SLC27A1

General Information

Gene Name       : SLC27A1
Gene ID             : ENSG00000130304.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC27A1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC27A1ENSG00000130304.160.220.460.34ENCSR000AEF
HepG2SLC27A1ENSG00000130304.165.861.963.91ENCSR985KAT
K562SLC27A1ENSG00000130304.160.950.730.84ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC27A1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC27A1 RNA is bound by 9 proteins.  







eCLIP assay for SLC27A1 is not avaliable on ENCORE database.





9 proteins are bound to SLC27A1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191761631317616355+3'-UTR4.882386.53456HepG2PCBP2
chr191761559017615674+3'-UTR4.674865.36996HepG2PCBP2
chr191761643917616522+3'-UTR4.481784.78313HepG2UPF1
chr191761635517616434+3'-UTR4.117235.96194HepG2PCBP2
chr191761571417615808+3'-UTR4.441603.07786HepG2UPF1
chr191759802417598108+3'-UTR,CDS,intron-Distal3.916164.13746HepG2PPIG
chr191758130317581469+5'-UTR,CDS,intron-Proximal3.011533.65693HepG2NCBP2
chr191759394917594028+intron-Distal4.309213.54185K562EIF4G2
chr191759569317595784+intron-Distal3.680365.85439HepG2CSTF2T
chr191758166217581743+intron-Distal3.890804.61345HepG2FAM120A
chr191759691717596961+intron-Distal4.556583.37054HepG2XPO5
chr191759561317595683+intron-Distal3.090083.04847HepG2CSTF2T
chr191759863817598745+intron-Distal4.584463.92947HepG2DDX59
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC27A1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC27A1 is not available on ENCORE database.

  • 70 RBPs can affect the levels of SLC27A1.  








The Knockdown/knockout RNA-Seq assay for SLC27A1 is not available on ENCORE database.





70 RBPs can affect the gene expression of SLC27A1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC27A1ENSG00000130304.12272.98820434.68000-0.671103.771002.67940HepG2ABCF1
SLC27A1ENSG00000130304.12581.39630392.592900.566403.399702.25540HepG2AKAP8
SLC27A1ENSG00000130304.12268.64100157.362300.771503.039402.05430HepG2BCCIP
SLC27A1ENSG00000130304.1272.04160201.61010-1.484709.772708.73530HepG2BOP1
SLC27A1ENSG00000130304.12203.59200340.15530-0.740506.610305.66330HepG2CKAP4
SLC27A1ENSG00000130304.12146.99090230.06320-0.646303.030302.07320HepG2DDX24
SLC27A1ENSG00000130304.12258.05690154.731500.737802.747801.97700HepG2DDX55
SLC27A1ENSG00000130304.12205.42520322.66760-0.651403.751102.58190HepG2DDX5
SLC27A1ENSG00000130304.121047.73030348.034001.5899024.7883023.21030HepG2DDX6
SLC27A1ENSG00000130304.12206.59800325.47620-0.655704.658703.82050HepG2DKC1
SLC27A1ENSG00000130304.12368.27860197.075800.9019010.299309.13860HepG2DNAJC2
SLC27A1ENSG00000130304.12142.58800221.93020-0.638303.055001.92500HepG2EIF3G
SLC27A1ENSG00000130304.12226.97650332.46080-0.550603.300902.38940HepG2EWSR1
SLC27A1ENSG00000130304.12451.20130324.806100.474103.877202.73440HepG2HDGF
SLC27A1ENSG00000130304.12410.49360255.495300.684003.400101.84240HepG2HNRNPAB
SLC27A1ENSG00000130304.12415.06470293.668400.499004.085303.27870HepG2HNRNPL
SLC27A1ENSG00000130304.12217.22160302.80810-0.479202.364001.48400HepG2HNRNPM
SLC27A1ENSG00000130304.12336.37930226.534300.570304.528503.60990HepG2ILF2
SLC27A1ENSG00000130304.12434.77330310.999200.483304.071202.84170HepG2KIF1C
SLC27A1ENSG00000130304.12230.40440355.19060-0.624403.944402.98290HepG2MSI2
SLC27A1ENSG00000130304.12454.68050319.682400.508103.829702.93170HepG2NOL12
SLC27A1ENSG00000130304.12366.53640142.142701.366507.371705.57770HepG2NONO
SLC27A1ENSG00000130304.12439.45590350.960000.324302.003001.47360HepG2PCBP1
SLC27A1ENSG00000130304.12422.80990197.803901.0958013.6052012.04790HepG2PPIL4
SLC27A1ENSG00000130304.12553.70660357.127800.632606.179905.42560HepG2PTBP1
SLC27A1ENSG00000130304.12206.73940305.16900-0.561802.966402.35270HepG2PUF60
SLC27A1ENSG00000130304.12429.83700323.955200.407903.098602.47980HepG2PUM1
SLC27A1ENSG00000130304.12283.66900487.24440-0.780407.652406.88990HepG2RBM22
SLC27A1ENSG00000130304.12568.97040351.011600.696703.158602.44310HepG2RBM25
SLC27A1ENSG00000130304.12275.45520397.43830-0.528903.501402.90810HepG2NELFE
SLC27A1ENSG00000130304.12139.07960230.37310-0.728103.341302.60080HepG2RPLP0
SLC27A1ENSG00000130304.12349.88760231.189700.597702.879301.78030HepG2RPS5
SLC27A1ENSG00000130304.12331.01230197.493600.745006.327705.41330HepG2SAFB2
SLC27A1ENSG00000130304.12187.69040348.11530-0.891205.318604.36620HepG2SF3A3
SLC27A1ENSG00000130304.12275.50930125.232301.137402.806801.34730HepG2SFPQ
SLC27A1ENSG00000130304.12413.92930292.619500.500304.022703.20050HepG2SLBP
SLC27A1ENSG00000130304.12287.56950115.353001.317804.251102.55200HepG2SNRNP200
SLC27A1ENSG00000130304.12132.60030220.49220-0.733602.593401.83720HepG2SNRNP70
SLC27A1ENSG00000130304.12251.91260550.30490-1.1273016.3765015.42510HepG2SRFBP1
SLC27A1ENSG00000130304.12110.03950388.08090-1.8183025.0884023.97600HepG2SRSF1
SLC27A1ENSG00000130304.12500.39860301.315800.731706.687005.77110HepG2SRSF5
SLC27A1ENSG00000130304.12265.03400477.76050-0.8501010.331209.46160HepG2SSB
SLC27A1ENSG00000130304.12415.45620270.368000.619702.566801.51160HepG2STIP1
SLC27A1ENSG00000130304.12257.20880348.84840-0.439702.347901.82450HepG2TAF15
SLC27A1ENSG00000130304.12171.03580418.35000-1.290406.622005.05060HepG2TBRG4
SLC27A1ENSG00000130304.12433.17460320.516400.434502.704101.87670HepG2TIA1
SLC27A1ENSG00000130304.12505.80670217.425801.2180019.8354018.50060HepG2TRIM56
SLC27A1ENSG00000130304.12132.92350375.44090-1.4980014.1423012.68730HepG2U2AF1
SLC27A1ENSG00000130304.12209.3104090.968701.202107.237806.00230HepG2UCHL5
SLC27A1ENSG00000130304.12214.76910298.06130-0.472802.572201.99140HepG2UTP3
SLC27A1ENSG00000130304.12193.67810329.39270-0.766106.560305.59840HepG2ZC3H8
SLC27A1ENSG00000130304.12234.58800339.53810-0.533403.835603.22010HepG2ZNF622
SLC27A1ENSG00000130304.1274.3953030.550501.283903.513902.62910K562CPSF6
SLC27A1ENSG00000130304.12110.7233064.855900.771502.777401.46780K562DDX6
SLC27A1ENSG00000130304.1283.6670039.421501.085603.287502.51480K562EIF2S2
SLC27A1ENSG00000130304.1283.8818040.776201.040503.210601.83390K562EXOSC5
SLC27A1ENSG00000130304.1291.9309031.096701.563703.824502.81240K562FMR1
SLC27A1ENSG00000130304.1231.5370069.50480-1.140102.954802.33240K562FXR1
SLC27A1ENSG00000130304.125.5241027.75150-2.328802.570701.89390K562G3BP2
SLC27A1ENSG00000130304.1274.2024030.201801.296703.138401.60800K562GEMIN5
SLC27A1ENSG00000130304.1270.2469029.163101.268203.221002.36630K562GPKOW
SLC27A1ENSG00000130304.1297.1673052.516600.887602.159401.48640K562GRSF1
SLC27A1ENSG00000130304.1276.7367036.983001.053002.589101.60700K562IGF2BP2
SLC27A1ENSG00000130304.1273.1492024.915001.553703.920802.79430K562KRR1
SLC27A1ENSG00000130304.1276.8371028.468601.432304.175603.08690K562METAP2
SLC27A1ENSG00000130304.12122.1613076.796900.669602.263901.58320K562NSUN2
SLC27A1ENSG00000130304.12120.0660048.856201.297104.962003.70320K562PSIP1
SLC27A1ENSG00000130304.1267.2805029.831901.173202.407401.64770K562RPS19
SLC27A1ENSG00000130304.12140.8287075.773400.894102.004001.30280K562SF3A3
SLC27A1ENSG00000130304.1274.3178036.095301.041802.808701.98390K562TIA1
SLC27A1ENSG00000130304.1270.8512035.448400.999002.511401.48080K562TRA2A
SLC27A1ENSG00000130304.12109.6344049.983401.133103.828402.68050K562TRIM56
SLC27A1ENSG00000130304.1269.6601030.011501.214702.744801.73010K562UCHL5
SLC27A1ENSG00000130304.12182.0654081.429101.160704.446003.55760K562UPF1
SLC27A1ENSG00000130304.1276.2468030.596201.317203.471402.06240K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC27A1 is not available on ENCORE database.





3 RBPs can affect the splicing of SLC27A1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RISLC27A1ENSG00000130304.12chr19+1759737117598144175973711759776617597982175981440.450000.000530.03683includedHepG2TBRG4
RISLC27A1ENSG00000130304.12chr19+1759737117598144175973711759776617597982175981440.299000.005860.08571includedHepG2IGF2BP3
RISLC27A1ENSG00000130304.12chr19+1759737117598144175973711759776617597982175981440.495000.001900.03334includedHepG2TIAL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLC27A1 is not avaliable on ENCORE database.