RP11-343C2.11

General Information

Gene Name : RP11-343C2.11
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-343C2.11)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-343C2.11 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-343C2.11 RNA is bound by 13 proteins.

eCLIP assay for RP11-343C2.11 is not avaliable on ENCORE database.

13 proteins are bound to RP11-343C2.11 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	69350158	69350235	+	CDS	3.71170	5.97027	HepG2	GRWD1
chr16	69352744	69352792	+	CDS	4.18782	3.79347	HepG2	GRWD1
chr16	69353301	69353324	+	CDS	3.79239	4.24220	K562	ZNF622
chr16	69352725	69352758	+	CDS,intron-Proximal	3.67188	4.20387	K562	ZNF622
chr16	69352724	69352801	+	CDS,intron-Proximal	4.92695	7.88172	K562	LIN28B
chr16	69352548	69352608	+	CDS,intron-Proximal	3.30211	4.87883	K562	BUD13
chr16	69352558	69352615	+	CDS,intron-Proximal	3.43695	4.24993	HepG2	PPIG
chr16	69350166	69350257	+	CDS	3.19752	3.49777	K562	ZNF800
chr16	69352724	69352742	+	CDS,intron-Proximal	3.71959	3.43253	K562	YBX3
chr16	69354590	69354636	+	CDS,intron-Proximal	3.73986	4.74268	K562	UCHL5
chr16	69354606	69354685	+	CDS,intron-Proximal	3.22345	3.73413	HepG2	PPIG
chr16	69353416	69353483	+	CDS,intron-Proximal	3.37015	4.41130	K562	AQR
chr16	69349910	69349957	+	CDS,intron-Proximal	3.98910	7.86788	K562	YBX3
chr16	69354143	69354172	+	CDS	4.19943	3.87930	K562	UPF1
chr16	69350125	69350166	+	CDS,intron-Proximal	4.47174	3.63055	K562	ZNF800
chr16	69350214	69350314	+	CDS,intron-Proximal	4.58167	5.47493	HepG2	BUD13
chr16	69352580	69352614	+	CDS	3.85188	5.47804	K562	ZNF622
chr16	69345395	69345486	+	5'-UTR,CDS,intron-Distal,intron-Proximal	4.45265	6.95612	HepG2	PRPF8
chr16	69345371	69345438	+	5'-UTR,CDS,intron-Distal,intron-Proximal	4.15792	5.06399	K562	DDX3X
chr16	69336517	69336591	+	3'-UTR,intron-Distal	3.98910	4.12025	K562	YBX3
chr16	69345298	69345371	+	5'-UTR,intron-Distal	3.75635	5.11648	K562	DDX3X
chr16	69345314	69345413	+	5'-UTR,intron-Distal	3.67888	14.69575	HepG2	DDX3X
chr16	69345407	69345437	+	5'-UTR,CDS,intron-Distal,intron-Proximal	4.16185	3.43253	K562	YBX3
chr16	69350037	69350090	+	intron-Proximal	3.90453	3.05889	HepG2	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-343C2.11 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-343C2.11 is not available on ENCORE database.
59 RBPs can affect the levels of RP11-343C2.11.

The Knockdown/knockout RNA-Seq assay for RP11-343C2.11 is not available on ENCORE database.

59 RBPs can affect the gene expression of RP11-343C2.11 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-343C2.11	ENSG00000260914.2	141.02680	317.97330	-1.17290	6.75640	5.71680	HepG2	CPSF6
RP11-343C2.11	ENSG00000260914.2	186.29320	77.53460	1.26460	7.62230	5.58350	HepG2	DDX47
RP11-343C2.11	ENSG00000260914.2	94.25730	16.70350	2.49640	2.81260	1.44760	HepG2	DDX52
RP11-343C2.11	ENSG00000260914.2	112.67550	19.96830	2.49630	4.75150	3.57260	HepG2	EEF2
RP11-343C2.11	ENSG00000260914.2	109.82580	16.68370	2.71860	2.57480	1.50140	HepG2	EFTUD2
RP11-343C2.11	ENSG00000260914.2	107.03900	60.08050	0.83310	2.43800	1.38650	HepG2	FUS
RP11-343C2.11	ENSG00000260914.2	9.81430	0.00000	99999.99990	2.64640	1.96980	HepG2	FXR1
RP11-343C2.11	ENSG00000260914.2	17.86010	0.00000	99999.99990	5.02650	3.81620	HepG2	G3BP2
RP11-343C2.11	ENSG00000260914.2	98.87080	14.45940	2.77340	7.61470	6.15700	HepG2	GEMIN5
RP11-343C2.11	ENSG00000260914.2	123.11840	57.75600	1.09190	3.53930	1.94700	HepG2	HLTF
RP11-343C2.11	ENSG00000260914.2	154.79370	343.98390	-1.15200	8.95080	7.89070	HepG2	HNRNPLL
RP11-343C2.11	ENSG00000260914.2	0.00000	49.54450	-99999.99999	3.30520	1.97740	HepG2	LIN28B
RP11-343C2.11	ENSG00000260914.2	73.43440	17.00440	2.11040	3.26510	2.12240	HepG2	METAP2
RP11-343C2.11	ENSG00000260914.2	3.92880	102.51980	-4.70570	2.76900	2.00470	HepG2	NOL12
RP11-343C2.11	ENSG00000260914.2	17.22370	111.46500	-2.69410	3.55500	1.92490	HepG2	NOLC1
RP11-343C2.11	ENSG00000260914.2	71.61930	13.41960	2.41590	3.28210	1.93930	HepG2	PKM
RP11-343C2.11	ENSG00000260914.2	8.42270	103.98380	-3.62590	2.13770	1.60300	HepG2	PUM1
RP11-343C2.11	ENSG00000260914.2	0.00000	31.65810	-99999.99999	3.61520	3.04430	HepG2	RBM22
RP11-343C2.11	ENSG00000260914.2	0.00000	56.76580	-99999.99999	3.44640	2.33380	HepG2	RBM27
RP11-343C2.11	ENSG00000260914.2	0.00000	46.09510	-99999.99999	2.87940	1.79670	HepG2	RCC2
RP11-343C2.11	ENSG00000260914.2	0.00000	53.43990	-99999.99999	3.41800	2.22120	HepG2	RPS5
RP11-343C2.11	ENSG00000260914.2	127.42200	15.86510	3.00560	14.43680	12.39440	HepG2	SERBP1
RP11-343C2.11	ENSG00000260914.2	293.14110	693.07720	-1.24140	4.17060	2.42710	HepG2	SF1
RP11-343C2.11	ENSG00000260914.2	239.25900	618.42340	-1.37000	4.86590	3.00020	HepG2	SNRNP200
RP11-343C2.11	ENSG00000260914.2	160.26790	378.84050	-1.24110	7.08100	5.82570	HepG2	SNRNP70
RP11-343C2.11	ENSG00000260914.2	0.00000	96.73020	-99999.99999	4.45920	3.69840	HepG2	SRSF5
RP11-343C2.11	ENSG00000260914.2	198.09830	335.27090	-0.75910	4.82760	3.90600	HepG2	TARDBP
RP11-343C2.11	ENSG00000260914.2	6.71950	101.38770	-3.91540	2.10010	1.37660	HepG2	UBE2L3
RP11-343C2.11	ENSG00000260914.2	60.32860	134.03650	-1.15170	5.73170	4.78460	HepG2	UPF1
RP11-343C2.11	ENSG00000260914.2	44.27330	137.77030	-1.63780	9.30970	7.52740	HepG2	UTP18
RP11-343C2.11	ENSG00000260914.2	82.10820	129.40690	-0.65630	2.09050	1.55570	HepG2	UTP3
RP11-343C2.11	ENSG00000260914.2	35.99660	9.37070	1.94150	3.61930	2.35730	HepG2	XPO5
RP11-343C2.11	ENSG00000260914.2	110.11030	53.98970	1.02810	2.91000	1.61510	HepG2	XRCC5
RP11-343C2.11	ENSG00000260914.2	58.02330	206.28010	-1.82990	2.87230	1.86690	K562	AKAP8
RP11-343C2.11	ENSG00000260914.2	206.55430	317.07810	-0.61830	4.50060	3.06620	K562	CPEB4
RP11-343C2.11	ENSG00000260914.2	239.86500	332.71940	-0.47210	2.10110	1.40920	K562	CPSF6
RP11-343C2.11	ENSG00000260914.2	50.12410	10.11740	2.30860	3.91510	1.63550	K562	DAZAP1
RP11-343C2.11	ENSG00000260914.2	245.04500	328.12520	-0.42120	2.46720	1.84710	K562	DDX47
RP11-343C2.11	ENSG00000260914.2	7.31940	0.00000	99999.99990	2.20300	1.46730	K562	EIF4A3
RP11-343C2.11	ENSG00000260914.2	218.34600	86.32150	1.33870	3.89000	2.52620	K562	FKBP4
RP11-343C2.11	ENSG00000260914.2	0.00000	17.88150	-99999.99999	5.50510	3.40230	K562	G3BP1
RP11-343C2.11	ENSG00000260914.2	227.42790	317.65180	-0.48200	2.37810	1.64000	K562	GPKOW
RP11-343C2.11	ENSG00000260914.2	320.44940	669.28160	-1.06250	2.80460	1.57450	K562	HNRNPA2B1
RP11-343C2.11	ENSG00000260914.2	80.82800	18.66780	2.11420	7.49380	5.36680	K562	HNRNPK
RP11-343C2.11	ENSG00000260914.2	167.37390	296.52850	-0.82510	5.81060	4.22220	K562	HNRNPL
RP11-343C2.11	ENSG00000260914.2	180.72740	271.27010	-0.58590	2.26630	1.42970	K562	KRR1
RP11-343C2.11	ENSG00000260914.2	0.00000	19.65460	-99999.99999	6.15230	4.87830	K562	MAGOH
RP11-343C2.11	ENSG00000260914.2	0.00000	19.60900	-99999.99999	6.17780	4.72060	K562	MATR3
RP11-343C2.11	ENSG00000260914.2	219.79100	310.06930	-0.49650	2.42180	1.60540	K562	METAP2
RP11-343C2.11	ENSG00000260914.2	211.11280	585.81800	-1.47240	4.65620	3.27980	K562	PABPN1
RP11-343C2.11	ENSG00000260914.2	0.00000	19.23030	-99999.99999	5.92760	3.86400	K562	PCBP1
RP11-343C2.11	ENSG00000260914.2	138.45750	696.85190	-2.33140	7.53980	4.73200	K562	PPP1R8
RP11-343C2.11	ENSG00000260914.2	3.88120	19.09850	-2.29890	1.93590	1.36250	K562	PTBP1
RP11-343C2.11	ENSG00000260914.2	0.00000	18.29240	-99999.99999	5.90760	4.62070	K562	RBM22
RP11-343C2.11	ENSG00000260914.2	0.00000	17.84750	-99999.99999	5.51800	3.35450	K562	RBM34
RP11-343C2.11	ENSG00000260914.2	317.67850	803.66840	-1.33900	3.90240	1.34460	K562	DROSHA
RP11-343C2.11	ENSG00000260914.2	105.28230	195.59790	-0.89360	3.94570	1.74550	K562	SAFB2
RP11-343C2.11	ENSG00000260914.2	116.85150	535.96780	-2.19750	7.30120	5.02850	K562	SF1
RP11-343C2.11	ENSG00000260914.2	104.17040	653.72900	-2.64970	9.54610	6.65350	K562	SFPQ
RP11-343C2.11	ENSG00000260914.2	20.65600	114.10560	-2.46570	5.57800	3.98370	K562	SRSF4
RP11-343C2.11	ENSG00000260914.2	0.00000	17.69700	-99999.99999	5.52340	3.94460	K562	SRSF5
RP11-343C2.11	ENSG00000260914.2	0.00000	18.27600	-99999.99999	5.56110	4.33600	K562	TIA1
RP11-343C2.11	ENSG00000260914.2	0.00000	17.95600	-99999.99999	5.27790	3.66630	K562	TRA2A
RP11-343C2.11	ENSG00000260914.2	0.00000	53.60040	-99999.99999	11.22920	8.28030	K562	TUFM
RP11-343C2.11	ENSG00000260914.2	78.96490	4.95660	3.99370	3.23750	1.83140	K562	WRN
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-343C2.11 is not available on ENCORE database.

1 RBPs can affect the splicing of RP11-343C2.11 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
A3SS	RP11-343C2.11	ENSG00000260914.2	chr16	+	69353289	69353446			69353412	69353446	69352725	69352845	-0.10300	0.00018	0.04660	shorter	K562	SUPV3L1
MXE	RP11-343C2.11	ENSG00000260914.2	chr16	+	69352725	69352845	69353289	69353446	69352552	69352614	69354043	69354192	0.15100	0.00595	0.09071	1included	K562	SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-343C2.11

General Information

Functions

Localization

Domains (AlphaFold: RP11-343C2.11)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-343C2.11 is not avaliable on ENCORE database.

13 proteins are bound to RP11-343C2.11 RNA:

eCLIP assay for RP11-343C2.11 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-343C2.11 is not available on ENCORE database.

59 RBPs can affect the gene expression of RP11-343C2.11 :

The Knockdown/knockout RNA-Seq assay for RP11-343C2.11 is not available on ENCORE database.

1 RBPs can affect the splicing of RP11-343C2.11 :

The Knockdown/knockout RNA-Seq assay for RP11-343C2.11 is not avaliable on ENCORE database.