SDF2

General Information

Gene Name       : SDF2
Gene ID             : ENSG00000132581.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SDF2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SDF2ENSG00000132581.929.0925.6427.37ENCSR000AEF
HepG2SDF2ENSG00000132581.957.1556.4056.77ENCSR985KAT
K562SDF2ENSG00000132581.944.8845.0944.98ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SDF2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SDF2 RNA is bound by 9 proteins.  







eCLIP assay for SDF2 is not avaliable on ENCORE database.





9 proteins are bound to SDF2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr172697604726976154-3'-UTR,CDS,intron-Distal,intron-Proximal4.458178.05232HepG2SND1
chr172697588526975961-3'-UTR,intron-Distal,intron-Proximal4.034993.16434HepG2LARP4
chr172697624826976293-3'-UTR,CDS,intron-Distal3.228454.24433HepG2SND1
chr172697562726975735-3'-UTR,intron-Distal,intron-Proximal3.347744.08867HepG2LARP4
chr172697616426976248-3'-UTR,CDS,intron-Distal4.049898.06090HepG2SND1
chr172698908126989167-5'-UTR,intron-Distal,intron-Proximal3.511055.06399K562DDX3X
chr172698890826988995-5'-UTR,intron-Distal,intron-Proximal6.002078.42929K562FMR1
chr172698888326988998-5'-UTR,CDS,intron-Distal,intron-Proximal3.123716.92561K562CSTF2T
chr172698887126988998-5'-UTR,CDS,intron-Distal,intron-Proximal4.267303.69311HepG2CSTF2
chr172698232526982441-CDS,intron-Distal,intron-Proximal4.374949.78299HepG2SND1
chr172698230126982350-CDS,intron-Distal,intron-Proximal3.617053.20659K562SND1
chr172698880726988888-CDS,intron-Distal,intron-Proximal3.656327.12467HepG2DDX3X
chr172698872826988745-CDS,intron-Distal4.092275.05356HepG2PRPF8
chr172698874326988810-CDS,intron-Distal4.113153.77218HepG2SND1
chr172698862226988748-CDS,intron-Distal4.505125.35385HepG2PRPF4
chr172698860226988732-intron-Distal3.210123.04054K562GTF2F1
chr172698869426988728-intron-Distal4.458808.44604HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SDF2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SDF2 is not available on ENCORE database.

  • 45 RBPs can affect the levels of SDF2.  








The Knockdown/knockout RNA-Seq assay for SDF2 is not available on ENCORE database.





45 RBPs can affect the gene expression of SDF2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SDF2ENSG00000132581.5714.79920595.010900.264502.059701.52040HepG2ACO1
SDF2ENSG00000132581.51907.733001201.302200.667206.348205.57920HepG2AKAP1
SDF2ENSG00000132581.5788.88110597.781600.400104.011903.10020HepG2AKAP8L
SDF2ENSG00000132581.51378.79250923.385100.5783010.490909.29680HepG2AUH
SDF2ENSG00000132581.5666.50700362.690700.877809.520108.49530HepG2BOP1
SDF2ENSG00000132581.5467.00840338.118200.465803.165202.34520HepG2CALR
SDF2ENSG00000132581.5489.49990671.77970-0.456702.353501.46240HepG2CCAR1
SDF2ENSG00000132581.5762.07440594.851700.357303.646502.90090HepG2CKAP4
SDF2ENSG00000132581.5959.58110614.744800.642303.693902.80430HepG2CNOT7
SDF2ENSG00000132581.51676.089301150.716900.542504.966404.14880HepG2DDX3X
SDF2ENSG00000132581.51410.080401060.144900.411405.386304.59550HepG2ETF1
SDF2ENSG00000132581.5433.73880570.94850-0.396502.574601.81480HepG2FUBP3
SDF2ENSG00000132581.5743.392701043.57030-0.489303.874602.80960HepG2G3BP2
SDF2ENSG00000132581.5903.59190603.925400.581204.224602.96550HepG2GNB2L1
SDF2ENSG00000132581.5542.59960377.419400.523603.007602.34400HepG2GPKOW
SDF2ENSG00000132581.5791.49970995.44470-0.330802.117801.50110HepG2HNRNPK
SDF2ENSG00000132581.5748.745201004.94460-0.424602.304201.40120HepG2KHSRP
SDF2ENSG00000132581.5819.101001060.01310-0.372002.342701.73730HepG2MAGOH
SDF2ENSG00000132581.5618.93570424.079800.545403.879102.92470HepG2MSI2
SDF2ENSG00000132581.5714.260901023.22580-0.518607.290406.38140HepG2PCBP1
SDF2ENSG00000132581.5789.856201041.18020-0.398604.530403.86780HepG2PTBP1
SDF2ENSG00000132581.51193.69000987.055700.274102.503001.86470HepG2PUM2
SDF2ENSG00000132581.5847.291501127.60310-0.412304.246603.49680HepG2QKI
SDF2ENSG00000132581.51317.51920886.090100.572205.574204.90380HepG2RBM22
SDF2ENSG00000132581.5552.929801023.38020-0.8882013.4912012.06770HepG2RBM25
SDF2ENSG00000132581.5752.188301158.72560-0.623409.878608.97230HepG2NELFE
SDF2ENSG00000132581.5605.646601079.21010-0.8334016.3876015.09190HepG2RECQL
SDF2ENSG00000132581.5360.80610502.69710-0.478504.232603.46500HepG2SAFB2
SDF2ENSG00000132581.5739.668901083.98560-0.551408.014707.08980HepG2SF3B4
SDF2ENSG00000132581.5663.28400396.668100.741604.300103.31780HepG2SNRNP70
SDF2ENSG00000132581.51325.616201000.815300.405406.055105.39300HepG2SRFBP1
SDF2ENSG00000132581.5794.006201131.45340-0.511007.441206.75320HepG2SRSF1
SDF2ENSG00000132581.5808.12830622.247600.377001.959701.37590HepG2SUPV3L1
SDF2ENSG00000132581.5675.986701017.01420-0.589308.016107.14170HepG2TAF15
SDF2ENSG00000132581.5641.84160934.47650-0.541905.868204.66290HepG2TIA1
SDF2ENSG00000132581.5614.90670473.770200.376103.185302.44620HepG2UPF1
SDF2ENSG00000132581.5455.97520367.326400.311802.037801.44750HepG2ZC3H8
SDF2ENSG00000132581.52528.14460960.099401.3967032.9077031.08490K562AQR
SDF2ENSG00000132581.5156.66180232.38650-0.568902.717301.67580K562CCAR1
SDF2ENSG00000132581.5558.72370403.223500.470503.247902.36170K562EIF4A3
SDF2ENSG00000132581.5669.44850419.334600.674807.961707.00330K562FXR1
SDF2ENSG00000132581.51236.39540998.425100.308302.325901.63020K562GRSF1
SDF2ENSG00000132581.5534.68610354.073700.594503.880102.76520K562HNRNPM
SDF2ENSG00000132581.5656.53750488.678200.425902.948602.09760K562PPIG
SDF2ENSG00000132581.5787.30500511.483200.622105.309404.27000K562PRPF8
SDF2ENSG00000132581.5787.72990553.171500.509904.656903.74360K562SRSF1
SDF2ENSG00000132581.5390.34790524.14120-0.425202.352801.42240K562UCHL5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SDF2 is not available on ENCORE database.





14 RBPs can affect the splicing of SDF2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESDF2ENSG00000132581.5chr17-2698874326988957269823042698250126989063269891500.354000.000000.00000includedK562SRSF1
SESDF2ENSG00000132581.5chr17-269785032697859526976144269762942698230426982501-0.176000.000000.00000excludedK562SRSF1
SESDF2ENSG00000132581.5chr17-2697850326978595269761442697629426982304269825010.074000.000140.07808includedHepG2NKRF
SESDF2ENSG00000132581.5chr17-2697850326978560269758592697629426982304269825010.142000.000010.02400includedHepG2TROVE2
SESDF2ENSG00000132581.5chr17-2698874326988957269823042698250126989063269891500.145000.000080.00822includedHepG2AKAP1
SESDF2ENSG00000132581.5chr17-2698874326988957269823042698250126989063269891500.202000.000000.00007includedK562AQR
SESDF2ENSG00000132581.5chr17-269822612698250126975942269762942698874326988837-0.084000.003730.03657excludedK562AQR
SESDF2ENSG00000132581.5chr17-2698874326988957269823042698250126989063269891500.169000.000000.00088includedHepG2DDX3X
SESDF2ENSG00000132581.5chr17-2697850326978595269761442697629426982304269825010.071000.000650.08880includedHepG2TIA1
SESDF2ENSG00000132581.5chr17-2698874326988957269823042698250126989063269891500.120000.003530.04747includedK562PUS1
SESDF2ENSG00000132581.5chr17-2698874326988957269823042698250126989063269891500.149000.000360.02690includedHepG2NCBP2
SESDF2ENSG00000132581.5chr17-2698874326988957269823042698250126989063269891500.317000.000000.00000includedK562EFTUD2
SESDF2ENSG00000132581.5chr17-269887432698895726982304269825012698906326989150-0.167000.000040.02154excludedK562PPIL4
SESDF2ENSG00000132581.5chr17-2698874326988957269823042698250126989063269891500.176000.000030.00136includedHepG2SRSF1
SESDF2ENSG00000132581.5chr17-2697850326978595269761442697629426982304269825010.118000.001990.04600includedK562RBM15
SESDF2ENSG00000132581.5chr17-269785032697859526976144269762942698230426982501-0.076000.004060.07932excludedK562AGGF1
SESDF2ENSG00000132581.5chr17-2697850326978595269762632697629426982304269825010.102000.000170.04463includedHepG2EIF3D
A3SSSDF2ENSG00000132581.5chr17-2697850326978627269785032697859526982304269825350.180000.002580.01615longerK562AQR
A3SSSDF2ENSG00000132581.5chr17-2698230426982535269823042698250126988743269889570.209000.000000.00000longerK562AQR
MXESDF2ENSG00000132581.5chr17-26982304269825012698874326988957269753732697629426989063269891500.069000.000030.000951includedK562SRSF1
MXESDF2ENSG00000132581.5chr17-26982304269825012698874326988957269761442697633826989063269891500.094000.000010.000201includedK562AQR
MXESDF2ENSG00000132581.5chr17-26982261269825012698874326988957269759422697629426989063269891500.145000.000000.000001includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SDF2 is not avaliable on ENCORE database.