NUBP1

General Information

Gene Name       : NUBP1
Gene ID             : ENSG00000103274.10
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: NUBP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NUBP1ENSG00000103274.1032.5445.5039.02ENCSR000AEF
HepG2NUBP1ENSG00000103274.1063.6453.9058.77ENCSR985KAT
K562NUBP1ENSG00000103274.1029.8229.7429.78ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NUBP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NUBP1 RNA is bound by 3 proteins.  







eCLIP assay for NUBP1 is not avaliable on ENCORE database.





3 proteins are bound to NUBP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr161085532710855375+CDS,intron-Proximal4.153906.79646HepG2PRPF8
chr161084294410843087+intron-Distal3.117313.58583HepG2HNRNPL
chr161085575410855851+intron-Distal,intron-Proximal3.788083.14375HepG2RBFOX2
chr161085681710856875+intron-Distal3.294073.98726HepG2RBFOX2
chr161085666110856791+intron-Distal4.2267713.43472HepG2RBFOX2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NUBP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NUBP1 is not available on ENCORE database.

  • 63 RBPs can affect the levels of NUBP1.  








The Knockdown/knockout RNA-Seq assay for NUBP1 is not available on ENCORE database.





63 RBPs can affect the gene expression of NUBP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NUBP1ENSG00000103274.6622.59190876.00350-0.492602.882801.88730HepG2CCAR1
NUBP1ENSG00000103274.6616.50900491.563200.326602.281201.35870HepG2YBX3
NUBP1ENSG00000103274.6721.66140925.22070-0.358502.098001.54510HepG2DDX3X
NUBP1ENSG00000103274.6591.63730794.81800-0.425902.404501.82530HepG2DDX6
NUBP1ENSG00000103274.6604.34820482.718800.324102.287901.64330HepG2DNAJC21
NUBP1ENSG00000103274.6648.76090829.90260-0.355302.108901.39120HepG2EIF4G2
NUBP1ENSG00000103274.6878.177201049.22300-0.256702.322001.76280HepG2ETF1
NUBP1ENSG00000103274.6271.02400516.56120-0.9305010.025008.09300HepG2FASTKD2
NUBP1ENSG00000103274.6548.33200707.10000-0.366902.339401.61310HepG2FUBP3
NUBP1ENSG00000103274.6595.99170790.28720-0.407102.397001.77490HepG2G3BP1
NUBP1ENSG00000103274.6645.97440807.01440-0.321102.409701.53000HepG2HNRNPA2B1
NUBP1ENSG00000103274.6794.56790538.476800.561207.367606.41580HepG2HNRNPU
NUBP1ENSG00000103274.6471.81970808.00030-0.776105.908704.39190HepG2KHSRP
NUBP1ENSG00000103274.6621.96490857.01470-0.462502.858002.21760HepG2MATR3
NUBP1ENSG00000103274.6672.82250877.19570-0.382702.198801.63230HepG2NCBP2
NUBP1ENSG00000103274.6609.21150781.16970-0.358701.988001.36760HepG2PABPC4
NUBP1ENSG00000103274.6640.45020841.66580-0.394203.948803.25060HepG2PCBP1
NUBP1ENSG00000103274.6592.88950480.281700.303802.045401.40310HepG2PPIL4
NUBP1ENSG00000103274.6519.42230856.46780-0.7215010.814209.86880HepG2PTBP1
NUBP1ENSG00000103274.6495.40760655.99170-0.405103.899603.19330HepG2PUS1
NUBP1ENSG00000103274.6739.83530927.48760-0.326102.511601.91140HepG2QKI
NUBP1ENSG00000103274.6570.09790953.13200-0.7415011.4859010.52810HepG2NELFE
NUBP1ENSG00000103274.6656.21890887.77530-0.436004.607003.83950HepG2RECQL
NUBP1ENSG00000103274.6603.27310479.548900.331002.632102.00140HepG2SAFB2
NUBP1ENSG00000103274.6714.91380560.138600.351902.068101.45200HepG2SF3B1
NUBP1ENSG00000103274.6634.06330891.61930-0.491805.688704.89170HepG2SF3B4
NUBP1ENSG00000103274.6301.11580757.19020-1.3303030.4807029.02690HepG2SRSF9
NUBP1ENSG00000103274.6575.49300836.62260-0.539805.875705.11060HepG2TAF15
NUBP1ENSG00000103274.61056.78290666.948500.663906.007805.09830HepG2U2AF1
NUBP1ENSG00000103274.6606.88350726.45460-0.259501.998501.38840HepG2UPF1
NUBP1ENSG00000103274.6732.06540494.286300.566503.702002.87160HepG2XRN2
NUBP1ENSG00000103274.6528.55120407.269600.376002.293401.76880K562AGGF1
NUBP1ENSG00000103274.6584.83980444.672000.395203.283602.28170K562ATP5C1
NUBP1ENSG00000103274.6482.72030353.533600.449202.436001.62270K562BOP1
NUBP1ENSG00000103274.6426.15230293.805300.536403.425801.98840K562CIRBP
NUBP1ENSG00000103274.6827.75590548.070100.594702.987401.87820K562CNOT7
NUBP1ENSG00000103274.6730.72950542.587400.429403.862202.54820K562CPEB4
NUBP1ENSG00000103274.6860.77960561.572000.616108.855407.77250K562DDX47
NUBP1ENSG00000103274.6592.47970455.981300.377703.119702.18170K562DKC1
NUBP1ENSG00000103274.6324.52140219.199100.566003.556502.66040K562EIF3G
NUBP1ENSG00000103274.6422.78240308.925400.452602.565101.77570K562EIF4A3
NUBP1ENSG00000103274.6113.33240234.50530-1.049106.651304.09270K562FASTKD2
NUBP1ENSG00000103274.6690.64970426.285600.696006.738905.36740K562FIP1L1
NUBP1ENSG00000103274.6441.01660321.266600.457003.065702.43320K562FXR1
NUBP1ENSG00000103274.6113.27140248.51770-1.133606.770305.55570K562G3BP2
NUBP1ENSG00000103274.6537.10030358.868600.581604.315103.32960K562GPKOW
NUBP1ENSG00000103274.6994.02010756.429300.394003.113602.31370K562GRSF1
NUBP1ENSG00000103274.6659.46650507.473600.377902.604101.58170K562HNRNPL
NUBP1ENSG00000103274.6521.73990350.639500.573203.596802.52370K562HNRNPM
NUBP1ENSG00000103274.6827.74220577.933800.518204.181303.20970K562HSPD1
NUBP1ENSG00000103274.6410.35400274.175400.581703.070801.96900K562IGF2BP2
NUBP1ENSG00000103274.6627.71050503.804600.317102.252101.44580K562MBNL1
NUBP1ENSG00000103274.6536.19680350.301700.614104.871803.69020K562METAP2
NUBP1ENSG00000103274.6763.22390526.536900.535502.446001.30390K562PABPC1
NUBP1ENSG00000103274.6285.89450544.67930-0.929908.165706.73760K562PCBP3
NUBP1ENSG00000103274.6204.40480417.78610-1.0313010.449108.93770K562POLR2G
NUBP1ENSG00000103274.6782.21690483.938000.692606.871505.47750K562PPIG
NUBP1ENSG00000103274.6519.96280323.564300.684304.835703.84740K562PRPF8
NUBP1ENSG00000103274.6377.54930279.914400.431602.549701.90790K562PTBP1
NUBP1ENSG00000103274.6503.80870409.495100.298901.833001.33270K562RBM15
NUBP1ENSG00000103274.6449.68100329.532600.448402.142301.42820K562RPS19
NUBP1ENSG00000103274.6717.02400533.310300.426903.784702.83920K562SF3A3
NUBP1ENSG00000103274.6542.99950274.414300.9845011.322409.90200K562SRSF1
NUBP1ENSG00000103274.6400.37150277.714700.527603.150102.39480K562TARDBP
NUBP1ENSG00000103274.6367.65630267.889900.456602.640601.84200K562TIA1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NUBP1 is not available on ENCORE database.





18 RBPs can affect the splicing of NUBP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENUBP1ENSG00000103274.6chr16+1086180510861889108556131085571610862903108631700.113000.001640.03112includedK562SRSF1
SENUBP1ENSG00000103274.6chr16+108556131085571610855220108553311086180510861889-0.350000.000000.00000excludedK562SRSF1
SENUBP1ENSG00000103274.6chr16+108618051086188910855613108557161086290310863170-0.121000.003340.09104excludedK562PRPF8
SENUBP1ENSG00000103274.6chr16+108618051086188910855613108557161086290310863170-0.068000.001060.03321excludedK562AKAP8L
SENUBP1ENSG00000103274.6chr16+108464661084653510840999108411331084957710849610-0.071000.000180.00327excludedHepG2U2AF2
SENUBP1ENSG00000103274.6chr16+108556131085571610855165108553311086180510861889-0.115000.000420.00586excludedK562AQR
SENUBP1ENSG00000103274.6chr16+108464661084653510840999108411331084957710849610-0.116000.000000.00037excludedHepG2SRSF7
SENUBP1ENSG00000103274.6chr16+108464661084653510840999108411331085054610850637-0.066000.005740.06909excludedK562PUS1
SENUBP1ENSG00000103274.6chr16+1086180510861889108556131085571610862903108631700.072000.000200.02078includedHepG2IGF2BP3
SENUBP1ENSG00000103274.6chr16+108464661084653510840999108411331084957710849610-0.076000.003520.09705excludedK562HNRNPU
SENUBP1ENSG00000103274.6chr16+108464661084653510840999108411331084957710849610-0.096000.000320.01790excludedHepG2HNRNPU
MXENUBP1ENSG00000103274.6chr16+10840999108411331084646610846535108377011083773910849577108496100.177000.000240.006771includedHepG2U2AF1
MXENUBP1ENSG00000103274.6chr16+1083781710837922108409991084113310837642108377391084957710849610-0.088000.002190.038872includedHepG2U2AF1
MXENUBP1ENSG00000103274.6chr16+10840999108411331084646610846535108378171083792210849577108496100.257000.000030.002181includedK562UCHL5
MXENUBP1ENSG00000103274.6chr16+10840999108411331084646610846535108378171083792210849577108496100.277000.000000.000241includedK562XRN2
MXENUBP1ENSG00000103274.6chr16+1085561310855716108618051086188910855220108553311086290310863208-0.294000.000000.000032includedK562SRSF1
MXENUBP1ENSG00000103274.6chr16+10855165108553311086180510861889108517291085188410862903108632080.056000.001760.014861includedK562AQR
MXENUBP1ENSG00000103274.6chr16+10840999108411331084646610846535108378171083792210849577108496100.271000.000040.003491includedHepG2XPO5
MXENUBP1ENSG00000103274.6chr16+10840999108411331084646610846535108378171083792210849577108496100.202000.000000.000501includedHepG2BCCIP
MXENUBP1ENSG00000103274.6chr16+10840999108411331084646610846535108378171083792210849577108496100.230000.000000.000001includedHepG2DDX55
MXENUBP1ENSG00000103274.6chr16+1084099910841133108464661084653510837817108379221085054610850637-0.089000.007220.079972includedHepG2HNRNPUL1
MXENUBP1ENSG00000103274.6chr16+10846466108465351085054610850637108409991084113310851729108518840.102000.000530.083791includedK562PUM2
MXENUBP1ENSG00000103274.6chr16+10840999108411331084646610846535108378171083792210849577108496100.262000.000420.015871includedHepG2HNRNPU
MXENUBP1ENSG00000103274.6chr16+10840999108411331084646610846535108378171083792210849577108496100.221000.000000.000151includedHepG2SUPV3L1
MXENUBP1ENSG00000103274.6chr16+10837817108379221084099910841133108376971083773910846466108465350.279000.000000.000001includedHepG2SUPV3L1
MXENUBP1ENSG00000103274.6chr16+10837817108379221084099910841133108377011083773910846466108465350.254000.000000.000041includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NUBP1 is not avaliable on ENCORE database.