SMIM11

General Information

Gene Name       : SMIM11
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SMIM11)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SMIM11 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SMIM11 RNA is bound by 7 proteins.  







eCLIP assay for SMIM11 is not avaliable on ENCORE database.





7 proteins are bound to SMIM11 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr213576139135761441+3'-UTR,intron-Distal7.3320126.61950K562PABPC4
chr213576099435761055+3'-UTR,intron-Distal4.969146.58593HepG2BCLAF1
chr213576092235760985+3'-UTR,intron-Distal,intron-Proximal4.428105.01312K562UCHL5
chr213576092035761019+3'-UTR,intron-Distal,intron-Proximal3.022404.14618K562ZNF622
chr213576106135761118+3'-UTR,intron-Distal5.090535.09993K562PUM2
chr213575178435751815+5'-UTR,CDS4.069334.12025K562YBX3
chr213575172635751809+5'-UTR,CDS,intron-Proximal3.945858.88978K562DDX3X
chr213574782035747867+5'-UTR,intron-Proximal5.3376210.09716K562DDX3X
chr213575174635751784+5'-UTR3.775903.02850K562YBX3
chr213575780135757821+CDS,intron-Distal3.281583.29348K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SMIM11 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SMIM11 is not available on ENCORE database.

  • 57 RBPs can affect the levels of SMIM11.  








The Knockdown/knockout RNA-Seq assay for SMIM11 is not available on ENCORE database.





57 RBPs can affect the gene expression of SMIM11 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SMIM11ENSG00000205670.6358.06880219.648900.704903.904802.79920HepG2ABCF1
SMIM11ENSG00000205670.6403.33500294.293000.454602.302101.59230HepG2CIRBP
SMIM11ENSG00000205670.6339.08160215.773400.652002.746001.98440HepG2CNOT7
SMIM11ENSG00000205670.6214.09700304.57650-0.508502.718602.08040HepG2CELF1
SMIM11ENSG00000205670.6245.85490179.240000.455802.482501.68870HepG2DDX19B
SMIM11ENSG00000205670.6264.21290189.998700.475602.037401.44460HepG2DDX21
SMIM11ENSG00000205670.6261.97750185.828500.495402.196601.39330HepG2DDX24
SMIM11ENSG00000205670.6282.19120179.314700.654102.474701.51500HepG2DDX5
SMIM11ENSG00000205670.6265.14790185.423100.515902.703202.03270HepG2DKC1
SMIM11ENSG00000205670.6123.20850182.46510-0.566502.423501.75990HepG2DNAJC21
SMIM11ENSG00000205670.6520.88150327.310000.670204.512303.69880HepG2EIF4A3
SMIM11ENSG00000205670.6469.90100343.303100.452803.268902.62410HepG2ETF1
SMIM11ENSG00000205670.6136.11450210.02900-0.625802.668001.89660HepG2FUBP3
SMIM11ENSG00000205670.6215.16670330.17740-0.617803.214502.47030HepG2FXR1
SMIM11ENSG00000205670.6263.28690178.232200.562802.275801.69240HepG2GPKOW
SMIM11ENSG00000205670.6258.67670184.212900.489701.963201.40730HepG2HNRNPA1
SMIM11ENSG00000205670.6414.49280286.857800.530902.470901.68820HepG2LARP4
SMIM11ENSG00000205670.6222.89100150.828300.563302.181901.51530HepG2NSUN2
SMIM11ENSG00000205670.6240.86840166.476500.532802.793002.01640HepG2PRPF4
SMIM11ENSG00000205670.6177.16520307.47880-0.795406.475805.70740HepG2PTBP1
SMIM11ENSG00000205670.6230.40220328.79840-0.513002.655701.99860HepG2PUM2
SMIM11ENSG00000205670.6227.71070333.01630-0.548403.235902.56810HepG2QKI
SMIM11ENSG00000205670.6208.39850302.23020-0.536302.861102.17760HepG2RBM25
SMIM11ENSG00000205670.6255.74190342.19800-0.420102.245101.74770HepG2NELFE
SMIM11ENSG00000205670.6216.10700318.70440-0.560503.483402.80130HepG2RECQL
SMIM11ENSG00000205670.6233.43050320.13280-0.455702.502101.93560HepG2SF3B4
SMIM11ENSG00000205670.6197.08900306.06080-0.635003.975703.24910HepG2SRSF5
SMIM11ENSG00000205670.6194.83330271.84300-0.480502.656402.11330HepG2SRSF9
SMIM11ENSG00000205670.6608.05550281.367001.1117019.1104018.02130HepG2SSB
SMIM11ENSG00000205670.6330.42400194.021100.768004.291303.47480HepG2SUPV3L1
SMIM11ENSG00000205670.6191.20010275.97620-0.529502.795401.95450HepG2TIA1
SMIM11ENSG00000205670.6302.26610197.800900.611703.782103.21710HepG2TIAL1
SMIM11ENSG00000205670.6304.27580189.778700.681003.853103.11600HepG2U2AF1
SMIM11ENSG00000205670.6265.49950177.715300.579002.321001.40760HepG2UPF2
SMIM11ENSG00000205670.6295.45650216.870200.446002.189401.64310HepG2UTP3
SMIM11ENSG00000205670.6345.29440190.991900.854205.619004.59730HepG2XRN2
SMIM11ENSG00000205670.6394.22320809.22980-1.0375012.6828011.55820K562AQR
SMIM11ENSG00000205670.6356.34750472.12850-0.405902.933601.94710K562BCLAF1
SMIM11ENSG00000205670.6218.42010326.61090-0.580502.945002.04560K562BOP1
SMIM11ENSG00000205670.6328.08250524.64810-0.677304.760002.82520K562BUD13
SMIM11ENSG00000205670.6409.84790714.24420-0.801303.160302.01370K562CNOT7
SMIM11ENSG00000205670.6210.48340354.36590-0.751504.902803.67180K562EFTUD2
SMIM11ENSG00000205670.6450.34860648.57480-0.526205.231704.28770K562EIF2S2
SMIM11ENSG00000205670.6496.08720375.178800.402902.458301.70700K562EIF3G
SMIM11ENSG00000205670.6235.35880368.62150-0.647304.465903.42340K562EIF4A3
SMIM11ENSG00000205670.6203.93850353.32970-0.792904.675203.56100K562FMR1
SMIM11ENSG00000205670.6207.49910331.60710-0.676403.954103.00970K562GPKOW
SMIM11ENSG00000205670.6221.99330435.84510-0.973305.133104.34280K562HNRNPC
SMIM11ENSG00000205670.6680.55430445.334900.611704.468303.26460K562HNRNPM
SMIM11ENSG00000205670.6171.96790283.10430-0.719203.210502.19650K562KRR1
SMIM11ENSG00000205670.6218.81370323.67800-0.564902.747801.87430K562METAP2
SMIM11ENSG00000205670.6480.66090598.72180-0.316902.581601.85750K562NSUN2
SMIM11ENSG00000205670.6418.68570686.17730-0.712704.222202.66770K562PABPC1
SMIM11ENSG00000205670.6319.86140537.33110-0.748405.663004.46640K562PCBP3
SMIM11ENSG00000205670.6243.63720412.16130-0.758506.207705.01280K562POLR2G
SMIM11ENSG00000205670.6431.66400590.72950-0.452603.986903.01700K562SF3A3
SMIM11ENSG00000205670.6180.92040315.30510-0.801404.460903.21140K562SF3B1
SMIM11ENSG00000205670.6277.66940471.06570-0.762607.459506.00960K562SF3B4
SMIM11ENSG00000205670.6388.58670531.12940-0.450802.780202.07190K562TARDBP
SMIM11ENSG00000205670.6369.84180512.32890-0.470203.366102.45150K562TIA1
SMIM11ENSG00000205670.6374.88880502.69860-0.423202.490001.46670K562TRA2A
SMIM11ENSG00000205670.6318.65790439.18080-0.462802.307501.32110K562U2AF1
SMIM11ENSG00000205670.6223.32400453.47700-1.0219011.523109.87340K562U2AF2
SMIM11ENSG00000205670.6658.63460911.68570-0.469104.178803.08060K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SMIM11 is not available on ENCORE database.





6 RBPs can affect the splicing of SMIM11 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESMIM11ENSG00000205670.6chr21+357577753575794235751726357518153577438835775075-0.053000.000340.00489excludedK562AQR
SESMIM11ENSG00000205670.6chr21+3577302635773164357720083577219735774388357750750.395000.000000.00000includedK562HNRNPL
MXESMIM11ENSG00000205670.6chr21+35757775357579423577200835772197357517263575181535774388357750750.170000.000000.000001includedHepG2SRSF1
MXESMIM11ENSG00000205670.6chr21+35757775357579423577200835772197357517263575181535774388357750750.056000.000020.000851includedK562SRSF1
MXESMIM11ENSG00000205670.6chr21+35757775357579423577200835772197357517263575181535774388357750750.104000.001680.022441includedHepG2SFPQ
MXESMIM11ENSG00000205670.6chr21+35757775357579423577200835772197357517263575181535774388357750750.105000.003430.048871includedHepG2HNRNPUL1
MXESMIM11ENSG00000205670.6chr21+3575777535757942357720083577219735751726357518153577438835775075-0.109000.000010.001242includedK562HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SMIM11 is not avaliable on ENCORE database.