RAB28

General Information

Gene Name       : RAB28
Gene ID             : ENSG00000157869.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RAB28)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RAB28ENSG00000157869.1416.3313.6114.97ENCSR000AEF
HepG2RAB28ENSG00000157869.146.2112.619.41ENCSR985KAT
K562RAB28ENSG00000157869.1416.7517.1316.94ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RAB28 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RAB28 RNA is bound by 18 proteins.  







eCLIP assay for RAB28 is not avaliable on ENCORE database.





18 proteins are bound to RAB28 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr41336953613369554-3'-UTR,intron-Distal4.8475316.15298K562KHSRP
chr41336948713369555-3'-UTR,intron-Distal4.647609.89284HepG2FUBP3
chr41338311313383203-3'-UTR,CDS,intron-Distal,intron-Proximal3.642423.05460HepG2PPIG
chr41336980013369864-3'-UTR,intron-Distal4.1126317.76792K562PUM2
chr41336986413369904-3'-UTR,intron-Distal4.316315.20626K562PUM2
chr41336948713369557-3'-UTR,intron-Distal3.371104.90382K562DDX6
chr41336949313369556-3'-UTR,intron-Distal3.175484.30740K562CPSF6
chr41336956913369623-3'-UTR,intron-Distal3.416464.08064K562KHSRP
chr41336948613369536-3'-UTR,intron-Distal4.4482817.64208K562KHSRP
chr41348587713485961-5'-UTR,intron-Distal,intron-Proximal5.554498.53120K562LIN28B
chr41346233113462416-CDS,intron-Distal3.957785.35703HepG2BCLAF1
chr41346232513462393-CDS,intron-Distal3.898694.22917HepG2PPIG
chr41348113313481151-CDS,intron-Distal,intron-Proximal4.023903.20743HepG2PPIG
chr41347593913475969-CDS,intron-Distal,intron-Proximal3.225094.34695HepG2BCLAF1
chr41343260713432651-intron-Distal3.846023.16028HepG2SUGP2
chr41348345913483530-intron-Distal3.972103.41738HepG2PTBP1
chr41344836913448464-intron-Distal3.638953.12651K562SAFB2
chr41343819313438240-intron-Distal5.9604615.65314K562EXOSC5
chr41346043613460544-intron-Distal4.087873.59673K562HNRNPL
chr41343328413433334-intron-Distal4.344864.38558HepG2HNRNPM
chr41343788113437931-intron-Distal4.410483.34098HepG2HNRNPM
chr41343320213433258-intron-Distal3.994043.29248HepG2SUGP2
chr41345267513452807-intron-Distal3.300513.73364K562SAFB2
chr41341567513415745-intron-Distal4.159233.62366HepG2HNRNPM
chr41348433213484407-intron-Distal4.569823.35169HepG2U2AF2
chr41343296413433064-intron-Distal3.925095.95943HepG2HNRNPM
chr41338298913383070-intron-Distal,intron-Proximal4.776545.54528HepG2QKI
chr41343874313438790-intron-Distal5.182278.03988K562EXOSC5
chr41337548213375618-intron-Distal5.5739613.02766K562HNRNPL
chr41338119113381282-intron-Distal3.994774.33990HepG2QKI
chr41343599513436076-intron-Distal4.611314.48560K562EXOSC5
chr41343838813438427-intron-Distal4.841036.41304K562EXOSC5
chr41341958713419643-intron-Distal3.159983.10961HepG2MATR3
chr41348122713481270-intron-Distal,intron-Proximal3.758715.56048K562KHSRP
chr41343849813438534-intron-Distal5.091988.03988K562EXOSC5
chr41343111713431185-intron-Distal4.231484.72162K562KHSRP
chr41343318013433231-intron-Distal4.805415.68226HepG2HNRNPM
chr41343753613437618-intron-Distal5.9763214.31968K562EXOSC5
chr41336921413369331-intron-Distal,intron-Proximal4.043294.22598K562CSTF2T
chr41343617913436212-intron-Distal3.903793.01445K562EXOSC5
chr41348127013481317-intron-Distal4.396565.62258K562KHSRP
chr41348340813483524-intron-Distal5.563607.41017K562PTBP1
chr41343105513431117-intron-Distal4.666847.24774K562KHSRP
chr41341957513419642-intron-Distal4.224053.79098HepG2SUGP2
chr41340058713400711-intron-Distal4.444135.68841K562KHSRP
chr41338078113380832-intron-Distal4.681926.62827HepG2SUGP2
chr41343879313438832-intron-Distal5.133517.71312K562EXOSC5
chr41343804713438085-intron-Distal4.667985.12432K562EXOSC5
chr41344634213446443-intron-Distal3.048963.16798K562SAFB2
chr41348385413483922-intron-Distal3.024143.46531K562KHSRP
chr41339119513391297-intron-Distal4.385064.48623K562EXOSC5
chr41343826313438307-intron-Distal4.083026.41051K562EXOSC5
chr41345765713457735-intron-Distal4.030223.95960K562SAFB2
chr41343295913433032-intron-Distal4.569963.28572K562HNRNPM
chr41343624913436279-intron-Distal3.118213.14999K562EXOSC5
chr41343709013437105-intron-Distal3.261093.72904K562EXOSC5
chr41345750713457583-intron-Distal3.253954.48636K562SAFB2
chr41345758313457641-intron-Distal4.343495.63023K562SAFB2
chr41337066413370748-intron-Distal3.190723.29251K562KHSRP
chr41343716213437204-intron-Distal4.012016.41051K562EXOSC5
chr41343748613437536-intron-Distal4.7205212.54773K562EXOSC5
chr41338728913387364-intron-Distal3.505923.59351HepG2MATR3
chr41343283113432889-intron-Distal3.992413.86809HepG2SUGP2
chr41343691113436969-intron-Distal4.815356.73640K562EXOSC5
chr41337975313379849-intron-Distal3.808048.94372HepG2QKI
chr41341878913418893-intron-Distal4.283254.53347HepG2SUGP2
chr41337799613378099-intron-Distal,intron-Proximal3.213834.30679K562KHSRP
chr41337550013375567-intron-Distal5.9705910.00393HepG2HNRNPL
chr41343907813439126-intron-Distal3.894495.50856K562EXOSC5
chr41348397013484091-intron-Distal3.610985.14864K562KHSRP
chr41337558513375626-intron-Distal3.645185.97285HepG2HNRNPL
chr41346045713460547-intron-Distal3.427724.26114HepG2HNRNPL
chr41337556713375585-intron-Distal4.101517.76978HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RAB28 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RAB28 is not available on ENCORE database.

  • 70 RBPs can affect the levels of RAB28.  








The Knockdown/knockout RNA-Seq assay for RAB28 is not available on ENCORE database.





70 RBPs can affect the gene expression of RAB28 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RAB28ENSG00000157869.10215.37230426.82810-0.986806.961606.16000HepG2AKAP1
RAB28ENSG00000157869.10221.76120353.15200-0.671303.841802.92150HepG2ASCC1
RAB28ENSG00000157869.10132.25610228.24640-0.787304.021103.31470HepG2BOP1
RAB28ENSG00000157869.10120.76180222.59390-0.882206.127705.20930HepG2CKAP4
RAB28ENSG00000157869.10250.46830163.364400.616402.160201.48930HepG2CNOT7
RAB28ENSG00000157869.10255.51420408.84230-0.678104.184003.42830HepG2DDX3X
RAB28ENSG00000157869.10151.92690351.26700-1.209209.111908.06030HepG2DDX6
RAB28ENSG00000157869.10132.47970215.78890-0.703804.340603.55710HepG2DNAJC2
RAB28ENSG00000157869.10165.02080260.11290-0.656502.959702.00730HepG2EEF2
RAB28ENSG00000157869.10216.41310337.61890-0.641603.448802.79050HepG2EIF2S1
RAB28ENSG00000157869.1090.76820192.41410-1.084006.331604.79910HepG2EIF3G
RAB28ENSG00000157869.10144.57980373.07840-1.3676012.1306010.81990HepG2EIF4A3
RAB28ENSG00000157869.10194.42080363.30190-0.902005.004204.09810HepG2EIF4B
RAB28ENSG00000157869.1083.88820194.13660-1.210506.279204.67780HepG2FASTKD2
RAB28ENSG00000157869.10183.68810349.22190-0.926906.481705.48740HepG2G3BP1
RAB28ENSG00000157869.10136.61010233.43690-0.773003.273002.16010HepG2GNB2L1
RAB28ENSG00000157869.1089.58070237.52550-1.406809.019107.90680HepG2GPKOW
RAB28ENSG00000157869.10145.73320353.73120-1.2793011.061209.74840HepG2HNRNPK
RAB28ENSG00000157869.10208.28810302.78860-0.539703.515202.76280HepG2HNRNPL
RAB28ENSG00000157869.10107.18920181.37720-0.758803.619702.54240HepG2HNRNPM
RAB28ENSG00000157869.10167.78750240.29340-0.518202.307301.64440HepG2IGF2BP1
RAB28ENSG00000157869.10124.61210333.18300-1.418906.126404.69310HepG2IGF2BP3
RAB28ENSG00000157869.10159.18560248.08020-0.640104.095203.21990HepG2ILF2
RAB28ENSG00000157869.10181.32400357.06040-0.977606.012304.47670HepG2KHSRP
RAB28ENSG00000157869.10147.95350443.92050-1.585204.280703.24240HepG2LARP4
RAB28ENSG00000157869.10220.24990376.64380-0.774105.041204.16470HepG2MAGOH
RAB28ENSG00000157869.10193.42390378.73700-0.969406.620005.67640HepG2MATR3
RAB28ENSG00000157869.10214.63290387.64620-0.852905.800304.89880HepG2NCBP2
RAB28ENSG00000157869.10250.63240345.16870-0.461702.179201.53330HepG2PABPC4
RAB28ENSG00000157869.10158.43310240.39610-0.601503.313402.39430HepG2PARN
RAB28ENSG00000157869.10181.93830339.27700-0.899008.153507.20240HepG2PCBP1
RAB28ENSG00000157869.1084.55170179.71770-1.087806.673805.53190HepG2PRPF4
RAB28ENSG00000157869.10252.97960345.24430-0.448602.651702.11430HepG2PTBP1
RAB28ENSG00000157869.10178.94610314.63730-0.814205.541804.73660HepG2PUF60
RAB28ENSG00000157869.10256.00760334.00180-0.383702.366801.81010HepG2PUM1
RAB28ENSG00000157869.10233.62980333.75750-0.514602.899802.21450HepG2PUM2
RAB28ENSG00000157869.1091.77940218.47090-1.251205.361004.39740HepG2RAVER1
RAB28ENSG00000157869.10194.29310353.35800-0.862906.855006.12540HepG2RBM22
RAB28ENSG00000157869.10286.31670384.20940-0.424302.364101.85670HepG2NELFE
RAB28ENSG00000157869.10257.66960357.86480-0.473902.800102.18010HepG2RECQL
RAB28ENSG00000157869.10123.09930205.46270-0.739103.571702.88280HepG2RPS19
RAB28ENSG00000157869.10130.43270206.19770-0.660702.607101.69580HepG2SERBP1
RAB28ENSG00000157869.10205.27260359.41300-0.808106.560505.71230HepG2SF3B4
RAB28ENSG00000157869.10139.44550279.20310-1.001602.713901.41990HepG2SNRNP200
RAB28ENSG00000157869.10300.02600399.10920-0.411702.474801.99150HepG2SRFBP1
RAB28ENSG00000157869.10233.21500310.65900-0.413702.177301.61470HepG2SRSF5
RAB28ENSG00000157869.10151.19080305.22510-1.013509.455608.54190HepG2SRSF9
RAB28ENSG00000157869.10230.66510353.30440-0.615104.574503.81140HepG2SUCLG1
RAB28ENSG00000157869.10129.18830325.38560-1.332703.984702.78800HepG2U2AF2
RAB28ENSG00000157869.10164.28480325.36570-0.985905.423604.23150HepG2UBE2L3
RAB28ENSG00000157869.10176.38080245.41960-0.476602.391201.73440HepG2UPF1
RAB28ENSG00000157869.10532.83710790.78250-0.569604.585503.86460K562AQR
RAB28ENSG00000157869.10346.87640506.77430-0.546902.350301.62150K562CPSF6
RAB28ENSG00000157869.10235.53260351.40710-0.577203.497202.46460K562EFTUD2
RAB28ENSG00000157869.10199.24780415.06350-1.0588011.8421010.17440K562EIF3G
RAB28ENSG00000157869.10309.39400457.42580-0.564104.026703.03810K562EIF4A3
RAB28ENSG00000157869.10273.49780384.66960-0.492103.097501.75580K562EXOSC5
RAB28ENSG00000157869.10314.04840444.04800-0.499703.267201.52360K562FASTKD2
RAB28ENSG00000157869.10435.64660555.85580-0.351602.422701.36230K562GLRX3
RAB28ENSG00000157869.10270.18200483.85710-0.840607.616606.29630K562GPKOW
RAB28ENSG00000157869.10322.31480478.09920-0.568803.949803.25210K562HNRNPC
RAB28ENSG00000157869.10564.92950743.81950-0.396902.244901.30290K562HNRNPL
RAB28ENSG00000157869.10445.64610614.60110-0.463802.660301.49920K562IGF2BP3
RAB28ENSG00000157869.10396.78370978.18220-1.301808.243304.75530K562LARP4
RAB28ENSG00000157869.10509.93720649.33540-0.348603.158002.36440K562NSUN2
RAB28ENSG00000157869.10515.21480769.12430-0.578002.465201.31720K562PABPC1
RAB28ENSG00000157869.10358.03780565.31270-0.658903.972102.79350K562PCBP2
RAB28ENSG00000157869.10345.69530489.29760-0.501202.878602.02920K562PCBP3
RAB28ENSG00000157869.10252.06700375.30210-0.574203.827302.87860K562POLR2G
RAB28ENSG00000157869.10770.476801065.06100-0.467104.352203.33440K562PUF60
RAB28ENSG00000157869.10575.29970767.64970-0.416101.900501.43440K562PUS1
RAB28ENSG00000157869.10368.52840592.02400-0.683903.979202.95410K562RBM22
RAB28ENSG00000157869.10449.24210622.95880-0.471602.409701.40300K562NELFE
RAB28ENSG00000157869.10233.27980334.42170-0.519602.753601.67390K562SAFB
RAB28ENSG00000157869.10404.48660686.60160-0.763402.673201.49880K562SF1
RAB28ENSG00000157869.10504.02870640.72190-0.346202.514601.73470K562SF3A3
RAB28ENSG00000157869.10402.80540544.39800-0.434603.264202.33350K562SF3B4
RAB28ENSG00000157869.10478.48770788.27800-0.720202.783601.55050K562SNRNP200
RAB28ENSG00000157869.10482.85570656.43280-0.443104.389103.23890K562SRPK2
RAB28ENSG00000157869.10365.63870612.39460-0.744003.884803.03980K562TARDBP
RAB28ENSG00000157869.10327.02650438.03850-0.421702.250401.41020K562TRIM56
RAB28ENSG00000157869.10400.43990524.13970-0.388402.637301.85200K562U2AF2
RAB28ENSG00000157869.10687.67180890.75210-0.373302.732701.87570K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RAB28 is not available on ENCORE database.





15 RBPs can affect the splicing of RAB28 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERAB28ENSG00000157869.10chr4-1342673313426851133831141338321813462322134624520.126000.000120.01713includedHepG2G3BP1
SERAB28ENSG00000157869.10chr4-1337341813373491133693481337027413378168133782460.077000.003160.05259includedK562SRSF1
SERAB28ENSG00000157869.10chr4-1337341813373491133693481337027413378168133782460.190000.000030.00064includedHepG2U2AF2
SERAB28ENSG00000157869.10chr4-134623221346245213383114133832181347594113475969-0.202000.000000.00001excludedK562AQR
SERAB28ENSG00000157869.10chr4-133781681337824613369347133702741338311413383218-0.057000.004630.04363excludedK562AQR
SERAB28ENSG00000157869.10chr4-1342673313426851133831141338321813462322134624520.086000.001770.06389includedHepG2MATR3
SERAB28ENSG00000157869.10chr4-133714941337158913369347133702741337816813378246-0.256000.000000.00008excludedK562HNRNPL
SERAB28ENSG00000157869.10chr4-133714941337158913369347133702741337816813378246-0.208000.000000.00007excludedHepG2SF3A3
SERAB28ENSG00000157869.10chr4-1342673313426851133831141338321813462322134624520.105000.001620.09095includedHepG2IGF2BP3
SERAB28ENSG00000157869.10chr4-134623221346245213383114133832181347594113475969-0.233000.001370.08488excludedHepG2TIAL1
SERAB28ENSG00000157869.10chr4-133714941337158913369347133702741337816813378246-0.189000.000160.00852excludedK562UTP18
SERAB28ENSG00000157869.10chr4-134623221346245213383114133832181347594113475969-0.120000.001790.03201excludedK562U2AF2
SERAB28ENSG00000157869.10chr4-133714941337158913369347133702741337816813378246-0.305000.000000.00000excludedK562TARDBP
SERAB28ENSG00000157869.10chr4-133714941337158913369347133702741337816813378246-0.160000.000130.00775excludedK562HNRNPU
SERAB28ENSG00000157869.10chr4-1337149413371589133693471337027413378168133782460.277000.000490.08468includedHepG2DDX55
SERAB28ENSG00000157869.10chr4-133714941337158913369347133702741337816813378246-0.189000.001390.05792excludedK562HNRNPK
SERAB28ENSG00000157869.10chr4-1348430413484373134810531348115013485699134859890.073000.001330.05005includedK562PTBP1
A3SSRAB28ENSG00000157869.10chr4-1337816813378318133781681337824613383114133832600.068000.000010.00007longerK562AQR
A3SSRAB28ENSG00000157869.10chr4-1348105313481230134810531348115013485699134859550.051000.004220.02492longerK562AQR
MXERAB28ENSG00000157869.10chr4-13462322134624521347594113476149133831141338321813481053134811500.163000.000000.000041includedK562AQR
MXERAB28ENSG00000157869.10chr4-13371494133715891337816813378246133693471337027413383114133832180.124000.000660.019731includedK562TARDBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RAB28 is not avaliable on ENCORE database.