RP11-33B1.1

General Information

Gene Name       : RP11-33B1.1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-33B1.1)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-33B1.1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • RP11-33B1.1 RNA is bound by 19 proteins.  







eCLIP assay for RP11-33B1.1 is not avaliable on ENCORE database.





19 proteins are bound to RP11-33B1.1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr4120388926120388984+intron-Distal3.5928410.35946HepG2SUGP2
chr4120419990120420041+intron-Distal3.262643.27276HepG2HNRNPL
chr4120464247120464295+intron-Distal4.4881010.27049K562HNRNPL
chr4120437169120437235+intron-Distal4.522844.51299HepG2SUGP2
chr4120388778120388814+intron-Distal3.784894.81844HepG2SUGP2
chr4120464295120464337+intron-Distal4.103726.87274K562HNRNPL
chr4120389375120389435+intron-Distal4.7772214.45079HepG2SUGP2
chr4120388861120388899+intron-Distal3.434533.59523HepG2SUGP2
chr4120458623120458773+intron-Distal5.3204112.52640K562PTBP1
chr4120381514120381610+intron-Distal3.998323.45805K562KHSRP
chr4120381322120381390+intron-Distal,intron-Proximal3.962483.56076K562BUD13
chr4120389264120389308+intron-Distal3.569397.91745HepG2SUGP2
chr4120435255120435278+intron-Distal3.897973.04956HepG2HNRNPL
chr4120388923120388985+intron-Distal5.4270819.44015HepG2MATR3
chr4120420691120420763+intron-Distal,intron-Proximal3.323897.36622HepG2U2AF2
chr4120403775120403826+intron-Distal3.205544.12241K562SAFB2
chr4120440623120440689+intron-Distal,intron-Proximal3.286897.36622HepG2U2AF2
chr4120390190120390259+intron-Distal3.365786.31916HepG2SUGP2
chr4120403153120403259+intron-Distal4.226004.15306K562SAFB2
chr4120389381120389419+intron-Distal4.297803.96879HepG2MATR3
chr4120435820120435894+intron-Distal3.430984.36650HepG2SUGP2
chr4120388850120388920+intron-Distal5.278596.93116HepG2QKI
chr4120469930120469995+intron-Distal4.944534.07628HepG2PTBP1
chr4120402058120402146+intron-Distal4.095833.89294K562KHSRP
chr4120420670120420774+intron-Distal,intron-Proximal3.731234.57435K562SF3B4
chr4120464240120464281+intron-Distal3.896426.33179K562AGGF1
chr4120464281120464341+intron-Distal3.643435.34365K562AGGF1
chr4120450499120450594+intron-Distal3.822323.16986HepG2QKI
chr4120458630120458761+intron-Distal4.2106810.76940HepG2PTBP1
chr4120458053120458134+intron-Distal3.330003.35377HepG2QKI
chr4120440630120440701+intron-Distal,intron-Proximal3.749253.56057K562U2AF2
chr4120459559120459657+intron-Distal6.3608422.14555HepG2HNRNPL
chr4120437158120437230+intron-Distal3.858966.08725HepG2HNRNPL
chr4120379112120379171+intron-Distal,intron-Proximal4.701347.29386HepG2U2AF2
chr4120437540120437625+intron-Distal3.444527.16388HepG2HNRNPL
chr4120403826120403899+intron-Distal4.738607.76000K562SAFB2
chr4120464139120464247+intron-Distal4.5477526.39991HepG2HNRNPL
chr4120403681120403759+intron-Distal4.319244.37667K562SAFB2
chr4120388914120388984+intron-Distal5.5152712.06807K562MATR3
chr4120434658120434716+intron-Distal3.445714.00486HepG2HNRNPL
chr4120468737120468848+intron-Distal3.399074.93120K562KHSRP
chr4120381312120381379+intron-Distal,intron-Proximal4.207258.64802HepG2U2AF2
chr4120388925120388977+intron-Distal3.063603.51248K562PTBP1
chr4120388594120388655+intron-Distal3.217653.04190HepG2MATR3
chr4120464969120465038+intron-Distal,intron-Proximal3.910295.90868HepG2PRPF8
chr4120394364120394474+intron-Distal3.268635.49850HepG2HNRNPL
chr4120390001120390052+intron-Distal3.306913.59523HepG2SUGP2
chr4120388599120388705+intron-Distal3.617034.24981K562MATR3
chr4120459432120459518+intron-Distal4.242616.96969HepG2HNRNPL
chr4120436654120436782+intron-Distal4.818024.66737HepG2MATR3
chr4120408664120408723+intron-Distal3.861163.74251K562SAFB2
chr4120376320120376420+intron-Distal,intron-Proximal5.0229211.64439HepG2EFTUD2
chr4120464250120464327+intron-Distal4.7071317.37771HepG2HNRNPL
chr4120464170120464247+intron-Distal4.3531210.03443K562HNRNPL
chr4120461515120461586+intron-Distal4.058934.21977HepG2HNRNPL
chr4120471179120471315+intron-Distal4.720205.88023HepG2HNRNPL
chr4120388674120388749+intron-Distal3.269465.22993HepG2SUGP2
chr4120433967120434000+intron-Proximal3.905359.12548HepG2BCLAF1
chr4120384032120384061+intron-Proximal3.336196.36450HepG2U2AF2
chr4120382986120383009+intron-Proximal3.122555.35431HepG2BCLAF1
chr4120415631120415686+intron-Proximal3.004103.59602K562UCHL5
chr4120434045120434117+intron-Proximal3.854965.52342HepG2PPIG
chr4120415628120415680+intron-Proximal3.892587.23562HepG2BCLAF1
chr4120414487120414527+intron-Proximal3.546643.94979HepG2BCLAF1
chr4120376306120376349+intron-Proximal3.4078611.14388HepG2PRPF8
chr4120419026120419067+intron-Proximal3.355414.02291HepG2GRWD1
chr4120433966120433993+intron-Proximal3.960613.38114HepG2GRWD1
chr4120434003120434125+intron-Proximal3.741429.81646HepG2GRWD1
chr4120433483120433524+intron-Proximal3.157903.80334HepG2U2AF2
chr4120433577120433620+intron-Proximal4.054109.39582HepG2BCLAF1
chr4120433965120434067+intron-Proximal3.821887.13692K562ZNF622
chr4120381929120381982+intron-Proximal5.1978315.16835HepG2BCLAF1
chr4120384120120384135+intron-Proximal4.107205.36555HepG2BCLAF1
chr4120449913120449999+intron-Proximal3.542185.66421K562PRPF8
chr4120418965120418986+intron-Proximal3.372823.28366HepG2BCLAF1
chr4120434000120434114+intron-Proximal4.5785218.21824HepG2BCLAF1
chr4120376288120376338+intron-Proximal3.874884.98250K562AQR
chr4120415642120415685+intron-Proximal3.605244.71371HepG2GRWD1
chr4120415586120415628+intron-Proximal3.130114.61799HepG2BCLAF1
chr4120414572120414596+intron-Proximal3.261623.55800HepG2BCLAF1
chr4120384048120384135+intron-Proximal3.163955.97777HepG2PPIG
chr4120471513120471564+intron-Proximal4.605017.72109HepG2U2AF2
chr4120382871120382899+intron-Proximal5.033786.13315HepG2BCLAF1
chr4120449920120449980+intron-Proximal5.611516.01989HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-33B1.1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-33B1.1 is not available on ENCORE database.

  • 73 RBPs can affect the levels of RP11-33B1.1.  








The Knockdown/knockout RNA-Seq assay for RP11-33B1.1 is not available on ENCORE database.





73 RBPs can affect the gene expression of RP11-33B1.1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-33B1.1ENSG00000245958.2205.02770277.58130-0.437102.404501.83080HepG2ACO1
RP11-33B1.1ENSG00000245958.2189.21330278.92450-0.559903.416902.57580HepG2AKAP8L
RP11-33B1.1ENSG00000245958.2121.47930219.35650-0.852604.149803.19690HepG2ASCC1
RP11-33B1.1ENSG00000245958.2205.54100383.92220-0.901404.969503.93960HepG2CNOT7
RP11-33B1.1ENSG00000245958.2265.76420176.667700.589002.745102.06100HepG2CPSF6
RP11-33B1.1ENSG00000245958.2143.57370231.05770-0.686502.862701.92700HepG2EEF2
RP11-33B1.1ENSG00000245958.2123.15790187.58010-0.607002.246601.42390HepG2EIF3D
RP11-33B1.1ENSG00000245958.2183.49910271.28820-0.564102.951302.09160HepG2EWSR1
RP11-33B1.1ENSG00000245958.2139.39660300.26630-1.107006.979705.81530HepG2FIP1L1
RP11-33B1.1ENSG00000245958.2252.66030137.993500.872505.202904.13570HepG2FUBP3
RP11-33B1.1ENSG00000245958.2108.02840167.01960-0.628602.442301.60510HepG2GEMIN5
RP11-33B1.1ENSG00000245958.2148.20670237.60890-0.681003.455202.31040HepG2GNB2L1
RP11-33B1.1ENSG00000245958.2215.10550332.56020-0.628603.132501.52070HepG2HNRNPD
RP11-33B1.1ENSG00000245958.2472.25610219.565901.1048010.641309.35220HepG2HNRNPK
RP11-33B1.1ENSG00000245958.2450.71350366.076400.300001.873101.30420HepG2HNRNPL
RP11-33B1.1ENSG00000245958.2264.72420191.114500.470001.851301.32620HepG2HNRNPLL
RP11-33B1.1ENSG00000245958.2130.47550209.18650-0.681003.745203.05020HepG2HNRNPU
RP11-33B1.1ENSG00000245958.2236.82970354.63370-0.582502.711701.49780HepG2HSPD1
RP11-33B1.1ENSG00000245958.2188.29900253.77330-0.430502.241201.32120HepG2KIF1C
RP11-33B1.1ENSG00000245958.2334.72250233.881700.517102.431101.81550HepG2MAGOH
RP11-33B1.1ENSG00000245958.2154.68570235.20210-0.604602.310701.73090HepG2MATR3
RP11-33B1.1ENSG00000245958.2357.79630169.462601.078108.312607.06470HepG2NSUN2
RP11-33B1.1ENSG00000245958.2146.21310207.07060-0.502002.263301.49030HepG2PARN
RP11-33B1.1ENSG00000245958.2290.50920213.391200.445002.467701.88690HepG2PCBP1
RP11-33B1.1ENSG00000245958.2259.83560163.696600.666503.771102.88140HepG2PRPF4
RP11-33B1.1ENSG00000245958.2255.36770403.78370-0.661006.438105.61260HepG2PUM1
RP11-33B1.1ENSG00000245958.2213.47980403.49450-0.918408.586507.43410HepG2PUM2
RP11-33B1.1ENSG00000245958.2314.85230235.148500.421002.086101.53180HepG2QKI
RP11-33B1.1ENSG00000245958.2177.63850269.38340-0.600701.999501.39050HepG2RAVER1
RP11-33B1.1ENSG00000245958.2208.42590344.85560-0.726505.290904.63200HepG2RBM22
RP11-33B1.1ENSG00000245958.2322.92990213.421900.597403.583002.82310HepG2RBM25
RP11-33B1.1ENSG00000245958.288.35130182.51190-1.046705.507804.67270HepG2RPS19
RP11-33B1.1ENSG00000245958.2239.81150385.63030-0.685303.676602.75490HepG2RPS3A
RP11-33B1.1ENSG00000245958.2165.26370264.28540-0.677303.566902.34090HepG2RPS5
RP11-33B1.1ENSG00000245958.299.18430183.19770-0.885203.998902.86980HepG2SERBP1
RP11-33B1.1ENSG00000245958.2353.24090226.055100.643904.703703.96360HepG2SF3B4
RP11-33B1.1ENSG00000245958.2232.54210375.56140-0.691605.815704.95730HepG2SRSF5
RP11-33B1.1ENSG00000245958.2291.69840427.12610-0.550204.535103.77490HepG2SUCLG1
RP11-33B1.1ENSG00000245958.2471.22400212.115201.1515015.3194014.15840HepG2TAF15
RP11-33B1.1ENSG00000245958.2183.86440346.89470-0.915902.758901.69330HepG2TBRG4
RP11-33B1.1ENSG00000245958.2141.15120205.07860-0.538902.668302.11200HepG2TRIM56
RP11-33B1.1ENSG00000245958.2154.49330256.83280-0.733303.615902.90170HepG2U2AF1
RP11-33B1.1ENSG00000245958.2259.19900393.32580-0.601702.976802.11040HepG2UBE2L3
RP11-33B1.1ENSG00000245958.2224.93060330.72750-0.556203.839103.03680HepG2UPF1
RP11-33B1.1ENSG00000245958.2252.86480339.94840-0.426902.437601.44340HepG2UTP18
RP11-33B1.1ENSG00000245958.2213.49730319.30580-0.580703.825703.13930HepG2UTP3
RP11-33B1.1ENSG00000245958.2249.56960161.537700.627503.843803.07430HepG2ZC3H8
RP11-33B1.1ENSG00000245958.2240.94490363.73820-0.594204.965604.28640HepG2ZNF622
RP11-33B1.1ENSG00000245958.2238.90120430.04770-0.848108.422507.50610K562AGGF1
RP11-33B1.1ENSG00000245958.2246.70950447.47990-0.859007.584406.45510K562AKAP8L
RP11-33B1.1ENSG00000245958.2334.97160475.68820-0.506003.392202.01330K562APOBEC3C
RP11-33B1.1ENSG00000245958.2368.56400513.94440-0.479703.573102.20660K562CCDC124
RP11-33B1.1ENSG00000245958.2214.77280415.61000-0.952406.674005.72590K562DDX47
RP11-33B1.1ENSG00000245958.299.38190216.74120-1.124907.401806.11160K562EIF3G
RP11-33B1.1ENSG00000245958.2429.89220539.10710-0.326602.291301.43290K562EIF4G2
RP11-33B1.1ENSG00000245958.2159.44990241.02770-0.596102.975001.62270K562EWSR1
RP11-33B1.1ENSG00000245958.2252.72550171.755700.557102.826701.54870K562EXOSC5
RP11-33B1.1ENSG00000245958.2270.69490187.568900.529102.335601.31150K562FKBP4
RP11-33B1.1ENSG00000245958.2158.96610287.16580-0.853206.486705.61650K562FXR1
RP11-33B1.1ENSG00000245958.2403.37140282.225000.515202.503101.83640K562G3BP2
RP11-33B1.1ENSG00000245958.2506.09110375.640900.429902.796401.73430K562HNRNPL
RP11-33B1.1ENSG00000245958.2220.29480308.63760-0.486502.710401.82630K562HNRNPU
RP11-33B1.1ENSG00000245958.2173.41050312.47350-0.849506.587205.08100K562MATR3
RP11-33B1.1ENSG00000245958.2360.79440532.00910-0.560304.250903.08380K562MBNL1
RP11-33B1.1ENSG00000245958.2417.76860315.433200.405302.657901.86500K562MTPAP
RP11-33B1.1ENSG00000245958.2263.05990372.89850-0.503402.092101.34750K562NAA15
RP11-33B1.1ENSG00000245958.2170.23610334.42940-0.974203.838402.61880K562PABPN1
RP11-33B1.1ENSG00000245958.2104.69580192.66410-0.879903.778302.90240K562PRPF8
RP11-33B1.1ENSG00000245958.2232.99490304.18890-0.384701.884801.31770K562PTBP1
RP11-33B1.1ENSG00000245958.2327.91270443.80770-0.436602.359001.84920K562PUS1
RP11-33B1.1ENSG00000245958.2285.63640432.39850-0.598204.574903.83180K562RBM15
RP11-33B1.1ENSG00000245958.2112.64550196.27460-0.801103.239002.35470K562RPS19
RP11-33B1.1ENSG00000245958.2149.83550260.19980-0.796203.672902.49820K562RPS3
RP11-33B1.1ENSG00000245958.2222.99670373.10340-0.742602.592801.34910K562SFPQ
RP11-33B1.1ENSG00000245958.2194.27310298.19850-0.618203.571202.77430K562SRSF1
RP11-33B1.1ENSG00000245958.2397.99600279.686100.508802.809301.43890K562SSRP1
RP11-33B1.1ENSG00000245958.2437.33370255.802300.773605.668303.79870K562STAU1
RP11-33B1.1ENSG00000245958.2210.42380301.81360-0.520402.656801.96150K562TARDBP
RP11-33B1.1ENSG00000245958.2375.07510282.796300.407302.416301.66540K562U2AF2
RP11-33B1.1ENSG00000245958.2521.60650371.596900.489102.594801.89880K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-33B1.1 is not available on ENCORE database.





9 RBPs can affect the splicing of RP11-33B1.1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERP11-33B1.1ENSG00000245958.2chr4+120418965120419058120415587120415678120433505120433619-0.382000.000980.02061excludedK562SF3B4
SERP11-33B1.1ENSG00000245958.2chr4+120418965120419058120415580120415678120433505120433619-0.428000.004460.04855excludedHepG2U2AF2
SERP11-33B1.1ENSG00000245958.2chr4+120418965120419058120415580120415678120433505120433619-0.246000.000330.00472excludedK562AQR
SERP11-33B1.1ENSG00000245958.2chr4+120464907120465000120449894120449944120471533120471652-0.771000.001790.01991excludedK562AQR
SERP11-33B1.1ENSG00000245958.2chr4+1204097991204098721203840501203841341204144871204145920.184000.000020.00232includedHepG2SFPQ
SERP11-33B1.1ENSG00000245958.2chr4+120414487120414592120384050120384134120415587120415678-0.218000.001410.02969excludedK562U2AF1
SERP11-33B1.1ENSG00000245958.2chr4+120418965120419058120415587120415678120433505120433619-0.448000.000350.00965excludedK562U2AF1
SERP11-33B1.1ENSG00000245958.2chr4+1204189651204190581204155871204156781204335051204336190.344000.000200.01884includedHepG2HNRNPL
SERP11-33B1.1ENSG00000245958.2chr4+1203791251203793251203759451203762881203813371203814350.794000.001580.03688includedHepG2SRSF1
SERP11-33B1.1ENSG00000245958.2chr4+1203791251203793251203759451203762881203813371203814350.429000.003440.07948includedHepG2SF3A3
SERP11-33B1.1ENSG00000245958.2chr4+120409799120409872120384050120384134120414487120414592-0.305000.000020.00192excludedHepG2HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RP11-33B1.1 is not avaliable on ENCORE database.