LINC00888

General Information

Gene Name       : LINC00888
Gene ID             : ENSG00000240024.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LINC00888)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LINC00888ENSG00000240024.56.505.876.19ENCSR000AEF
HepG2LINC00888ENSG00000240024.510.8312.9711.90ENCSR985KAT
K562LINC00888ENSG00000240024.514.6512.8113.73ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LINC00888 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LINC00888 RNA is bound by 4 proteins.  







eCLIP assay for LINC00888 is not avaliable on ENCORE database.





4 proteins are bound to LINC00888 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3183169711183169720+intron-Distal6.07663400.00000HepG2DKC1
chr3183169685183169704+intron-Distal,intron-Proximal6.73642400.00000HepG2DKC1
chr3183171629183171640+intron-Distal5.59370400.00000HepG2DKC1
chr3183171660183171667+intron-Distal5.41668400.00000HepG2DKC1
chr3183171694183171698+intron-Distal5.00481400.00000HepG2DKC1
chr3183171683183171685+intron-Distal4.71649400.00000HepG2DKC1
chr3183171698183171729+intron-Distal,intron-Proximal5.28937400.00000HepG2DKC1
chr3183171600183171660+intron-Distal3.0579156.41517HepG2NOLC1
chr3183171668183171675+intron-Distal5.35123400.00000HepG2DKC1
chr3183171644183171660+intron-Distal5.44416400.00000HepG2DKC1
chr3183171640183171644+intron-Distal5.60724400.00000HepG2DKC1
chr3183169654183169680+intron-Distal,intron-Proximal7.05996400.00000HepG2DKC1
chr3183171689183171693+intron-Distal5.27016400.00000HepG2DKC1
chr3183169739183169781+intron-Distal,intron-Proximal4.167417.26566K562SMNDC1
chr3183169680183169685+intron-Distal,intron-Proximal7.07804400.00000HepG2DKC1
chr3183169704183169711+intron-Distal,intron-Proximal6.45943400.00000HepG2DKC1
chr3183171675183171680+intron-Distal5.31936400.00000HepG2DKC1
chr3183169645183169654+intron-Distal,intron-Proximal7.19015400.00000HepG2DKC1
chr3183171797183171829+intron-Proximal3.690134.14074K562UPF1
chr3183171729183171736+intron-Proximal6.04807400.00000HepG2DKC1
chr3183170286183170299+intron-Proximal3.257173.07801K562UPF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LINC00888 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LINC00888 is not available on ENCORE database.

  • 60 RBPs can affect the levels of LINC00888.  








The Knockdown/knockout RNA-Seq assay for LINC00888 is not available on ENCORE database.





60 RBPs can affect the gene expression of LINC00888 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LINC00888ENSG00000240024.1289.35020197.270500.552502.254301.39940HepG2ABCF1
LINC00888ENSG00000240024.1117.61310181.79840-0.628303.017402.38690HepG2ACO1
LINC00888ENSG00000240024.1263.79230379.34880-0.524102.327701.83520HepG2AKAP1
LINC00888ENSG00000240024.1121.66970216.73100-0.832903.948602.70760HepG2AKAP8
LINC00888ENSG00000240024.1345.78580257.586400.424702.463301.80860HepG2AUH
LINC00888ENSG00000240024.1221.55000136.347800.700202.656901.77480HepG2BCLAF1
LINC00888ENSG00000240024.1203.11320133.557300.604702.448201.80610HepG2DDX21
LINC00888ENSG00000240024.1204.88690130.538500.650302.790301.87230HepG2DDX24
LINC00888ENSG00000240024.1279.05900168.720400.725804.087902.86780HepG2DDX5
LINC00888ENSG00000240024.1397.25680173.936901.1914014.0587012.77480HepG2DKC1
LINC00888ENSG00000240024.1215.99560126.018200.777302.594001.54860HepG2EIF3G
LINC00888ENSG00000240024.1522.96400331.634800.657004.248803.46080HepG2EIF4A3
LINC00888ENSG00000240024.1171.91170322.88670-0.909404.741103.85590HepG2EIF4B
LINC00888ENSG00000240024.1319.90550238.018700.426502.157201.40300HepG2EIF4G1
LINC00888ENSG00000240024.1282.21790170.912400.723504.047602.74720HepG2ESF1
LINC00888ENSG00000240024.1214.88970310.39170-0.530502.461901.83240HepG2G3BP1
LINC00888ENSG00000240024.1236.48920164.419000.524302.493801.80510HepG2IGF2BP1
LINC00888ENSG00000240024.1392.47710233.203900.750904.155603.13290HepG2LARP4
LINC00888ENSG00000240024.1194.89220336.58730-0.788304.393103.61450HepG2MATR3
LINC00888ENSG00000240024.1120.16210344.51720-1.5196013.6140012.27610HepG2NCBP2
LINC00888ENSG00000240024.1243.96670134.059600.863704.454803.51020HepG2NSUN2
LINC00888ENSG00000240024.1221.26800306.82110-0.471602.028801.40180HepG2PABPC4
LINC00888ENSG00000240024.1298.64340161.969500.882604.776703.43760HepG2PCBP2
LINC00888ENSG00000240024.1196.66630132.529700.569302.700801.93480HepG2PRPF4
LINC00888ENSG00000240024.1403.29800170.276301.243909.142307.06510HepG2PRPF6
LINC00888ENSG00000240024.1232.06580293.91730-0.340901.767101.31040HepG2PTBP1
LINC00888ENSG00000240024.1487.68440228.388501.0944011.9028010.78610HepG2PUF60
LINC00888ENSG00000240024.195.14410165.07640-0.794902.581501.55820HepG2RCC2
LINC00888ENSG00000240024.1265.61440179.869000.562302.582601.91910HepG2RPLP0
LINC00888ENSG00000240024.1246.54190164.043700.587702.756802.06150HepG2SRSF7
LINC00888ENSG00000240024.1598.87170242.397501.3048024.4843023.29530HepG2SSB
LINC00888ENSG00000240024.1256.23820153.590900.738303.011202.30930HepG2SUPV3L1
LINC00888ENSG00000240024.1195.01860287.08260-0.557903.227602.62860HepG2TAF15
LINC00888ENSG00000240024.1288.64620160.923700.842806.026405.34090HepG2TIAL1
LINC00888ENSG00000240024.1456.44760170.427401.4212014.9595013.45450HepG2U2AF1
LINC00888ENSG00000240024.1234.68180140.626200.738702.726301.72850HepG2UPF2
LINC00888ENSG00000240024.1272.33080151.193500.848904.134803.25590HepG2XRN2
LINC00888ENSG00000240024.1213.56310130.791500.707304.007903.22370HepG2ZC3H8
LINC00888ENSG00000240024.1464.42180567.61210-0.289501.896001.40910K562AGGF1
LINC00888ENSG00000240024.1319.60070222.028400.525403.043601.65560K562BCCIP
LINC00888ENSG00000240024.1269.13830171.530900.649803.523002.63720K562CPSF6
LINC00888ENSG00000240024.1631.27800502.118500.330102.205901.33570K562CELF1
LINC00888ENSG00000240024.1178.45470260.07370-0.543403.133601.88590K562EIF4B
LINC00888ENSG00000240024.1301.47080174.515700.788602.936202.05460K562FMR1
LINC00888ENSG00000240024.1156.33110300.33900-0.942007.735606.79190K562FXR1
LINC00888ENSG00000240024.1415.20750289.817300.518602.533801.86210K562G3BP2
LINC00888ENSG00000240024.1651.23090331.133600.9757011.277209.72410K562GRSF1
LINC00888ENSG00000240024.1278.63750171.414300.700803.856003.16600K562HNRNPC
LINC00888ENSG00000240024.1570.55250275.086801.0524011.243809.66550K562HSPD1
LINC00888ENSG00000240024.1232.70630356.17980-0.614104.202603.16330K562MAGOH
LINC00888ENSG00000240024.1258.80400355.47800-0.457902.586601.69710K562MATR3
LINC00888ENSG00000240024.1234.60820159.860500.553302.472101.64860K562METAP2
LINC00888ENSG00000240024.1704.20150435.338600.693806.920605.16520K562MSI2
LINC00888ENSG00000240024.1359.35270234.878700.613404.531903.51860K562MTPAP
LINC00888ENSG00000240024.1306.37530196.673900.639403.242302.34100K562PCBP3
LINC00888ENSG00000240024.1232.91860153.693300.599702.631501.75310K562PSIP1
LINC00888ENSG00000240024.1246.33150346.04080-0.490302.983102.29590K562PTBP1
LINC00888ENSG00000240024.1718.84650445.618600.689803.910402.94530K562PUF60
LINC00888ENSG00000240024.1222.08200331.88630-0.579603.476902.52920K562RBM22
LINC00888ENSG00000240024.1240.88460149.518600.687903.025002.17060K562RPS19
LINC00888ENSG00000240024.1376.86860246.399900.613003.224601.82070K562SSB
LINC00888ENSG00000240024.1551.58730388.810500.504404.249502.41220K562SUCLG1
LINC00888ENSG00000240024.1250.72500343.34580-0.453602.299201.65100K562TARDBP
LINC00888ENSG00000240024.1414.24170281.113800.559203.159601.97940K562U2AF1
LINC00888ENSG00000240024.1257.10780150.417800.773304.034102.78140K562UCHL5
LINC00888ENSG00000240024.1403.37980276.713600.543604.307003.42950K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LINC00888 is not available on ENCORE database.





1 RBPs can affect the splicing of LINC00888 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELINC00888ENSG00000240024.1chr3+1831698651831703001831653951831655821831717991831718810.052000.002970.05010includedHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LINC00888 is not avaliable on ENCORE database.