LSM1

General Information

Gene Name       : LSM1
Gene ID             : ENSG00000175324.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LSM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LSM1ENSG00000175324.930.4832.6731.58ENCSR000AEF
HepG2LSM1ENSG00000175324.929.8438.3234.08ENCSR985KAT
K562LSM1ENSG00000175324.945.2041.2743.23ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
LSM1293TshRNALSM1-BG293LV05-21,LSM1-BG293LV05-22NT-BG293LV05-1,NT-BG293LV05-2,SubmittingENCORE2
LSM1293TshRNABG293LV05-23,BG293LV05-24BG293LV05-1,BG293LV05-2NotSatisfiedENCORE2
LSM1293TshRNALSM1-BG293LV06-61,LSM1-BG293LV06-62NT-BG293LV06-1,NT-BG293LV06-2,SequencedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LSM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LSM1 RNA is bound by 12 proteins.  







eCLIP assay for LSM1 is not avaliable on ENCORE database.





12 proteins are bound to LSM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr83802087038020926-3'-UTR,intron-Distal,intron-Proximal,polyA_signal3.508965.90074K562PUM2
chr83802121238021314-3'-UTR,CDS,intron-Distal3.310124.58459K562GRWD1
chr83802122638021391-3'-UTR,CDS,intron-Distal3.574993.96535HepG2AQR
chr83802128038021357-3'-UTR,CDS,intron-Distal3.322814.08171K562YBX3
chr83802087138020970-3'-UTR,intron-Distal,intron-Proximal,polyA_signal3.415044.53184K562IGF2BP1
chr83803379438033844-5'-UTR,CDS,intron-Distal5.0816014.31986K562DDX3X
chr83803389838033958-5'-UTR,intron-Distal4.681275.48791HepG2DDX3X
chr83803384438033898-5'-UTR,intron-Distal5.9451116.59654K562DDX3X
chr83803389838033976-5'-UTR,intron-Distal4.8115915.40823K562DDX3X
chr83803415138034219-5'-UTR,intron-Distal,intron-Proximal4.181664.10386HepG2NCBP2
chr83802950238029566-CDS,intron-Distal,intron-Proximal3.645823.16095HepG2U2AF2
chr83803125938031335-intron-Distal4.764594.40847HepG2PTBP1
chr83803117738031296-intron-Distal3.182273.35377HepG2QKI
chr83803127638031361-intron-Distal3.896753.33944K562MATR3
chr83803144138031551-intron-Distal4.152233.98115K562MATR3
chr83803103438031150-intron-Distal3.312686.46897HepG2HNRNPL
chr83803200238032064-intron-Distal4.5738010.85680HepG2QKI
chr83803149238031558-intron-Distal5.046804.90095K562PTBP1
chr83803142038031489-intron-Distal4.758556.42900HepG2PTBP1
chr83803141638031492-intron-Distal5.517056.90462K562PTBP1
chr83803200338032111-intron-Distal3.849647.21090K562QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LSM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LSM1 is not available on ENCORE database.

  • 53 RBPs can affect the levels of LSM1.  








The Knockdown/knockout RNA-Seq assay for LSM1 is not available on ENCORE database.





53 RBPs can affect the gene expression of LSM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LSM1ENSG00000175324.5419.80130261.261700.684106.682305.82100HepG2ACO1
LSM1ENSG00000175324.5679.34390458.810100.566103.447602.86270HepG2AKAP1
LSM1ENSG00000175324.5553.90340379.623900.545003.468302.58910HepG2ASCC1
LSM1ENSG00000175324.5657.41260455.370500.529705.541004.62690HepG2AUH
LSM1ENSG00000175324.5720.69220423.820500.765808.038207.08220HepG2BOP1
LSM1ENSG00000175324.5181.79390389.10270-1.097809.317008.12770HepG2CPSF6
LSM1ENSG00000175324.5493.99780368.493500.422803.109902.43640HepG2CELF1
LSM1ENSG00000175324.5362.37780223.367700.698004.565903.71920HepG2DDX21
LSM1ENSG00000175324.5589.41930439.499100.423302.296401.72140HepG2DDX3X
LSM1ENSG00000175324.5421.64550302.680700.478102.750001.97890HepG2DDX55
LSM1ENSG00000175324.5501.91010377.553500.410601.951001.42450HepG2DDX6
LSM1ENSG00000175324.5300.99180205.612200.549702.344901.33270HepG2AGO1
LSM1ENSG00000175324.5744.98710522.824600.510806.012605.18390HepG2ETF1
LSM1ENSG00000175324.5468.22740364.145700.362602.237701.38790HepG2HNRNPA2B1
LSM1ENSG00000175324.5301.68520420.95850-0.480602.425301.83050HepG2HNRNPLL
LSM1ENSG00000175324.5336.05620236.315100.507902.647901.53840HepG2LARP7
LSM1ENSG00000175324.5271.44520407.09870-0.584703.020502.36450HepG2MATR3
LSM1ENSG00000175324.5402.80990310.903000.373502.072501.36750HepG2MSI2
LSM1ENSG00000175324.5297.92390416.68530-0.484002.368201.77990HepG2NCBP2
LSM1ENSG00000175324.5545.88810398.137300.455204.344803.63770HepG2PUM1
LSM1ENSG00000175324.5554.37170283.610700.966805.612304.62940HepG2RAVER1
LSM1ENSG00000175324.5551.27650406.428900.439703.263302.34020HepG2RBM15
LSM1ENSG00000175324.5644.87760436.985000.561305.305104.64560HepG2RBM22
LSM1ENSG00000175324.5307.95350204.480600.590603.190502.53680HepG2RPS19
LSM1ENSG00000175324.5381.80240262.807300.538702.902102.08450HepG2RPS2
LSM1ENSG00000175324.5571.15040328.844100.796405.723604.73220HepG2SF3A3
LSM1ENSG00000175324.5419.86690324.059300.373602.510801.89370HepG2SMN1
LSM1ENSG00000175324.5325.51600493.55910-0.600505.708705.06140HepG2SRFBP1
LSM1ENSG00000175324.5500.45650391.168000.355402.135001.70410HepG2SRSF1
LSM1ENSG00000175324.5519.76200421.150700.303401.946101.40770HepG2SUCLG1
LSM1ENSG00000175324.5481.84200301.361600.677004.835203.97910HepG2SUPV3L1
LSM1ENSG00000175324.5281.09520202.021200.476502.413001.47420HepG2TFIP11
LSM1ENSG00000175324.5507.02980328.561500.625802.188001.62240HepG2U2AF1
LSM1ENSG00000175324.5282.65660178.056100.666604.218803.28050HepG2UCHL5
LSM1ENSG00000175324.5428.08140291.633500.553604.774503.89880HepG2UPF1
LSM1ENSG00000175324.5471.47500281.562100.743607.486206.57970HepG2UTP3
LSM1ENSG00000175324.51392.963801079.148500.368203.060902.45010K562AQR
LSM1ENSG00000175324.51171.33690899.970700.380104.619703.80600K562DDX47
LSM1ENSG00000175324.5628.17220458.983700.452603.758302.84070K562EIF3G
LSM1ENSG00000175324.5283.10490395.20160-0.481302.973901.62270K562EWSR1
LSM1ENSG00000175324.5748.82060470.843000.669308.458307.47230K562FXR1
LSM1ENSG00000175324.5345.10930540.74730-0.647904.139202.71050K562HNRNPF
LSM1ENSG00000175324.51131.50030592.247100.9339011.168508.98510K562HNRNPM
LSM1ENSG00000175324.5480.09710714.89590-0.574406.629805.42710K562MTPAP
LSM1ENSG00000175324.5552.38870794.28530-0.524007.090405.97590K562NSUN2
LSM1ENSG00000175324.5555.30280404.353900.457602.863002.10170K562PRPF8
LSM1ENSG00000175324.5387.92210543.02880-0.485302.627801.75000K562PSIP1
LSM1ENSG00000175324.5696.04410558.075100.318602.170901.57120K562PTBP1
LSM1ENSG00000175324.5662.54430411.948900.685505.407704.26210K562RPS19
LSM1ENSG00000175324.5545.60710803.02260-0.557607.468606.00760K562SRPK2
LSM1ENSG00000175324.5343.22340522.32510-0.605802.964801.99340K562TIAL1
LSM1ENSG00000175324.5394.63220554.69800-0.491202.472901.58740K562TRIM56
LSM1ENSG00000175324.5695.43420842.19980-0.276202.207801.56180K562UPF1
LSM1ENSG00000175324.5576.37340720.64010-0.322302.128701.36230K562WDR3
LSM1ENSG00000175324.5909.859301215.73770-0.418103.803802.76160K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LSM1 is not available on ENCORE database.





11 RBPs can affect the splicing of LSM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELSM1ENSG00000175324.5chr8-380273193802743538021127380213583802948238029551-0.334000.000000.00000excludedK562SRSF1
SELSM1ENSG00000175324.5chr8-380273193802743538021127380213583802948238029551-0.112000.000000.00018excludedK562SF3B4
SELSM1ENSG00000175324.5chr8-380273193802743538021127380213583802948238029551-0.119000.000060.00403excludedK562PRPF8
SELSM1ENSG00000175324.5chr8-380273193802743538021127380213583802948238029551-0.109000.000000.00003excludedK562AQR
SELSM1ENSG00000175324.5chr8-3802731938027435380211273802135838029482380295510.076000.000070.02121includedK562HNRNPA1
SELSM1ENSG00000175324.5chr8-380273193802743538021127380213583802948238029551-0.053000.000100.00241excludedK562PUS1
SELSM1ENSG00000175324.5chr8-380273193802743538021127380213583802948238029551-0.299000.000000.00000excludedHepG2SRSF1
SELSM1ENSG00000175324.5chr8-380273193802743538021127380213583802948238029551-0.084000.000130.01456excludedHepG2TIAL1
SELSM1ENSG00000175324.5chr8-380273193802743538021127380213583802948238029551-0.139000.000020.00742excludedK562RBM22
SELSM1ENSG00000175324.5chr8-380273193802743538021127380213583802948238029551-0.067000.003580.09733excludedK562TARDBP
SELSM1ENSG00000175324.5chr8-380273193802743538020945380213583802948238029551-0.124000.000000.00016excludedHepG2HNRNPU
SELSM1ENSG00000175324.5chr8-380273193802743538021127380213583802948238029551-0.099000.000020.00188excludedK562PTBP1
A3SSLSM1ENSG00000175324.5chr8-3802731938027497380273193802743538029482380295850.055000.000000.00000longerK562AQR
A3SSLSM1ENSG00000175324.5chr8-3802948238029685380294823802955138033792380340060.114000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LSM1 is not avaliable on ENCORE database.