NDFIP1

General Information

Gene Name       : NDFIP1
Gene ID             : ENSG00000131507.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NDFIP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NDFIP1ENSG00000131507.100.780.650.72ENCSR000AEF
HepG2NDFIP1ENSG00000131507.106.8115.6411.22ENCSR985KAT
K562NDFIP1ENSG00000131507.1018.6619.9919.32ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NDFIP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NDFIP1 RNA is bound by 19 proteins.  







eCLIP assay for NDFIP1 is not avaliable on ENCORE database.





19 proteins are bound to NDFIP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5141531576141531638+3'-UTR3.333938.78304K562PABPC4
chr5141531568141531632+3'-UTR4.304514.23960HepG2TIAL1
chr5141531501141531555+3'-UTR3.691334.59124HepG2FUBP3
chr5141531801141531833+3'-UTR3.095585.07082K562FAM120A
chr5141532077141532156+3'-UTR3.574887.57449HepG2UPF1
chr5141531682141531758+3'-UTR3.3490112.43148K562PUM2
chr5141532072141532152+3'-UTR4.4948828.98330K562FAM120A
chr5141531893141531940+3'-UTR4.6060816.54613K562UPF1
chr5141531694141531770+3'-UTR3.8892116.86560K562FAM120A
chr5141532152141532234+3'-UTR4.1166233.19571K562FAM120A
chr5141532254141532282+3'-UTR4.263557.12652K562UPF1
chr5141531581141531631+3'-UTR4.763197.81068HepG2DDX55
chr5141532149141532254+3'-UTR3.6633024.30122K562UPF1
chr5141532251141532374+3'-UTR3.7342730.46924K562PUM2
chr5141531897141531956+3'-UTR4.5403818.89396K562FAM120A
chr5141531856141531889+3'-UTR4.226667.83400K562UPF1
chr5141531728141531794+3'-UTR4.0925714.48458K562UPF1
chr5141531573141531625+3'-UTR3.928493.64119HepG2UPF1
chr5141531803141531825+3'-UTR5.067927.21253K562UPF1
chr5141532130141532149+3'-UTR3.391178.63173K562UPF1
chr5141531578141531645+3'-UTR3.049178.12412K562DDX6
chr5141531237141531315+3'-UTR,intron-Proximal5.200717.36555K562SF3B4
chr5141488535141488602+5'-UTR,CDS3.446185.90734HepG2DDX3X
chr5141488353141488447+5'-UTR5.2763114.31986K562DDX3X
chr5141488447141488504+5'-UTR4.028938.16459K562DDX3X
chr5141488361141488429+5'-UTR4.045125.84843HepG2DDX3X
chr5141488382141488430+5'-UTR3.083673.07461K562DROSHA
chr5141488459141488535+5'-UTR4.696148.20930HepG2DDX3X
chr5141524135141524188+CDS,intron-Proximal3.122024.67724K562SND1
chr5141511851141511908+CDS,intron-Distal,intron-Proximal4.251183.69113K562LIN28B
chr5141511457141511541+CDS,intron-Proximal5.090315.17615K562AQR
chr5141520127141520144+CDS,intron-Proximal4.113713.02572K562SND1
chr5141515376141515424+CDS,intron-Proximal3.288113.18246K562PRPF8
chr5141520146141520179+CDS4.517395.22159K562SND1
chr5141495944141495987+intron-Distal4.648567.56720K562PTBP1
chr5141517815141517902+intron-Distal4.381287.72109HepG2U2AF2
chr5141517585141517696+intron-Distal3.002075.88516K562KHSRP
chr5141498639141498767+intron-Distal4.029844.93238K562QKI
chr5141523731141523833+intron-Distal3.140153.17926K562KHSRP
chr5141517823141517890+intron-Distal3.491335.75558K562U2AF2
chr5141520030141520072+intron-Proximal3.419185.36888K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NDFIP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NDFIP1 is not available on ENCORE database.

  • 62 RBPs can affect the levels of NDFIP1.  








The Knockdown/knockout RNA-Seq assay for NDFIP1 is not available on ENCORE database.





62 RBPs can affect the gene expression of NDFIP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NDFIP1ENSG00000131507.9568.75250902.60780-0.6663011.3241010.26970HepG2ACO1
NDFIP1ENSG00000131507.91648.632801434.461100.200701.907001.31750HepG2AUH
NDFIP1ENSG00000131507.91221.33960980.753200.316402.625701.87360HepG2CALR
NDFIP1ENSG00000131507.91673.242201207.835700.470105.170804.34150HepG2CELF1
NDFIP1ENSG00000131507.9915.76160696.705300.394302.899202.20620HepG2DDX21
NDFIP1ENSG00000131507.9851.56650681.456100.321402.174701.37570HepG2DDX24
NDFIP1ENSG00000131507.9989.98750641.290400.626304.579403.14580HepG2AGO1
NDFIP1ENSG00000131507.91033.840701523.87570-0.559705.224304.42480HepG2EIF2S1
NDFIP1ENSG00000131507.91001.331001684.07980-0.750007.815806.74240HepG2EIF4A3
NDFIP1ENSG00000131507.91047.884601699.11130-0.697308.023606.89320HepG2FXR1
NDFIP1ENSG00000131507.91152.608501576.20360-0.451603.432002.69500HepG2G3BP1
NDFIP1ENSG00000131507.91246.160101673.30470-0.425203.477302.47170HepG2G3BP2
NDFIP1ENSG00000131507.9609.93780931.17760-0.610406.040605.04410HepG2HNRNPC
NDFIP1ENSG00000131507.9798.837901595.98190-0.9985016.5559014.99650HepG2HNRNPK
NDFIP1ENSG00000131507.91013.458001183.18330-0.223402.344601.71740HepG2HNRNPL
NDFIP1ENSG00000131507.91249.944301602.18680-0.358202.536501.88780HepG2IGF2BP2
NDFIP1ENSG00000131507.91864.731101283.559900.538704.041703.03450HepG2LARP4
NDFIP1ENSG00000131507.91223.889001699.70430-0.473803.950403.16700HepG2MAGOH
NDFIP1ENSG00000131507.91063.734901709.22620-0.684206.800005.84480HepG2MATR3
NDFIP1ENSG00000131507.91331.561201749.49530-0.393802.823502.18370HepG2NCBP2
NDFIP1ENSG00000131507.9942.062601558.07280-0.725908.177006.94980HepG2PABPC4
NDFIP1ENSG00000131507.9957.478201467.83540-0.6164012.3889011.25370HepG2PCBP1
NDFIP1ENSG00000131507.91190.04730864.312800.461302.462601.48110HepG2PCBP2
NDFIP1ENSG00000131507.91067.19250675.468400.659806.609105.42210HepG2PRPF8
NDFIP1ENSG00000131507.91088.169401493.53740-0.456806.889206.10310HepG2PTBP1
NDFIP1ENSG00000131507.91705.587001305.023800.386106.172105.35900HepG2PUM1
NDFIP1ENSG00000131507.91081.967301617.62320-0.580209.272908.22630HepG2QKI
NDFIP1ENSG00000131507.91842.262001376.514500.420406.162505.46380HepG2RBM22
NDFIP1ENSG00000131507.91196.211401662.19700-0.474607.866407.03690HepG2NELFE
NDFIP1ENSG00000131507.91071.879801548.05020-0.530309.549508.50600HepG2RECQL
NDFIP1ENSG00000131507.91179.06760893.584400.399902.245701.63730HepG2SF3A3
NDFIP1ENSG00000131507.9636.30770849.99490-0.417702.200801.35660HepG2SMNDC1
NDFIP1ENSG00000131507.91116.41590779.538500.518102.484501.34900HepG2SUB1
NDFIP1ENSG00000131507.91216.010201380.47360-0.183001.949501.41080HepG2SUCLG1
NDFIP1ENSG00000131507.91264.82200871.504500.537304.502803.67070HepG2SUPV3L1
NDFIP1ENSG00000131507.91105.044201458.81760-0.400704.187703.51950HepG2TAF15
NDFIP1ENSG00000131507.9706.82130906.86290-0.359503.831703.19060HepG2TRIM56
NDFIP1ENSG00000131507.9953.85630654.101600.544208.454107.38740HepG2ZC3H8
NDFIP1ENSG00000131507.91123.19370871.569300.365805.073904.38870HepG2ZNF622
NDFIP1ENSG00000131507.92933.320202100.508300.4817010.928109.89360K562AGGF1
NDFIP1ENSG00000131507.92823.839102293.296000.300103.779102.69810K562ATP5C1
NDFIP1ENSG00000131507.91192.991301841.58980-0.626402.827002.03630K562CPSF6
NDFIP1ENSG00000131507.91532.224002040.80330-0.413506.932805.96620K562DDX47
NDFIP1ENSG00000131507.92985.536402351.945800.344005.172103.92070K562DKC1
NDFIP1ENSG00000131507.9933.148901492.82370-0.6779010.167908.63720K562EIF3G
NDFIP1ENSG00000131507.9982.318301570.27590-0.676804.162403.15650K562EIF4A3
NDFIP1ENSG00000131507.91419.770001097.028200.372002.627501.53470K562FKBP4
NDFIP1ENSG00000131507.9769.599701263.74770-0.715509.849808.77970K562HNRNPC
NDFIP1ENSG00000131507.91785.268001222.354800.546404.886903.61010K562HNRNPM
NDFIP1ENSG00000131507.92660.020302015.203900.400402.291501.56280K562HSPD1
NDFIP1ENSG00000131507.93084.356902319.548300.411004.785903.64710K562KIF1C
NDFIP1ENSG00000131507.92826.491202220.376300.348103.320302.11130K562MAK16
NDFIP1ENSG00000131507.91606.093802154.94160-0.424104.986003.70450K562MATR3
NDFIP1ENSG00000131507.92562.303601821.345800.492302.655401.79400K562NAA15
NDFIP1ENSG00000131507.9930.737401205.21790-0.372802.480501.69340K562PCBP3
NDFIP1ENSG00000131507.9721.01820924.40670-0.358502.921302.09750K562POLR2G
NDFIP1ENSG00000131507.91381.805501078.086600.358002.730101.98590K562PRPF8
NDFIP1ENSG00000131507.9872.237301133.07160-0.377402.814001.90070K562PSIP1
NDFIP1ENSG00000131507.94124.661202967.807500.474803.627102.39590K562PUM1
NDFIP1ENSG00000131507.93235.655302167.593800.577907.278106.44440K562PUS1
NDFIP1ENSG00000131507.92683.175402111.989000.345204.631603.88430K562RBM15
NDFIP1ENSG00000131507.91513.675802011.87710-0.410504.012302.98320K562RBM22
NDFIP1ENSG00000131507.91454.329602259.35400-0.635602.605001.35720K562SFPQ
NDFIP1ENSG00000131507.91608.011202056.43380-0.354903.570102.77380K562SRSF1
NDFIP1ENSG00000131507.91530.515202081.40910-0.443504.227503.34640K562TARDBP
NDFIP1ENSG00000131507.91658.676702007.71110-0.275502.503501.72990K562TIA1
NDFIP1ENSG00000131507.91810.814301529.140300.243802.870302.13830K562UPF1
NDFIP1ENSG00000131507.91718.812602824.54620-0.7166013.0737010.56680K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NDFIP1 is not available on ENCORE database.





4 RBPs can affect the splicing of NDFIP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENDFIP1ENSG00000131507.9chr5+141517298141517423141515294141515382141520127141520194-0.057000.002200.03951excludedHepG2U2AF1
A5SSNDFIP1ENSG00000131507.9chr5+141517298141517423141517298141517365141524135141524241-0.115000.000270.03933shorterK562SUPV3L1
MXENDFIP1ENSG00000131507.9chr5+141520127141520194141524135141524241141517298141517423141531295141534005-0.102000.006100.090142includedHepG2SRSF1
MXENDFIP1ENSG00000131507.9chr5+1415152681415153821415200961415201941415117761415119071415241351415242410.066000.000000.000001includedK562AQR
MXENDFIP1ENSG00000131507.9chr5+1415152681415153821415201271415201941415117761415119071415241351415242410.056000.000000.000001includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NDFIP1 is not avaliable on ENCORE database.