PDRG1

General Information

Gene Name       : PDRG1
Gene ID             : ENSG00000088356.5
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: PDRG1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PDRG1ENSG00000088356.58.3412.2110.28ENCSR000AEF
HepG2PDRG1ENSG00000088356.516.4217.0316.73ENCSR985KAT
K562PDRG1ENSG00000088356.517.7415.7716.75ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PDRG1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PDRG1 RNA is bound by 10 proteins.  







eCLIP assay for PDRG1 is not avaliable on ENCORE database.





10 proteins are bound to PDRG1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr203053315630533251-3'-UTR,intron-Distal5.3761711.32637HepG2AKAP1
chr203053357630533626-3'-UTR,CDS,intron-Distal3.950083.12746HepG2GRWD1
chr203053307530533131-3'-UTR,intron-Distal6.1693414.45346K562UPF1
chr203053298130533046-3'-UTR,intron-Distal4.277658.49678HepG2AKAP1
chr203053339030533501-3'-UTR,intron-Distal3.706226.51800HepG2UPF1
chr203053298930533051-3'-UTR,intron-Distal4.2750517.96493K562UPF1
chr203053314730533255-3'-UTR,intron-Distal7.5256947.28379K562UPF1
chr203053314530533277-3'-UTR,intron-Distal5.6902712.73103HepG2UPF1
chr203053340330533464-3'-UTR,intron-Distal4.840116.64523HepG2AKAP1
chr203053333330533361-3'-UTR,intron-Distal5.271968.40676K562UPF1
chr203053967330539776-5'-UTR,CDS,intron-Distal3.042143.99208K562FTO
chr203053978030539811-5'-UTR,intron-Distal3.497424.08283K562DDX3X
chr203053971930539780-5'-UTR,CDS,intron-Distal3.9273813.58160K562DDX3X
chr203053431130534431-CDS,intron-Distal,intron-Proximal3.054085.60215HepG2AQR
chr203053807130538161-CDS,intron-Distal,intron-Proximal3.183714.22621HepG2PRPF8
chr203053963030539679-CDS,intron-Distal5.267147.02967HepG2PRPF8
chr203053656130536617-CDS,intron-Distal,intron-Proximal5.6824212.49766HepG2PRPF8
chr203053657130536616-CDS,intron-Distal,intron-Proximal4.285724.27476HepG2AQR
chr203053967730539719-CDS,intron-Distal4.115947.62404K562DDX3X
chr203053963530539685-CDS,intron-Distal4.942343.62536K562AQR
chr203053661530536667-CDS,intron-Distal4.120823.36385K562UCHL5
chr203053433530534372-CDS,intron-Distal3.920633.11168K562ZNF622
chr203053654330536600-intron-Distal,intron-Proximal5.527318.88118K562AQR
chr203053660030536611-intron-Distal,intron-Proximal5.181376.22530K562AQR
chr203053958730539645-intron-Distal5.213196.23414HepG2BUD13
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PDRG1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PDRG1 is not available on ENCORE database.

  • 62 RBPs can affect the levels of PDRG1.  








The Knockdown/knockout RNA-Seq assay for PDRG1 is not available on ENCORE database.





62 RBPs can affect the gene expression of PDRG1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PDRG1ENSG00000088356.4339.64140219.254700.631302.760201.81840HepG2ABCF1
PDRG1ENSG00000088356.4286.40430389.43640-0.443302.328401.50620HepG2BCLAF1
PDRG1ENSG00000088356.4229.47440141.226600.700203.316102.66770HepG2BOP1
PDRG1ENSG00000088356.4378.04830537.02120-0.506403.030502.22280HepG2CIRBP
PDRG1ENSG00000088356.4491.96930394.580400.318102.230201.62350HepG2CKAP4
PDRG1ENSG00000088356.4459.42580364.984900.331902.164801.42040HepG2DDX19B
PDRG1ENSG00000088356.4244.94660170.280900.524502.271801.35530HepG2DDX5
PDRG1ENSG00000088356.4357.84870540.40450-0.594703.820403.13100HepG2EIF2S1
PDRG1ENSG00000088356.4908.46140597.214500.605104.605703.78290HepG2EIF4A3
PDRG1ENSG00000088356.4379.89340517.76850-0.446702.505501.72910HepG2EIF4G2
PDRG1ENSG00000088356.4942.84980773.411600.285702.269401.71640HepG2ETF1
PDRG1ENSG00000088356.4623.71550385.654500.693505.538304.35360HepG2EWSR1
PDRG1ENSG00000088356.4212.04260144.134600.556802.165701.37900HepG2GEMIN5
PDRG1ENSG00000088356.4497.20550317.839200.645404.224502.96550HepG2GNB2L1
PDRG1ENSG00000088356.4330.07210215.532900.614803.493202.77770HepG2HNRNPA1
PDRG1ENSG00000088356.4371.93290224.840200.726003.923002.93000HepG2LARP4
PDRG1ENSG00000088356.41130.48850602.762500.9072010.970509.69160HepG2MAGOH
PDRG1ENSG00000088356.4442.28410568.96340-0.363402.555002.02550HepG2PTBP1
PDRG1ENSG00000088356.4362.30100616.16400-0.766108.402207.40300HepG2QKI
PDRG1ENSG00000088356.4986.86610646.421600.610307.355706.60580HepG2RBM22
PDRG1ENSG00000088356.4485.73490304.954600.671503.663002.44080HepG2RCC2
PDRG1ENSG00000088356.4535.53210347.827400.622504.715903.85560HepG2RPLP0
PDRG1ENSG00000088356.4657.84560224.391501.551603.856703.05490HepG2SF3A3
PDRG1ENSG00000088356.4245.95290138.798000.825304.342703.47610HepG2SF3B1
PDRG1ENSG00000088356.4374.31990497.28350-0.409802.963002.23930HepG2SLBP
PDRG1ENSG00000088356.41197.24020730.096300.7135014.2607013.35850HepG2SRFBP1
PDRG1ENSG00000088356.4360.94970503.01490-0.478804.108803.46100HepG2SRSF9
PDRG1ENSG00000088356.4785.32350633.873600.309002.591902.09000HepG2SSB
PDRG1ENSG00000088356.4596.81330438.710600.443901.913701.33690HepG2SUPV3L1
PDRG1ENSG00000088356.4334.50760555.77000-0.732407.887407.01900HepG2TAF15
PDRG1ENSG00000088356.4379.46020510.63900-0.428402.916002.06000HepG2TIA1
PDRG1ENSG00000088356.4369.94260231.413000.676704.966904.33710HepG2TIAL1
PDRG1ENSG00000088356.4449.11910189.309101.2463011.3411010.04700HepG2U2AF1
PDRG1ENSG00000088356.4668.30010401.615000.734604.063402.83660HepG2UPF2
PDRG1ENSG00000088356.4529.83880192.128201.4634024.7513023.23230HepG2UTP3
PDRG1ENSG00000088356.4715.86900536.028300.417302.574601.63230K562AKAP8
PDRG1ENSG00000088356.4676.53280507.586300.414402.919602.24860K562AKAP8L
PDRG1ENSG00000088356.42269.935001058.037401.1012010.601109.56300K562AQR
PDRG1ENSG00000088356.4124.05320217.51360-0.810104.353302.97190K562CCAR1
PDRG1ENSG00000088356.4393.97100555.26840-0.495103.450902.00940K562CIRBP
PDRG1ENSG00000088356.4651.43520413.980200.654008.083007.04640K562DDX47
PDRG1ENSG00000088356.4147.84500243.49560-0.719803.784502.18530K562DHX30
PDRG1ENSG00000088356.4682.03520450.214600.599104.812303.59420K562EFTUD2
PDRG1ENSG00000088356.4518.27240396.190100.387402.803902.00220K562EIF3G
PDRG1ENSG00000088356.4748.88420445.551900.749008.198106.78560K562EIF4A3
PDRG1ENSG00000088356.4842.26260463.354100.862104.591803.83930K562FXR1
PDRG1ENSG00000088356.4200.10180303.10460-0.599102.753402.04830K562G3BP2
PDRG1ENSG00000088356.4621.94620451.374000.462402.798001.37050K562GEMIN5
PDRG1ENSG00000088356.41568.24100903.345300.795708.496607.15800K562GRSF1
PDRG1ENSG00000088356.4427.52510255.578700.742102.145401.33160K562HNRNPM
PDRG1ENSG00000088356.4695.71490538.674600.369002.916802.06760K562KIF1C
PDRG1ENSG00000088356.41061.01680544.496500.9624015.9664013.80610K562MAGOH
PDRG1ENSG00000088356.4480.13150366.481400.389602.848802.02830K562MTPAP
PDRG1ENSG00000088356.4511.06880326.889300.644602.505201.57590K562PABPN1
PDRG1ENSG00000088356.4637.96150484.433700.397102.492101.56610K562PCBP2
PDRG1ENSG00000088356.41200.14060438.111501.4537027.1926024.85340K562PRPF8
PDRG1ENSG00000088356.4883.26170529.026100.739409.946508.74050K562PTBP1
PDRG1ENSG00000088356.41678.229701057.115100.666709.138807.64010K562PUF60
PDRG1ENSG00000088356.4746.49080503.383800.568404.426103.76220K562PUS1
PDRG1ENSG00000088356.4620.33260490.473700.338802.350701.79690K562RBM15
PDRG1ENSG00000088356.4782.97490507.173100.626406.163304.84400K562RBM22
PDRG1ENSG00000088356.4868.83290446.239600.9612010.132608.55570K562RPS19
PDRG1ENSG00000088356.4623.42830299.043101.059805.031703.25290K562SF1
PDRG1ENSG00000088356.4576.36790314.997800.8715010.659008.92690K562SF3B4
PDRG1ENSG00000088356.41069.85810518.642501.0445018.5578016.74750K562SRSF1
PDRG1ENSG00000088356.4519.99750377.590100.461603.409202.49840K562SYNCRIP
PDRG1ENSG00000088356.4663.93400524.855800.339001.948001.34760K562TARDBP
PDRG1ENSG00000088356.4637.27640506.294300.331802.063501.36430K562TIA1
PDRG1ENSG00000088356.4455.27280293.607100.632703.926002.57680K562U2AF1
PDRG1ENSG00000088356.4881.896001191.95020-0.434604.027602.95280K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PDRG1 is not available on ENCORE database.





1 RBPs can affect the splicing of PDRG1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSPDRG1ENSG00000088356.4chr20-3053661030536804305366103053668530538114305382840.346000.000000.00000longerK562AQR
A3SSPDRG1ENSG00000088356.4chr20-3053811430538306305381143053819030539677305398950.079000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PDRG1 is not avaliable on ENCORE database.