LRRC47

General Information

Gene Name       : LRRC47
Gene ID             : ENSG00000130764.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LRRC47)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LRRC47ENSG00000130764.912.8817.7315.30ENCSR000AEF
HepG2LRRC47ENSG00000130764.923.2929.9426.62ENCSR985KAT
K562LRRC47ENSG00000130764.926.4632.7829.62ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LRRC47 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LRRC47 RNA is bound by 19 proteins.  







eCLIP assay for LRRC47 is not avaliable on ENCORE database.





19 proteins are bound to LRRC47 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr136969523697082-3'-UTR,intron-Distal5.091329.16846HepG2AKAP1
chr136971283697213-3'-UTR,intron-Distal4.4341813.25367K562UPF1
chr136969523697063-3'-UTR,intron-Distal4.6801712.57965HepG2UPF1
chr136970263697062-3'-UTR,intron-Distal4.108796.24385K562PUM2
chr136968133696915-3'-UTR,intron-Distal5.267497.54335HepG2SUB1
chr136968513696952-3'-UTR,intron-Distal4.933327.76785HepG2AKAP1
chr136971633697223-3'-UTR,intron-Distal5.343839.81639K562PUM2
chr136980853698123-3'-UTR,CDS,intron-Distal4.478934.97342HepG2PPIG
chr136972243697348-3'-UTR,intron-Distal5.239969.25213HepG2UPF1
chr136971343697211-3'-UTR,intron-Distal4.807806.38589HepG2AKAP1
chr136968593696932-3'-UTR,intron-Distal5.050437.69327HepG2UPF1
chr136968703696919-3'-UTR,intron-Distal3.671147.29435K562UPF1
chr136969383697004-3'-UTR,intron-Distal4.4478310.54280K562PUM2
chr136969163697103-3'-UTR,intron-Distal4.252564.50986K562IGF2BP1
chr136969813697072-3'-UTR,intron-Distal3.8258416.21091K562UPF1
chr136974723697525-3'-UTR,intron-Distal3.926083.07786HepG2UPF1
chr136971383697185-3'-UTR,intron-Distal3.795124.23488K562FAM120A
chr137129183713053-5'-UTR,CDS,intron-Distal3.097815.01245HepG2DDX3X
chr137129603713061-5'-UTR,CDS,intron-Distal4.093744.84938K562DDX3X
chr136992343699290-5'-UTR,CDS,intron-Distal5.238327.65840HepG2PPIG
chr137035393703710-CDS,intron-Distal4.5178911.02823HepG2PRPF4
chr137004543700553-CDS,intron-Distal,intron-Proximal3.859974.58287K562PRPF8
chr137123863712450-CDS,intron-Distal3.372964.22621HepG2PRPF8
chr137005783700641-CDS,intron-Distal,intron-Proximal4.351914.25741HepG2G3BP1
chr137005123700577-CDS,intron-Distal,intron-Proximal3.261773.40738HepG2PRPF8
chr137005653700640-CDS,intron-Distal,intron-Proximal4.344554.72838K562UCHL5
chr137036403703695-CDS,intron-Distal3.267143.17151K562UCHL5
chr137017663701834-CDS,intron-Distal,intron-Proximal4.481255.54524HepG2SF3B4
chr137034483703511-CDS,intron-Distal3.452944.47362HepG2G3BP1
chr137035453703624-CDS,intron-Distal4.086893.58513HepG2GTF2F1
chr137036543703728-CDS,intron-Distal3.9956113.24825HepG2PPIG
chr137035373703621-CDS,intron-Distal3.357469.24355HepG2PPIG
chr137036393703710-CDS,intron-Distal4.038516.82143HepG2G3BP1
chr137035363703631-CDS,intron-Distal3.111266.02234K562UCHL5
chr137033763703437-CDS,intron-Distal,intron-Proximal3.148515.31044HepG2PRPF8
chr137016503701726-CDS,intron-Distal,intron-Proximal3.033663.50044K562YBX3
chr137035113703639-CDS,intron-Distal4.3185014.12387HepG2G3BP1
chr137004673700559-CDS,intron-Distal,intron-Proximal5.495405.58036HepG2EFTUD2
chr137005863700669-CDS,intron-Distal,intron-Proximal3.405334.88141HepG2GRWD1
chr137016123701680-CDS,intron-Distal,intron-Proximal3.691798.23064HepG2PRPF8
chr137027723702836-intron-Distal3.094373.20171HepG2ILF3
chr137008313700887-intron-Distal,intron-Proximal4.577273.78162K562HNRNPM
chr137006763700739-intron-Distal,intron-Proximal3.675524.29246HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LRRC47 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LRRC47 is not available on ENCORE database.

  • 62 RBPs can affect the levels of LRRC47.  








The Knockdown/knockout RNA-Seq assay for LRRC47 is not available on ENCORE database.





62 RBPs can affect the gene expression of LRRC47 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LRRC47ENSG00000130764.5691.76050896.58410-0.374204.233003.51100HepG2ACO1
LRRC47ENSG00000130764.5642.141801086.40030-0.758608.092406.78930HepG2ASCC1
LRRC47ENSG00000130764.5974.48000626.535900.637106.565705.69060HepG2BOP1
LRRC47ENSG00000130764.5414.13330575.17320-0.473902.991102.27960HepG2CPSF6
LRRC47ENSG00000130764.5962.02500757.387700.344903.335602.64270HepG2CELF1
LRRC47ENSG00000130764.5986.88710829.199000.251102.490701.69630HepG2DDX19B
LRRC47ENSG00000130764.5559.53290425.297800.395603.643502.91430HepG2DNAJC2
LRRC47ENSG00000130764.5295.31550405.62390-0.457902.273501.44680HepG2EIF3D
LRRC47ENSG00000130764.51795.246601464.131800.294003.239602.59760HepG2ETF1
LRRC47ENSG00000130764.5583.70150946.11430-0.696805.345604.30460HepG2FIP1L1
LRRC47ENSG00000130764.5829.121601074.30390-0.373702.335001.72110HepG2G3BP1
LRRC47ENSG00000130764.5857.09310660.612600.375503.800202.97210HepG2HNRNPF
LRRC47ENSG00000130764.5893.38660650.515500.457604.552503.64330HepG2IGF2BP1
LRRC47ENSG00000130764.5551.54140807.55090-0.550105.631004.55050HepG2NOL12
LRRC47ENSG00000130764.5770.074301061.78510-0.463403.398802.60370HepG2PABPC4
LRRC47ENSG00000130764.5546.51750426.911200.356202.433401.73800HepG2PPIL4
LRRC47ENSG00000130764.5785.062901047.68530-0.416304.871604.18940HepG2PTBP1
LRRC47ENSG00000130764.51182.36620770.873300.617007.303206.39400HepG2PUF60
LRRC47ENSG00000130764.5996.28710818.310600.283802.916602.31130HepG2PUM1
LRRC47ENSG00000130764.5712.02650913.22500-0.359003.975703.26230HepG2PUS1
LRRC47ENSG00000130764.5909.055401134.59370-0.319702.708702.09020HepG2QKI
LRRC47ENSG00000130764.5800.09280612.892200.384402.271401.38050HepG2RBM27
LRRC47ENSG00000130764.5945.106101165.94380-0.303002.861602.31320HepG2NELFE
LRRC47ENSG00000130764.5986.79370711.630800.471503.762802.98590HepG2RPLP0
LRRC47ENSG00000130764.5634.41710394.753900.684406.424205.52960HepG2RPS19
LRRC47ENSG00000130764.5841.56660565.241600.574104.694203.66760HepG2RPS2
LRRC47ENSG00000130764.5702.90060507.342300.470302.478801.72020HepG2RPS3A
LRRC47ENSG00000130764.51597.05310984.537600.697806.025905.00740HepG2SF3A3
LRRC47ENSG00000130764.5820.33810615.792000.413702.828202.11410HepG2SF3B1
LRRC47ENSG00000130764.5872.03120739.136100.238401.997901.38390HepG2SLBP
LRRC47ENSG00000130764.5802.349101138.49330-0.504807.051006.37920HepG2SRSF1
LRRC47ENSG00000130764.5633.93380926.24720-0.547107.887707.04040HepG2SRSF9
LRRC47ENSG00000130764.51423.392601199.935900.246302.444001.95620HepG2SSB
LRRC47ENSG00000130764.5601.40360441.425800.446102.363301.35860HepG2STIP1
LRRC47ENSG00000130764.5580.702401023.39390-0.8175013.6079012.50220HepG2TAF15
LRRC47ENSG00000130764.5670.79120940.28350-0.487204.964103.85360HepG2TIA1
LRRC47ENSG00000130764.5644.95320465.059000.471703.897903.32580HepG2TIAL1
LRRC47ENSG00000130764.51133.50990809.318200.485904.026303.27440HepG2U2AF1
LRRC47ENSG00000130764.51200.33540797.140400.590402.356101.58810HepG2UBE2L3
LRRC47ENSG00000130764.5589.10990369.719800.672003.806402.91680HepG2UCHL5
LRRC47ENSG00000130764.51031.88430842.976600.291602.904002.29410HepG2UTP3
LRRC47ENSG00000130764.5789.58100646.152000.289102.596501.94270HepG2ZC3H8
LRRC47ENSG00000130764.51161.34350928.440300.322802.906301.55520K562BCCIP
LRRC47ENSG00000130764.52041.461102632.18570-0.366704.995903.67790K562CELF1
LRRC47ENSG00000130764.51025.03140749.888800.450803.501202.46770K562EFTUD2
LRRC47ENSG00000130764.51640.09410963.768100.7669017.2344015.83740K562FXR1
LRRC47ENSG00000130764.5347.58510473.41860-0.445802.085801.48330K562G3BP2
LRRC47ENSG00000130764.5829.830901299.13420-0.6467010.530408.43880K562GLRX3
LRRC47ENSG00000130764.5888.978701307.10890-0.556203.187201.47890K562HNRNPAB
LRRC47ENSG00000130764.5609.37500806.31070-0.404003.018602.39850K562HNRNPC
LRRC47ENSG00000130764.51213.47400834.626600.539804.683703.58310K562MAGOH
LRRC47ENSG00000130764.51108.53390832.892100.412403.917902.80530K562MATR3
LRRC47ENSG00000130764.5968.023701365.88280-0.496707.887606.58620K562MTPAP
LRRC47ENSG00000130764.51677.541702341.40930-0.481004.130102.28860K562NOL12
LRRC47ENSG00000130764.51195.946401517.54770-0.343605.604504.59810K562NSUN2
LRRC47ENSG00000130764.5980.11110742.561400.400303.209402.15520K562PCBP2
LRRC47ENSG00000130764.51256.10130729.728500.783409.617608.21200K562PRPF8
LRRC47ENSG00000130764.51114.08840810.912400.458104.787403.93620K562PTBP1
LRRC47ENSG00000130764.53166.365002335.321800.439103.259102.37510K562PUF60
LRRC47ENSG00000130764.52009.889702484.32330-0.305703.686002.44180K562PUM1
LRRC47ENSG00000130764.5890.444601247.18340-0.486104.077903.43740K562PUS1
LRRC47ENSG00000130764.5964.83700777.419500.311502.085801.36150K562RBM22
LRRC47ENSG00000130764.51334.12340743.298300.843809.382207.86370K562RPS19
LRRC47ENSG00000130764.5765.45360458.056100.740706.377304.77450K562RPS3
LRRC47ENSG00000130764.5655.44040492.082000.413503.320202.38160K562SF3B4
LRRC47ENSG00000130764.5564.74690782.46150-0.470403.594702.13640K562SLBP
LRRC47ENSG00000130764.51327.811101534.26900-0.208502.185701.34500K562SRPK2
LRRC47ENSG00000130764.51172.88570794.995000.560906.642105.55580K562SRSF1
LRRC47ENSG00000130764.51219.195901011.945300.268702.085401.37190K562SYNCRIP
LRRC47ENSG00000130764.51146.10120804.521000.510404.641303.71830K562TARDBP
LRRC47ENSG00000130764.51040.64720776.068700.423103.936202.93660K562TIA1
LRRC47ENSG00000130764.51059.739401376.84150-0.377703.547802.55790K562WDR3
LRRC47ENSG00000130764.51706.254802224.06560-0.382403.847402.80030K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LRRC47 is not available on ENCORE database.





2 RBPs can affect the splicing of LRRC47 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELRRC47ENSG00000130764.5chr1-370033337004753699224369932737005593700611-0.076000.000180.04835excludedHepG2DKC1
SELRRC47ENSG00000130764.5chr1-3700333370047536992243699327370055937006000.135000.000000.00000includedK562AQR
A3SSLRRC47ENSG00000130764.5chr1-3697698369792636976983697900369807536981650.292000.000000.00000longerK562AQR
A3SSLRRC47ENSG00000130764.5chr1-3699224369937936992243699327370055937007390.112000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LRRC47 is not avaliable on ENCORE database.