LINC00470

General Information

Gene Name : LINC00470
Gene ID : ENSG00000132204.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LINC00470)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LINC00470	ENSG00000132204.13	0.00	0.00	0.00	ENCSR000AEF
HepG2	LINC00470	ENSG00000132204.13	0.00	0.00	0.00	ENCSR985KAT
K562	LINC00470	ENSG00000132204.13	61.72	93.94	77.83	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LINC00470 is not avaliable on ENCORE database.

Proteins bound to RNA

LINC00470 RNA is bound by 27 proteins.

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eCLIP assay for LINC00470 is not avaliable on ENCORE database.

27 proteins are bound to LINC00470 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr18	1361256	1361349	-	intron-Distal	4.91613	30.78598	K562	KHSRP
chr18	1347093	1347175	-	intron-Distal	5.77841	30.00500	K562	TARDBP
chr18	1294092	1294153	-	intron-Distal	5.36333	29.22419	K562	AGGF1
chr18	1281200	1281236	-	intron-Distal	3.74710	27.37527	K562	EXOSC5
chr18	1280892	1280945	-	intron-Distal	5.81257	25.36223	K562	EXOSC5
chr18	1281247	1281300	-	intron-Distal	4.81878	24.37199	K562	EXOSC5
chr18	1361072	1361102	-	intron-Distal	6.16879	23.05165	K562	KHSRP
chr18	1282548	1282618	-	intron-Distal	5.59553	22.37985	K562	EXOSC5
chr18	1281834	1281866	-	intron-Distal	4.96106	21.87682	K562	EXOSC5
chr18	1281866	1281881	-	intron-Distal	5.47945	21.71575	K562	EXOSC5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 230 entries

eCLIP assay for LINC00470 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LINC00470 is not available on ENCORE database.
37 RBPs can affect the levels of LINC00470.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LINC00470 is not available on ENCORE database.

37 RBPs can affect the gene expression of LINC00470 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LINC00470	ENSG00000132204.9	191.09670	446.25990	-1.22360	10.45110	8.91350	K562	CPSF6
LINC00470	ENSG00000132204.9	84.67400	230.08490	-1.44220	9.20540	7.70060	K562	RPS19
LINC00470	ENSG00000132204.9	357.24790	611.00720	-0.77430	8.50510	7.44370	K562	DDX47
LINC00470	ENSG00000132204.9	261.73090	471.52460	-0.84920	7.63030	6.15460	K562	FIP1L1
LINC00470	ENSG00000132204.9	24.05490	1.05980	4.50430	6.26540	5.55130	HepG2	SSB
LINC00470	ENSG00000132204.9	304.38050	525.17180	-0.78690	6.28500	5.45990	K562	AQR
LINC00470	ENSG00000132204.9	230.41180	419.67450	-0.86510	6.45930	5.11380	K562	BOP1
LINC00470	ENSG00000132204.9	177.83480	321.93580	-0.85620	5.31190	3.97770	K562	MATR3
LINC00470	ENSG00000132204.9	286.19160	422.85690	-0.56320	4.29750	3.61710	K562	AGGF1
LINC00470	ENSG00000132204.9	212.01950	353.80060	-0.73870	4.52120	3.45970	K562	PCBP3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 38 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LINC00470 is not available on ENCORE database.

10 RBPs can affect the splicing of LINC00470 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	LINC00470	ENSG00000132204.9	chr18	-	1273361	1273534			1272442	1272512	1275966	1276078	-0.32200	0.00002	0.00069	excluded	K562	U2AF2
A3SS	LINC00470	ENSG00000132204.9	chr18	-	1269687	1269936			1269687	1269853	1272442	1272512	0.07000	0.00002	0.00023	longer	K562	AQR
SE	LINC00470	ENSG00000132204.9	chr18	-	1358726	1358895			1275966	1276078	1368485	1368598	-0.26400	0.00003	0.00096	excluded	K562	PUS1
SE	LINC00470	ENSG00000132204.9	chr18	-	1358726	1358761			1275966	1276078	1368485	1368598	-0.25700	0.00004	0.01151	excluded	K562	ZC3H8
A3SS	LINC00470	ENSG00000132204.9	chr18	-	1275966	1276088			1275966	1276078	1358726	1358895	0.25900	0.00007	0.07141	longer	K562	SAFB
SE	LINC00470	ENSG00000132204.9	chr18	-	1273361	1273534			1272442	1272512	1275966	1276088	0.18100	0.00020	0.01907	included	K562	HNRNPL
SE	LINC00470	ENSG00000132204.9	chr18	-	1273361	1273534			1272442	1272512	1275966	1276078	-0.29300	0.00036	0.00971	excluded	K562	U2AF1
SE	LINC00470	ENSG00000132204.9	chr18	-	1278568	1278634			1275966	1276078	1368485	1368598	0.53000	0.00038	0.06727	included	K562	FXR2
SE	LINC00470	ENSG00000132204.9	chr18	-	1273361	1273534			1272442	1272512	1275966	1276088	-0.16800	0.00188	0.02861	excluded	K562	PUS1
MXE	LINC00470	ENSG00000132204.9	chr18	-	1275966	1276078	1358726	1358895	1272442	1272512	1368485	1368598	0.14200	0.00216	0.06425	1included	K562	AGGF1

Showing 1 to 10 of 11 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LINC00470

General Information

Functions

Localization

Domains (AlphaFold: LINC00470)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LINC00470 is not avaliable on ENCORE database.

27 proteins are bound to LINC00470 RNA:

eCLIP assay for LINC00470 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LINC00470 is not available on ENCORE database.

37 RBPs can affect the gene expression of LINC00470 :

The Knockdown/knockout RNA-Seq assay for LINC00470 is not available on ENCORE database.

10 RBPs can affect the splicing of LINC00470 :

The Knockdown/knockout RNA-Seq assay for LINC00470 is not avaliable on ENCORE database.