PACRGL

General Information

Gene Name       : PACRGL
Gene ID             : ENSG00000163138.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PACRGL)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PACRGLENSG00000163138.187.754.616.18ENCSR000AEF
HepG2PACRGLENSG00000163138.186.959.778.36ENCSR985KAT
K562PACRGLENSG00000163138.1818.9818.5018.74ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PACRGL is not avaliable on ENCORE database.



Proteins bound to RNA
  • PACRGL RNA is bound by 12 proteins.  







eCLIP assay for PACRGL is not avaliable on ENCORE database.





12 proteins are bound to PACRGL RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr42071497420715063+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.742869.87931HepG2U2AF2
chr42072989320730024+3'-UTR,intron-Distal,polyA_site3.527655.40624K562KHSRP
chr42072890720729023+3'-UTR,CDS,intron-Proximal3.033663.50044K562YBX3
chr42070213220702188+5'-UTR,intron-Distal,intron-Proximal3.974143.19625HepG2NCBP2
chr42070207720702132+5'-UTR,intron-Distal,intron-Proximal3.279623.28035HepG2NCBP2
chr42070216320702218+5'-UTR,intron-Distal,intron-Proximal3.056053.74019K562DDX3X
chr42070634520706434+CDS4.297644.16554HepG2PPIG
chr42070630220706446+CDS,intron-Proximal3.306924.74886HepG2BCLAF1
chr42075219720752257+intron-Distal3.635803.97268K562PTBP1
chr42071388420713930+intron-Distal5.391089.74894HepG2PTBP1
chr42071715720717260+intron-Distal4.473115.08856K562ILF3
chr42070587520706035+intron-Distal,intron-Proximal4.252835.19823K562KHSRP
chr42074643720746547+intron-Distal4.280504.84127HepG2CSTF2
chr42071388420713937+intron-Distal5.5295918.60841K562PTBP1
chr42071375820713819+intron-Distal3.913825.16181K562PTBP1
chr42070874720708863+intron-Distal4.170304.54401K562KHSRP
chr42070511620705184+intron-Distal4.033893.87294K562TARDBP
chr42071495920715050+intron-Distal,intron-Proximal4.509707.08280K562SF3B4
chr42071494620715040+intron-Distal,intron-Proximal4.685565.05386K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PACRGL is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PACRGL is not available on ENCORE database.

  • 44 RBPs can affect the levels of PACRGL.  








The Knockdown/knockout RNA-Seq assay for PACRGL is not available on ENCORE database.





44 RBPs can affect the gene expression of PACRGL :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PACRGLENSG00000163138.14277.7427094.394501.5569010.653309.67670HepG2AKAP1
PACRGLENSG00000163138.14141.79320204.71170-0.529802.378101.73320HepG2AUH
PACRGLENSG00000163138.1462.33740167.50570-1.426006.853705.80790HepG2CPSF6
PACRGLENSG00000163138.14165.7723087.741300.917804.100503.29020HepG2DDX21
PACRGLENSG00000163138.14137.1642080.344400.771502.185301.57130HepG2EIF4B
PACRGLENSG00000163138.14182.04270112.314600.696602.215001.52210HepG2FIP1L1
PACRGLENSG00000163138.1488.30120167.78030-0.926102.331201.40590HepG2FTO
PACRGLENSG00000163138.14136.9672083.251100.718202.246201.62050HepG2FXR1
PACRGLENSG00000163138.14106.34980189.89710-0.836403.407402.70260HepG2GPKOW
PACRGLENSG00000163138.1487.17650173.00990-0.988805.332504.37730HepG2HNRNPF
PACRGLENSG00000163138.1472.61230181.22080-1.319506.825605.88720HepG2HNRNPLL
PACRGLENSG00000163138.1485.28040170.36770-0.998404.991204.04570HepG2IGF2BP1
PACRGLENSG00000163138.14298.88760208.275900.521002.138701.41590HepG2LARP4
PACRGLENSG00000163138.14171.5545083.280101.042504.756203.90360HepG2MAGOH
PACRGLENSG00000163138.14164.5187083.749800.974003.809803.07920HepG2MATR3
PACRGLENSG00000163138.1475.54390160.67500-1.088804.296903.36990HepG2NSUN2
PACRGLENSG00000163138.14169.89320109.787500.629802.663801.82960HepG2PARN
PACRGLENSG00000163138.14135.3076083.554800.695302.210701.65710HepG2PCBP1
PACRGLENSG00000163138.14266.26550173.820000.615202.570401.99400HepG2PUM1
PACRGLENSG00000163138.14180.5440094.613800.932104.117203.48040HepG2NELFE
PACRGLENSG00000163138.14101.24010186.33820-0.880104.080103.27610HepG2RPLP0
PACRGLENSG00000163138.14153.8558081.560400.915503.773803.06610HepG2RPS19
PACRGLENSG00000163138.14177.17050115.185900.621102.901802.24490HepG2SMN1
PACRGLENSG00000163138.14221.7084092.393501.262708.307907.58910HepG2SRSF1
PACRGLENSG00000163138.1495.90550169.96820-0.825603.866703.06420HepG2SRSF7
PACRGLENSG00000163138.14121.43040192.63760-0.665803.386502.83200HepG2SSB
PACRGLENSG00000163138.1471.10380136.96730-0.945803.313802.58150HepG2SUPV3L1
PACRGLENSG00000163138.14104.88450176.59080-0.751603.008602.25680HepG2TARDBP
PACRGLENSG00000163138.14220.4990092.025901.260609.586108.58030HepG2UTP3
PACRGLENSG00000163138.14316.64970244.038900.375701.892001.40560K562AGGF1
PACRGLENSG00000163138.14284.80200383.81840-0.430502.390201.65640K562CPSF6
PACRGLENSG00000163138.141058.14090868.523800.284802.234201.35780K562CELF1
PACRGLENSG00000163138.14402.00790513.72330-0.353802.432401.81590K562DDX47
PACRGLENSG00000163138.14272.10980473.41150-0.798908.458507.30330K562EIF2S2
PACRGLENSG00000163138.14287.28870390.50770-0.442802.225901.45680K562FMR1
PACRGLENSG00000163138.14326.86760252.048300.374901.929201.40600K562FXR1
PACRGLENSG00000163138.14356.21860228.930600.637803.258302.48030K562G3BP2
PACRGLENSG00000163138.14250.54290366.45970-0.548603.141702.29810K562GPKOW
PACRGLENSG00000163138.14169.66700282.25220-0.734304.117703.40460K562HNRNPC
PACRGLENSG00000163138.14414.58200581.36700-0.487803.357002.48260K562HSPD1
PACRGLENSG00000163138.14462.99800335.013500.466703.206302.29700K562MAGOH
PACRGLENSG00000163138.14277.46120363.13790-0.388202.281401.54510K562MTPAP
PACRGLENSG00000163138.14321.83970403.50840-0.326302.006201.35870K562NSUN2
PACRGLENSG00000163138.14299.06210214.218100.481302.587401.81660K562POLR2G
PACRGLENSG00000163138.14186.94370276.34160-0.563802.167501.44840K562RPS19
PACRGLENSG00000163138.14312.95330214.872600.542403.168202.29000K562SYNCRIP
PACRGLENSG00000163138.14331.02190221.991100.576302.948701.81480K562U2AF1
PACRGLENSG00000163138.14325.05270229.241300.503702.982902.14880K562U2AF2
PACRGLENSG00000163138.14254.68450427.84620-0.748407.489106.37830K562UPF1
PACRGLENSG00000163138.14242.75030366.09830-0.592803.999402.94160K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PACRGL is not available on ENCORE database.





23 RBPs can affect the splicing of PACRGL :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPACRGLENSG00000163138.14chr4+2072643020726511207150542071516220728907207291250.370000.000060.01061includedHepG2G3BP1
SEPACRGLENSG00000163138.14chr4+2070942520709493207062822070643720715054207151620.220000.006850.09692includedK562SRSF1
SEPACRGLENSG00000163138.14chr4+207264302072651120715054207151622072890720729125-0.306000.007080.09913excludedHepG2U2AF1
SEPACRGLENSG00000163138.14chr4+207094252070949320706282207064372071505420715162-0.456000.002570.06425excludedK562AKAP8L
SEPACRGLENSG00000163138.14chr4+2072643020726511207150542071516220728907207291250.441000.000000.00001includedHepG2AKAP1
SEPACRGLENSG00000163138.14chr4+2072643020726511207150542071516220728907207291250.338000.000000.00845includedK562NONO
SEPACRGLENSG00000163138.14chr4+207113052071139620709425207094932071441020714545-0.087000.002890.02972excludedK562AQR
SEPACRGLENSG00000163138.14chr4+207264302072651120715054207151622072890720729020-0.089000.008620.07218excludedK562AQR
SEPACRGLENSG00000163138.14chr4+2072643020726511207150542071516220728907207291250.343000.000040.00324includedK562FXR1
SEPACRGLENSG00000163138.14chr4+2072643020726511207150542071516220728907207291250.419000.000000.00025includedHepG2DDX3X
SEPACRGLENSG00000163138.14chr4+207094252070949320706282207064372071505420715162-0.718000.000000.00000excludedK562PUS1
SEPACRGLENSG00000163138.14chr4+207264302072651120715054207151622072890720729125-0.195000.000080.00206excludedK562PUS1
SEPACRGLENSG00000163138.14chr4+2072643020726511207150542071516220728907207291250.510000.000000.00012includedHepG2MATR3
SEPACRGLENSG00000163138.14chr4+207094252070949320706282207064372071441020714545-0.368000.006090.09401excludedK562U2AF1
SEPACRGLENSG00000163138.14chr4+207264302072651120715054207151622072890720729125-0.153000.000020.00065excludedK562U2AF1
SEPACRGLENSG00000163138.14chr4+207037632070384420702041207022402070608820706156-0.527000.003250.07621excludedHepG2SF3A3
SEPACRGLENSG00000163138.14chr4+2072643020726511207150542071516220728907207291250.631000.000000.00000includedHepG2IGF2BP3
SEPACRGLENSG00000163138.14chr4+2072643020726511207150542071516220728907207291250.198000.000010.00777includedK562PUM2
SEPACRGLENSG00000163138.14chr4+2072643020726511207150542071516220728907207291250.196000.000000.00185includedK562EIF4G2
SEPACRGLENSG00000163138.14chr4+207037632070384420702081207023292070608820706156-0.377000.002480.06673excludedK562UTP18
SEPACRGLENSG00000163138.14chr4+207094252070949320706282207064372071505420715162-0.387000.004050.09545excludedK562UTP18
SEPACRGLENSG00000163138.14chr4+207264302072651120715054207151622072890720729125-0.139000.000110.00300excludedK562U2AF2
SEPACRGLENSG00000163138.14chr4+2072643020726511207150542071516220728907207291250.278000.000000.00023includedK562TARDBP
SEPACRGLENSG00000163138.14chr4+207094252070949320706282207064372071505420715162-0.466000.000710.02106excludedK562RBM15
SEPACRGLENSG00000163138.14chr4+207037632070384420702103207022012070608820706156-0.298000.002920.06257excludedK562AGGF1
SEPACRGLENSG00000163138.14chr4+207094252070949320706282207064372071505420715162-0.467000.000270.00991excludedK562AGGF1
SEPACRGLENSG00000163138.14chr4+207264302072651120715054207151622072890720729125-0.160000.000660.01992excludedK562AGGF1
SEPACRGLENSG00000163138.14chr4+2070376320703844207020802070241020706088207061560.376000.000020.00053includedK562HNRNPC
SEPACRGLENSG00000163138.14chr4+2072043820720599207150542071516220726430207265020.334000.001540.02740includedK562HNRNPC
SEPACRGLENSG00000163138.14chr4+207264302072651120715054207151622072890720729125-0.286000.000000.00000excludedK562HNRNPC
A5SSPACRGLENSG00000163138.14chr4+207020812070241020702081207023292070608820706156-0.365000.000000.00038shorterK562UTP18
A5SSPACRGLENSG00000163138.14chr4+207020812070241020702081207022402070608820706156-0.447000.000280.03954shorterHepG2FTO
MXEPACRGLENSG00000163138.14chr4+2070942520709493207144102071454520706282207064372071505420715162-0.184000.000660.006312includedK562AQR
MXEPACRGLENSG00000163138.14chr4+2070942520709493207143802071454520706328207064372071505420715162-0.153000.005910.041382includedK562AQR
MXEPACRGLENSG00000163138.14chr4+2071130520711396207144102071454520706282207064372071505420715162-0.115000.014290.084252includedK562AQR
MXEPACRGLENSG00000163138.14chr4+2071505420715162207264302072651120706282207064372072890720729020-0.190000.000040.015282includedK562EIF4G2
MXEPACRGLENSG00000163138.14chr4+2071505420715162207264302072651120706282207064372072890720729020-0.168000.000400.077152includedK562PUM2
MXEPACRGLENSG00000163138.14chr4+2070942520709493207264302072651120706282207064372072890720729020-0.209000.000160.051372includedK562APOBEC3C

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PACRGL is not avaliable on ENCORE database.