RCAN3

General Information

Gene Name       : RCAN3
Gene ID             : ENSG00000117602.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RCAN3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RCAN3ENSG00000117602.110.050.090.07ENCSR000AEF
HepG2RCAN3ENSG00000117602.115.567.176.37ENCSR985KAT
K562RCAN3ENSG00000117602.110.400.290.34ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RCAN3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RCAN3 RNA is bound by 1 proteins.  







eCLIP assay for RCAN3 is not avaliable on ENCORE database.





1 proteins are bound to RCAN3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12484096124841057+CDS4.042293.56019HepG2GRWD1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RCAN3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RCAN3 is not available on ENCORE database.

  • 61 RBPs can affect the levels of RCAN3.  








The Knockdown/knockout RNA-Seq assay for RCAN3 is not available on ENCORE database.





61 RBPs can affect the gene expression of RCAN3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RCAN3ENSG00000117602.7491.29600908.05860-0.886208.292807.42640HepG2AKAP1
RCAN3ENSG00000117602.7587.06360809.37960-0.463305.148704.25960HepG2AUH
RCAN3ENSG00000117602.7261.67620520.90070-0.993207.363505.79550HepG2BCCIP
RCAN3ENSG00000117602.7392.83570751.06440-0.935008.079306.40230HepG2CCAR1
RCAN3ENSG00000117602.7936.96030713.830600.392302.586401.83660HepG2CIRBP
RCAN3ENSG00000117602.7384.35240511.58470-0.412503.479402.74890HepG2CKAP4
RCAN3ENSG00000117602.7469.02660714.68580-0.607603.184802.36050HepG2CNOT7
RCAN3ENSG00000117602.7366.93410512.13220-0.481002.086501.40540HepG2DDX55
RCAN3ENSG00000117602.7934.85730444.961701.071007.866006.26110HepG2DDX59
RCAN3ENSG00000117602.7627.83440489.564200.358802.802802.12140HepG2DKC1
RCAN3ENSG00000117602.7501.52880718.33250-0.518303.443502.78550HepG2EIF2S1
RCAN3ENSG00000117602.7524.23030793.85610-0.598704.352003.55420HepG2EIF4A3
RCAN3ENSG00000117602.7490.61040772.90310-0.655704.100603.27080HepG2EIF4B
RCAN3ENSG00000117602.7722.57020929.26330-0.362903.470402.80870HepG2ETF1
RCAN3ENSG00000117602.7402.91820584.83660-0.537502.815101.69170HepG2FUS
RCAN3ENSG00000117602.7567.82050742.99750-0.387902.182001.58850HepG2G3BP1
RCAN3ENSG00000117602.7328.43480661.53650-1.010208.174106.28200HepG2GRSF1
RCAN3ENSG00000117602.7853.41330560.745500.605803.024301.57460HepG2HLTF
RCAN3ENSG00000117602.7643.73320442.467400.540804.169303.39860HepG2HNRNPA1
RCAN3ENSG00000117602.7386.25810589.89230-0.610903.853102.19090HepG2HNRNPAB
RCAN3ENSG00000117602.7377.19300492.14480-0.383802.036101.43100HepG2HNRNPC
RCAN3ENSG00000117602.7477.23270752.29920-0.656605.770304.79030HepG2HNRNPK
RCAN3ENSG00000117602.7521.74410652.33460-0.322302.771202.09710HepG2HNRNPL
RCAN3ENSG00000117602.7620.25170423.935300.548903.288202.60830HepG2HNRNPLL
RCAN3ENSG00000117602.7372.42870499.39050-0.423203.766102.92360HepG2ILF2
RCAN3ENSG00000117602.7555.56660793.12430-0.513603.035602.16210HepG2LARP4
RCAN3ENSG00000117602.7342.25530474.04490-0.470002.745701.53770HepG2LIN28B
RCAN3ENSG00000117602.7381.74930805.69500-1.0776011.5770010.35020HepG2MATR3
RCAN3ENSG00000117602.7472.85930734.45700-0.635305.032204.06940HepG2PABPC4
RCAN3ENSG00000117602.7330.03580483.94270-0.552204.849303.76550HepG2PARN
RCAN3ENSG00000117602.7391.03470679.89610-0.7980011.4145010.31840HepG2PCBP1
RCAN3ENSG00000117602.7604.14290480.914100.329002.541101.79690HepG2PRPF4
RCAN3ENSG00000117602.7562.95420691.84460-0.297402.170701.67500HepG2PTBP1
RCAN3ENSG00000117602.7919.88760719.051200.355302.910502.22360HepG2PUM2
RCAN3ENSG00000117602.7421.56870521.20780-0.306102.107201.55150HepG2PUS1
RCAN3ENSG00000117602.7987.51530749.231700.398303.797503.08210HepG2QKI
RCAN3ENSG00000117602.7366.69300534.20210-0.542802.142801.51660HepG2RAVER1
RCAN3ENSG00000117602.7527.47900717.37220-0.443602.277901.55080HepG2RPS3A
RCAN3ENSG00000117602.7670.75410419.639600.676506.100105.08770HepG2SF3B1
RCAN3ENSG00000117602.7459.10960720.25480-0.649707.900706.98310HepG2SF3B4
RCAN3ENSG00000117602.7397.32380544.95510-0.455802.217701.36990HepG2SMNDC1
RCAN3ENSG00000117602.71281.19880877.253000.546309.410308.63670HepG2SRFBP1
RCAN3ENSG00000117602.7533.91470669.28620-0.326002.557301.95120HepG2SRSF5
RCAN3ENSG00000117602.7880.80400611.651900.526007.343806.52200HepG2SRSF9
RCAN3ENSG00000117602.71101.42580761.671500.532008.465707.66450HepG2SSB
RCAN3ENSG00000117602.7792.27920509.853400.635805.063204.19190HepG2SUPV3L1
RCAN3ENSG00000117602.7488.69950675.80540-0.467704.309103.63290HepG2TAF15
RCAN3ENSG00000117602.7300.80520413.08010-0.457601.991901.36430HepG2TARDBP
RCAN3ENSG00000117602.7314.73780479.29250-0.606806.043605.26690HepG2TRIM56
RCAN3ENSG00000117602.7808.56310489.490200.724006.894605.91480HepG2U2AF1
RCAN3ENSG00000117602.7436.73040700.96840-0.682604.798203.67860HepG2UBE2L3
RCAN3ENSG00000117602.7149.35150301.20920-1.012106.987405.77140HepG2UCHL5
RCAN3ENSG00000117602.7610.80280496.846700.297802.208801.57360HepG2UPF1
RCAN3ENSG00000117602.7698.50750546.437700.354103.481802.88820HepG2ZNF622
RCAN3ENSG00000117602.735.7071011.751401.603302.443401.87820K562HNRNPC
RCAN3ENSG00000117602.750.2794021.133801.250302.610501.88240K562NSUN2
RCAN3ENSG00000117602.775.4421026.915301.486804.042803.03740K562PCBP3
RCAN3ENSG00000117602.7109.1999028.844801.920508.397506.96930K562PUF60
RCAN3ENSG00000117602.792.3482030.062001.619006.262504.79850K562PUM2
RCAN3ENSG00000117602.746.2647018.504101.322002.225401.36300K562SF3B1
RCAN3ENSG00000117602.733.2545010.134601.714202.610701.70340K562TIAL1
RCAN3ENSG00000117602.757.7042022.408701.364503.275502.49760K562UPF1
RCAN3ENSG00000117602.743.8894016.315101.427602.645701.47350K562UTP3
RCAN3ENSG00000117602.747.9790019.174301.323102.851401.96110K562WDR3
RCAN3ENSG00000117602.776.0128024.978201.605505.516404.22960K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RCAN3 is not available on ENCORE database.





1 RBPs can affect the splicing of RCAN3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERCAN3ENSG00000117602.7chr1+2485957224859744248577072485788124861582248618470.070000.006370.06432includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RCAN3 is not avaliable on ENCORE database.