FAM78A

General Information

Gene Name       : FAM78A
Gene ID             : ENSG00000126882.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: FAM78A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FAM78AENSG00000126882.123.389.116.24ENCSR000AEF
HepG2FAM78AENSG00000126882.120.390.140.27ENCSR985KAT
K562FAM78AENSG00000126882.1249.6443.7446.69ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM78A is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM78A RNA is bound by 16 proteins.  







eCLIP assay for FAM78A is not avaliable on ENCORE database.





16 proteins are bound to FAM78A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9134135149134135211-3'-UTR,intron-Distal3.306434.48208K562AKAP1
chr9134134854134134918-3'-UTR,intron-Distal4.2844014.60208K562UPF1
chr9134134436134134488-3'-UTR,intron-Distal4.6159113.57997K562UPF1
chr9134133621134133687-3'-UTR,intron-Distal3.467647.99231K562IGF2BP2
chr9134135300134135381-3'-UTR,intron-Distal4.7398919.38593K562UPF1
chr9134133991134134025-3'-UTR,intron-Distal4.049189.37242K562UPF1
chr9134133631134133679-3'-UTR,intron-Distal3.955826.55932K562IGF2BP1
chr9134135315134135408-3'-UTR,intron-Distal3.661504.68791K562PCBP1
chr9134134639134134688-3'-UTR,intron-Distal4.3276012.41920K562UPF1
chr9134134761134134841-3'-UTR,intron-Distal4.5228121.81494K562UPF1
chr9134136011134136117-3'-UTR,intron-Distal,intron-Proximal4.0038713.64144K562IGF2BP2
chr9134133545134133631-3'-UTR,intron-Distal4.8009114.10912K562IGF2BP1
chr9134133473134133520-3'-UTR,intron-Distal3.761723.08967K562KHDRBS1
chr9134135023134135079-3'-UTR,intron-Distal4.3510915.61943K562UPF1
chr9134135132134135284-3'-UTR,intron-Distal3.5117031.09208K562UPF1
chr9134135093134135118-3'-UTR,intron-Distal3.717533.25175K562YBX3
chr9134135575134135627-3'-UTR,intron-Distal3.5434610.15975K562UPF1
chr9134134954134135032-3'-UTR,intron-Distal6.6890032.01567K562LIN28B
chr9134135670134135749-3'-UTR,intron-Distal3.8828614.25286K562UPF1
chr9134134030134134091-3'-UTR,intron-Distal3.5453711.17695K562UPF1
chr9134134953134135023-3'-UTR,intron-Distal4.2280514.94065K562UPF1
chr9134133567134133621-3'-UTR,intron-Distal4.5789314.74404K562UPF1
chr9134136039134136105-3'-UTR,intron-Distal,intron-Proximal3.599587.09919K562RBM15
chr9134136046134136131-3'-UTR,intron-Distal,intron-Proximal3.7078610.14802K562IGF2BP1
chr9134133848134133875-3'-UTR,intron-Distal4.256423.76295K562IGF2BP2
chr9134151884134151924-5'-UTR,intron-Distal3.598513.04123K562LIN28B
chr9134151853134151914-5'-UTR,intron-Distal4.078624.17294K562DDX6
chr9134151816134151884-5'-UTR,intron-Distal3.159727.98234K562DDX3X
chr9134151253134151311-CDS,intron-Distal3.313833.50904K562LIN28B
chr9134136532134136580-CDS,intron-Distal3.418714.80598K562METAP2
chr9134136526134136576-CDS,intron-Distal3.6456211.39786K562RBM15
chr9134136242134136277-CDS,intron-Distal3.557884.80676K562RBM15
chr9134136414134136437-CDS,intron-Distal3.8245913.46871K562YBX3
chr9134136470134136510-CDS,intron-Distal4.861776.46342K562METAP2
chr9134141703134141750-intron-Distal4.048103.10925K562DGCR8
chr9134140394134140502-intron-Distal3.740183.37923K562KHDRBS1
chr9134151144134151206-intron-Distal3.167484.08412K562RBM15
chr9134141489134141607-intron-Distal3.768823.55447K562FUS
chr9134151160134151220-intron-Distal5.077074.65563K562AQR
chr9134141435134141595-intron-Distal3.445039.70333K562DROSHA
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM78A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM78A is not available on ENCORE database.

  • 62 RBPs can affect the levels of FAM78A.  








The Knockdown/knockout RNA-Seq assay for FAM78A is not available on ENCORE database.





62 RBPs can affect the gene expression of FAM78A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM78AENSG00000126882.855.6376017.459001.672003.285902.71300HepG2AKAP1
FAM78AENSG00000126882.875.7585016.722502.179506.784405.84740HepG2DDX3X
FAM78AENSG00000126882.832.188507.220202.156303.788503.08980HepG2HNRNPU
FAM78AENSG00000126882.842.609608.634402.302905.237903.83840HepG2UTP18
FAM78AENSG00000126882.82347.005603805.97390-0.6974010.926608.60220K562ABCF1
FAM78AENSG00000126882.82327.705103119.31330-0.422308.655407.72590K562AGGF1
FAM78AENSG00000126882.81651.737802117.22860-0.358205.137003.03710K562AKAP1
FAM78AENSG00000126882.82908.654103938.69040-0.437404.902704.16110K562AQR
FAM78AENSG00000126882.84005.978403405.590200.234102.682501.78430K562ATP5C1
FAM78AENSG00000126882.82074.049802375.61650-0.195902.385601.49550K562BCLAF1
FAM78AENSG00000126882.81334.407601791.93010-0.425303.709502.69820K562BOP1
FAM78AENSG00000126882.81377.426001920.76160-0.479704.225702.62980K562CIRBP
FAM78AENSG00000126882.84594.436506856.57710-0.5776012.4420010.45980K562CELF1
FAM78AENSG00000126882.83240.983904638.48430-0.5172013.9386012.58670K562DDX47
FAM78AENSG00000126882.84448.487303492.737200.348905.786704.46180K562DKC1
FAM78AENSG00000126882.82568.824903544.65410-0.464509.322108.12050K562EIF2S2
FAM78AENSG00000126882.81538.186802268.16320-0.560303.394502.27090K562EIF3A
FAM78AENSG00000126882.82555.819401853.977700.463103.929801.62730K562EIF3H
FAM78AENSG00000126882.81325.749002206.62530-0.735009.366007.10390K562FKBP4
FAM78AENSG00000126882.81055.339901643.30330-0.638906.890705.37800K562FTO
FAM78AENSG00000126882.8814.550701168.57510-0.520706.477904.30990K562FUS
FAM78AENSG00000126882.8492.257301097.85010-1.1572013.4952011.67790K562G3BP2
FAM78AENSG00000126882.83118.188203860.61810-0.308104.283602.87200K562GLRX3
FAM78AENSG00000126882.83609.305004723.58260-0.388204.946003.93730K562GRSF1
FAM78AENSG00000126882.82678.194203772.09820-0.494104.289702.95400K562HNRNPA1
FAM78AENSG00000126882.81495.915502540.37240-0.7640014.7065013.41480K562HNRNPC
FAM78AENSG00000126882.81664.262802250.57740-0.435403.500902.44170K562HNRNPM
FAM78AENSG00000126882.82318.199001792.975200.370502.430601.48740K562IGF2BP2
FAM78AENSG00000126882.82259.958101823.359000.309602.654501.49660K562IGF2BP3
FAM78AENSG00000126882.81739.311302329.79650-0.421703.593101.87930K562ILF3
FAM78AENSG00000126882.82551.243101883.506300.437705.262704.09440K562MAGOH
FAM78AENSG00000126882.82300.807601879.557500.291602.728301.81290K562MATR3
FAM78AENSG00000126882.81410.100901775.55520-0.332502.982502.07050K562METAP2
FAM78AENSG00000126882.83989.770305944.19280-0.575208.530606.60000K562MSI2
FAM78AENSG00000126882.83133.785804058.90130-0.373208.178006.85780K562MTPAP
FAM78AENSG00000126882.83958.298404510.00150-0.188203.813702.95320K562NSUN2
FAM78AENSG00000126882.82209.521503873.75010-0.8100011.709709.99950K562PCBP3
FAM78AENSG00000126882.81781.048402971.16400-0.7383011.6252010.04120K562POLR2G
FAM78AENSG00000126882.81519.390502144.80230-0.497403.384302.55230K562PRPF8
FAM78AENSG00000126882.82598.547801830.007100.505807.365106.31930K562PTBP1
FAM78AENSG00000126882.84434.683006084.57460-0.456305.393604.25770K562PUF60
FAM78AENSG00000126882.85232.426506341.19230-0.277303.959102.80620K562PUM2
FAM78AENSG00000126882.82230.711703218.97530-0.529106.333205.55000K562PUS1
FAM78AENSG00000126882.8670.415901047.46290-0.643803.488501.86060K562RAVER1
FAM78AENSG00000126882.81550.533902184.18800-0.494303.490202.57000K562RPS19
FAM78AENSG00000126882.82555.079404449.92660-0.8004023.7298021.57330K562SF3A3
FAM78AENSG00000126882.81125.221501730.15880-0.620704.527103.26730K562SF3B1
FAM78AENSG00000126882.83165.870502012.079500.653802.643101.38200K562SFPQ
FAM78AENSG00000126882.8915.138001213.78670-0.407503.815501.86790K562SND1
FAM78AENSG00000126882.83796.745004559.01930-0.264005.534504.26680K562SRPK2
FAM78AENSG00000126882.82407.137601794.111400.423905.176904.21370K562SRSF1
FAM78AENSG00000126882.81996.507301344.200200.570607.025705.23370K562SRSF4
FAM78AENSG00000126882.8655.532601077.66240-0.717203.862102.01810K562TAF15
FAM78AENSG00000126882.82656.587201815.554600.549106.437805.31740K562TARDBP
FAM78AENSG00000126882.8753.457901144.26990-0.602806.741904.22980K562TBRG4
FAM78AENSG00000126882.82315.251701751.360800.402604.764003.64560K562TIA1
FAM78AENSG00000126882.82119.837701719.086900.302202.491001.46710K562TRA2A
FAM78AENSG00000126882.8696.680101064.07830-0.611005.151803.56600K562U2AF1
FAM78AENSG00000126882.8700.796201098.99240-0.649109.053007.59440K562U2AF2
FAM78AENSG00000126882.83873.558104782.03450-0.304005.920104.91450K562UPF1
FAM78AENSG00000126882.82634.541604091.86140-0.6352011.9168010.05000K562WDR3
FAM78AENSG00000126882.83788.695204254.88570-0.167402.350801.56610K562WDR43
FAM78AENSG00000126882.83677.719304437.08870-0.270802.405701.60980K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM78A is not available on ENCORE database.






No RBPs affect the alternative splcing events of FAM78A on ENCORE database.





The Knockdown/knockout RNA-Seq assay for FAM78A is not avaliable on ENCORE database.