999763-intron-Distal6.05253400.00000HepG2DKC1
chr149599981095999815-intron-Distal5.61018400.00000HepG2DKC1
chr149599978995999833-intron-Distal4.32853400.00000HepG2SF3A3
chr149599977895999786-intron-Distal4.72758400.00000HepG2NOLC1
chr149599995695999963-intron-Distal3.20064400.00000HepG2PTBP1
chr149599983395999836-intron-Distal4.1995473.33314K562PTBP1
chr149600015496000180-intron-Distal4.170319.46716K562DGCR8
chr149599971395999714-intron-Distal6.45509400.00000HepG2NOLC1
chr149599989895999912-intron-Distal4.54856400.00000HepG2SMNDC1
chr149599970195999719-intron-Distal4.21680400.00000K562SMNDC1
chr149599986395999869-intron-Distal3.74644400.00000HepG2PTBP1
chr149599981095999817-intron-Distal4.41416400.00000K562PTBP1
chr149599974495999749-intron-Distal3.70595400.00000HepG2PTBP1
chr149599992095999923-intron-Distal3.7552776.31038HepG2SMNDC1
chr149599975195999757-intron-Distal6.09264400.00000HepG2DKC1
chr149600014296000154-intron-Distal4.098119.46716K562DGCR8
chr149599973195999742-intron-Distal3.99089400.00000HepG2SMNDC1
chr149599992395999955-intron-Distal3.46414400.00000HepG2PTBP1
chr149599979095999811-intron-Distal4.87388400.00000HepG2NOLC1
chr149599973195999736-intron-Distal6.21527400.00000HepG2DKC1
chr149599975795999768-intron-Distal4.47373400.00000HepG2SMNDC1
chr149599971495999723-intron-Distal4.75564400.00000HepG2SMNDC1
chr149599975795999764-intron-Distal4.56478400.00000K562PTBP1
chr149599972095999731-intron-Distal6.35903400.00000HepG2DKC1
chr149599987295999885-intron-Distal4.38908400.00000HepG2SMNDC1
chr149599974995999751-intron-Distal6.10570400.00000HepG2DKC1
chr149599984995999855-intron-Distal6.38471400.00000HepG2DKC1
chr149599986495999871-intron-Distal6.31923400.00000HepG2DKC1
chr149599969095999725-intron-Distal3.717809.91840K562ZC3H8
chr149599974995999753-intron-Distal3.60677400.00000HepG2PTBP1
chr149599992595999953-intron-Distal4.36463400.00000HepG2SMNDC1
chr149599990095999908-intron-Distal3.53929400.00000HepG2PTBP1
chr149599971495999722-intron-Distal4.43316400.00000K562PTBP1
chr149599986095999886-intron-Distal4.69496400.00000K562PTBP1
chr149599992595999953-intron-Distal3.7058070.40193K562SMNDC1
chr149599977495999778-intron-Distal5.02231400.00000HepG2NOLC1
chr149599975995999764-intron-Distal4.93113400.00000HepG2SF3A3
chr149599981795999833-intron-Distal4.59269400.00000K562PTBP1
chr149599972095999724-intron-Distal5.95078400.00000HepG2NOLC1
chr149599976395999764-intron-Distal3.92808400.00000HepG2PTBP1
chr149599969595999707-intron-Distal4.72435400.00000K562PTBP1
chr149599970495999708-intron-Distal4.51671400.00000HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNHG10 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNHG10 is not available on ENCORE database.

  • 59 RBPs can affect the levels of SNHG10.  








The Knockdown/knockout RNA-Seq assay for SNHG10 is not available on ENCORE database.





59 RBPs can affect the gene expression of SNHG10 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNHG10ENSG00000247092.282.17840152.41970-0.891204.496703.75790HepG2ACO1
SNHG10ENSG00000247092.293.68550153.13660-0.708903.090902.28530HepG2AKAP8L
SNHG10ENSG00000247092.279.39790141.11350-0.829702.930502.12300HepG2ASCC1
SNHG10ENSG00000247092.298.49730203.62420-1.047806.747405.74900HepG2AUH
SNHG10ENSG00000247092.277.29070123.56460-0.676902.153401.46740HepG2CALR
SNHG10ENSG00000247092.268.79420134.06950-0.962603.547002.67880HepG2CIRBP
SNHG10ENSG00000247092.271.64210116.37580-0.699902.285301.36190HepG2YBX3
SNHG10ENSG00000247092.2109.37870161.53800-0.562502.198601.61570HepG2CELF1
SNHG10ENSG00000247092.2105.15130163.36550-0.635602.139601.58310HepG2DDX3X
SNHG10ENSG00000247092.232.6322071.71830-1.136002.532001.59830HepG2DDX59
SNHG10ENSG00000247092.245.35380140.36420-1.629907.554206.57870HepG2DDX6
SNHG10ENSG00000247092.273.36830114.26930-0.639202.028201.41630HepG2DNAJC21
SNHG10ENSG00000247092.275.30680145.17040-0.946903.088102.36440HepG2EIF4B
SNHG10ENSG00000247092.2160.70630233.81310-0.540902.857402.24800HepG2ETF1
SNHG10ENSG00000247092.293.8076039.047101.264404.375401.84110HepG2EXOSC5
SNHG10ENSG00000247092.2133.3821071.638000.896703.328201.41520HepG2EXOSC9
SNHG10ENSG00000247092.223.9054063.27240-1.404202.332901.40720HepG2FTO
SNHG10ENSG00000247092.272.20030139.54280-0.950603.691702.92670HepG2G3BP1
SNHG10ENSG00000247092.257.62030115.70390-1.005803.205302.10530HepG2GNB2L1
SNHG10ENSG00000247092.273.58730145.51770-0.983705.291503.98580HepG2HDGF
SNHG10ENSG00000247092.293.22940141.83410-0.605301.873701.30820HepG2IGF2BP2
SNHG10ENSG00000247092.2109.90020195.66510-0.832203.486302.55400HepG2LARP4
SNHG10ENSG00000247092.2320.95940154.898501.051007.110206.11770HepG2NCBP2
SNHG10ENSG00000247092.240.0957085.56810-1.093602.622601.55970HepG2NONO
SNHG10ENSG00000247092.289.07410146.10970-0.714002.908502.28960HepG2PCBP1
SNHG10ENSG00000247092.290.18440148.67110-0.721202.744002.19820HepG2PTBP1
SNHG10ENSG00000247092.295.03710164.41880-0.790803.348902.70200HepG2PUF60
SNHG10ENSG00000247092.2102.84590174.40900-0.762003.394802.65420HepG2PUM2
SNHG10ENSG00000247092.282.43770161.01650-0.965804.486703.71830HepG2QKI
SNHG10ENSG00000247092.287.16350195.41920-1.164807.336306.58690HepG2RBM22
SNHG10ENSG00000247092.274.63920146.13210-0.969304.185603.37190HepG2RBM25
SNHG10ENSG00000247092.2244.90630136.648600.841704.637503.33310HepG2RBM27
SNHG10ENSG00000247092.241.1572089.78660-1.125403.566302.87780HepG2RPS19
SNHG10ENSG00000247092.270.70760148.95780-1.075004.069203.24440HepG2SF3A3
SNHG10ENSG00000247092.293.50120220.70950-1.239109.399108.62570HepG2SRFBP1
SNHG10ENSG00000247092.2275.46130161.564000.769604.867504.28500HepG2SRSF1
SNHG10ENSG00000247092.284.37810162.33540-0.944004.756703.97310HepG2SRSF5
SNHG10ENSG00000247092.241.92310131.44030-1.648609.525408.60870HepG2SRSF9
SNHG10ENSG00000247092.2113.93880184.62370-0.696303.354502.68280HepG2SUCLG1
SNHG10ENSG00000247092.266.41380111.55950-0.748302.644601.72350HepG2SUPT6H
SNHG10ENSG00000247092.234.6855092.75460-1.419104.179103.37230HepG2SUPV3L1
SNHG10ENSG00000247092.279.20550133.43770-0.752502.987802.12240HepG2TIA1
SNHG10ENSG00000247092.271.61160123.85960-0.790402.768702.26760HepG2TIAL1
SNHG10ENSG00000247092.275.28180124.97260-0.731202.780402.21530HepG2TRIM56
SNHG10ENSG00000247092.257.07410141.34180-1.308305.541304.66910HepG2U2AF1
SNHG10ENSG00000247092.298.55640170.01470-0.786602.477701.68880HepG2UBE2L3
SNHG10ENSG00000247092.2131.3395054.791501.261205.814704.70430HepG2UCHL5
SNHG10ENSG00000247092.267.09630132.10240-0.977404.494803.64040HepG2UPF1
SNHG10ENSG00000247092.2506.38570127.540301.9892038.6530036.77900HepG2UTP3
SNHG10ENSG00000247092.272.73880145.28790-0.998105.192704.50270HepG2ZNF622
SNHG10ENSG00000247092.2252.65500169.882800.572503.133602.53560K562AGGF1
SNHG10ENSG00000247092.2275.76330176.773400.641403.654702.90070K562AKAP8L
SNHG10ENSG00000247092.2502.55360265.738300.919207.091106.22230K562AQR
SNHG10ENSG00000247092.286.33560136.06270-0.656202.293301.54430K562EIF4A3
SNHG10ENSG00000247092.251.9262088.89160-0.775601.907001.33260K562G3BP2
SNHG10ENSG00000247092.2266.79050187.591600.508002.541701.75500K562KIF1C
SNHG10ENSG00000247092.2321.68820158.145901.024304.266102.96720K562PABPN1
SNHG10ENSG00000247092.2309.98660188.123100.720404.327102.31450K562PKM
SNHG10ENSG00000247092.2285.20120175.292100.702103.662403.04980K562PUS1
SNHG10ENSG00000247092.255.84140106.90740-0.937002.227101.49840K562RPS19
SNHG10ENSG00000247092.2189.01990128.412700.557702.195601.55740K562SRSF1
SNHG10ENSG00000247092.240.2316087.26280-1.117002.903101.39070K562TAF15
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNHG10 is not available on ENCORE database.





1 RBPs can affect the splicing of SNHG10 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNHG10ENSG00000247092.2chr14-960000299600008595998970959993989600092996001209-0.407000.000030.00159excludedK562RBM15

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNHG10 is not avaliable on ENCORE database.