EP400NL

General Information

Gene Name       : EP400NL
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: EP400NL)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for EP400NL is not avaliable on ENCORE database.



Proteins bound to RNA
  • EP400NL RNA is bound by 31 proteins.  







eCLIP assay for EP400NL is not avaliable on ENCORE database.





31 proteins are bound to EP400NL RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12132605984132606093+3'-UTR,intron-Proximal3.232214.30739HepG2SRSF1
chr12132606469132606514+3'-UTR,intron-Proximal3.474703.59112HepG2PPIG
chr12132593395132593492+3'-UTR,intron-Distal,polyA_site3.7113910.91503K562KHSRP
chr12132605980132606060+3'-UTR,intron-Proximal3.660689.51790HepG2PPIG
chr12132593365132593395+3'-UTR,intron-Distal3.727245.78005K562KHSRP
chr12132606060132606129+3'-UTR,intron-Proximal3.456437.09278HepG2PPIG
chr12132605133132605147+3'-UTR,intron-Proximal3.466166.13978HepG2PPIG
chr12132598980132599046+3'-UTR,CDS,intron-Proximal3.455415.76944HepG2U2AF2
chr12132604992132605072+3'-UTR4.176096.92541HepG2PPIG
chr12132605072132605133+3'-UTR4.311747.79455HepG2PPIG
chr12132569445132569519+5'-UTR,intron-Distal,intron-Proximal3.527146.58258HepG2PCBP2
chr12132569411132569559+5'-UTR,intron-Distal,intron-Proximal4.184775.47244HepG2LARP4
chr12132569047132569114+5'-UTR,intron-Distal6.8726125.08664HepG2DDX59
chr12132569074132569136+5'-UTR,intron-Distal3.340046.55887HepG2XRN2
chr12132569385132569474+5'-UTR,intron-Distal,intron-Proximal3.945025.16954K562PCBP1
chr12132568869132568940+5'-UTR4.662125.47892K562DDX3X
chr12132569352132569438+5'-UTR,intron-Distal,intron-Proximal6.0404916.86227K562HNRNPK
chr12132569424132569515+5'-UTR,intron-Distal,intron-Proximal5.9640050.46158HepG2HNRNPK
chr12132569438132569545+5'-UTR,intron-Distal,intron-Proximal4.4203118.13440K562HNRNPK
chr12132568994132569041+5'-UTR,intron-Proximal3.992114.89208K562AQR
chr12132568838132568913+5'-UTR4.726165.63689HepG2NCBP2
chr12132569456132569523+5'-UTR,intron-Distal,intron-Proximal3.4279510.69519HepG2XRN2
chr12132569131132569207+5'-UTR,intron-Distal5.7604634.23901HepG2DDX59
chr12132569445132569531+5'-UTR,intron-Distal,intron-Proximal3.582409.22568K562AQR
chr12132569391132569444+5'-UTR,intron-Distal,intron-Proximal7.5989043.48013HepG2DDX59
chr12132569087132569231+5'-UTR,intron-Distal4.2150416.26107K562HNRNPK
chr12132569286132569342+5'-UTR,intron-Distal4.9471919.81867HepG2HNRNPK
chr12132569554132569610+5'-UTR,intron-Distal3.991216.24513HepG2RBM15
chr12132568860132568914+5'-UTR3.053154.38249K562RBM15
chr12132569300132569391+5'-UTR,intron-Distal7.9179947.21102HepG2DDX59
chr12132568979132569047+5'-UTR,intron-Distal,intron-Proximal5.4250724.02757HepG2DDX59
chr12132569292132569384+5'-UTR,intron-Distal5.6808521.02160HepG2PCBP2
chr12132569342132569424+5'-UTR,intron-Distal,intron-Proximal5.3512629.76714HepG2HNRNPK
chr12132569293132569352+5'-UTR,intron-Distal5.5260612.38802K562HNRNPK
chr12132569412132569456+5'-UTR,intron-Distal,intron-Proximal3.040224.62169HepG2XRN2
chr12132569071132569182+5'-UTR,intron-Distal5.0839031.02802HepG2HNRNPK
chr12132568937132569021+5'-UTR,intron-Proximal4.640614.97857HepG2AQR
chr12132569458132569523+5'-UTR,intron-Distal,intron-Proximal3.161735.72619K562DROSHA
chr12132568913132569017+5'-UTR,intron-Proximal3.605654.09778HepG2NCBP2
chr12132569182132569233+5'-UTR,intron-Distal6.1464915.94630HepG2HNRNPK
chr12132569846132569894+5'-UTR,intron-Distal,intron-Proximal4.016274.45914HepG2PRPF8
chr12132569444132569540+5'-UTR,intron-Distal,intron-Proximal7.3230272.92608HepG2DDX59
chr12132569464132569543+5'-UTR,intron-Distal,intron-Proximal4.444404.77050HepG2SF3B4
chr12132569657132569704+5'-UTR,intron-Distal,intron-Proximal3.941833.15006K562RBM15
chr12132593196132593255+CDS,intron-Proximal3.165563.56169K562RBM15
chr12132588707132588724+CDS,intron-Distal,intron-Proximal6.7272719.71511K562AQR
chr12132588744132588760+CDS,intron-Distal,intron-Proximal5.9272922.31003K562AQR
chr12132593115132593209+CDS,intron-Proximal3.528924.30396K562UCHL5
chr12132588760132588801+CDS,intron-Distal,intron-Proximal3.445203.94787K562AQR
chr12132588724132588744+CDS,intron-Distal,intron-Proximal6.8605920.80778K562AQR
chr12132593201132593262+CDS,intron-Proximal3.518929.57589HepG2PRPF8
chr12132589725132589856+CDS,intron-Distal,intron-Proximal4.789246.73025HepG2GRWD1
chr12132593086132593169+CDS,intron-Proximal4.4160315.49278HepG2U2AF2
chr12132589785132589854+CDS,intron-Distal,intron-Proximal3.727319.11524K562UCHL5
chr12132589745132589917+CDS,intron-Distal,intron-Proximal3.630115.97823HepG2BCLAF1
chr12132593112132593173+CDS,intron-Proximal3.912706.08299HepG2PPIG
chr12132588988132589060+CDS,intron-Distal,intron-Proximal5.001774.32014K562XRN2
chr12132603077132603200+intron-Distal4.826863.70058HepG2XPO5
chr12132584635132584727+intron-Distal3.957213.63454HepG2SUGP2
chr12132579091132579162+intron-Distal5.103319.23970HepG2CSTF2T
chr12132580075132580169+intron-Distal3.701693.32156HepG2DDX59
chr12132580158132580217+intron-Distal3.781349.16267K562CSTF2T
chr12132578973132579034+intron-Distal4.438249.56617HepG2CSTF2T
chr12132579188132579286+intron-Distal4.3742011.23710K562ILF3
chr12132579162132579303+intron-Distal3.258575.88353HepG2CSTF2T
chr12132589852132589918+intron-Distal,intron-Proximal4.234654.21433K562PRPF8
chr12132578962132579039+intron-Distal3.407466.41538K562ILF3
chr12132609028132609098+intron-Distal3.359903.41960K562GTF2F1
chr12132608599132608713+intron-Distal5.0053821.75214K562AGGF1
chr12132578966132579023+intron-Distal5.300579.14519K562CSTF2T
chr12132592443132592513+intron-Distal5.311396.83215HepG2U2AF2
chr12132608732132608840+intron-Distal4.650856.13537HepG2AGGF1
chr12132579085132579168+intron-Distal3.438666.64741HepG2DDX59
chr12132578960132579021+intron-Distal5.404585.36996HepG2PCBP2
chr12132579039132579080+intron-Distal3.529354.49507K562ILF3
chr12132588325132588381+intron-Distal4.103113.70058K562CSTF2T
chr12132576615132576717+intron-Distal3.062553.28806K562KHSRP
chr12132580067132580142+intron-Distal3.485276.01711K562CSTF2T
chr12132588467132588521+intron-Distal,intron-Proximal4.341364.84268K562SF3B4
chr12132578962132579028+intron-Distal4.897864.76405HepG2ILF3
chr12132587983132588061+intron-Distal3.991296.22996K562CSTF2T
chr12132579352132579398+intron-Distal5.580999.42242HepG2PCBP2
chr12132603271132603356+intron-Distal3.216973.11000HepG2HNRNPM
chr12132579126132579190+intron-Distal4.059387.13178K562CSTF2T
chr12132588471132588520+intron-Distal,intron-Proximal5.9457315.15276HepG2SF3B4
chr12132578698132578752+intron-Distal4.382335.25643K562ILF3
chr12132608713132608934+intron-Distal4.4375332.67859K562AGGF1
chr12132582978132583034+intron-Distal3.101603.42293HepG2HNRNPC
chr12132580227132580320+intron-Distal5.117939.69896K562CSTF2T
chr12132579080132579157+intron-Distal3.678198.91304K562ILF3
chr12132579169132579240+intron-Distal4.105376.13941HepG2DDX59
chr12132579168132579281+intron-Distal5.1038610.06964HepG2PCBP2
chr12132579311132579340+intron-Distal5.5484811.47623HepG2PCBP2
chr12132608721132608864+intron-Distal3.040253.91282HepG2HNRNPL
chr12132580072132580140+intron-Distal3.714184.20880HepG2GTF2F1
chr12132579034132579091+intron-Distal3.502864.92762HepG2CSTF2T
chr12132578877132578960+intron-Distal3.628313.38192HepG2PCBP2
chr12132603343132603457+intron-Distal3.171403.54602K562TIA1
chr12132579080132579152+intron-Distal3.292987.29805HepG2GTF2F1
chr12132579312132579339+intron-Distal4.205643.30705HepG2GTF2F1
chr12132593758132593849+intron-Distal5.7831124.31537HepG2PCBP2
chr12132579082132579150+intron-Distal4.459294.25479HepG2PCBP2
chr12132571098132571191+intron-Distal3.153424.10408K562KHSRP
chr12132578915132578966+intron-Distal3.946199.16267K562CSTF2T
chr12132579198132579302+intron-Distal3.656794.98114HepG2ILF3
chr12132575708132575819+intron-Distal4.316628.75974K562KHSRP
chr12132573731132573756+intron-Distal3.910713.25538K562KHSRP
chr12132580505132580558+intron-Distal4.183064.58544K562ILF3
chr12132586558132586659+intron-Distal3.869323.14687K562CSTF2T
chr12132584600132584697+intron-Distal4.139714.23759K562NONO
chr12132579152132579268+intron-Distal4.178179.12509HepG2GTF2F1
chr12132609270132609360+intron-Distal3.322903.41960K562GTF2F1
chr12132570331132570426+intron-Distal3.012825.82536K562CSTF2T
chr12132588061132588148+intron-Distal5.2427910.47310K562CSTF2T
chr12132579073132579126+intron-Distal4.583505.81141K562CSTF2T
chr12132578962132579018+intron-Distal3.694106.42324HepG2GTF2F1
chr12132601512132601600+intron-Distal3.419643.90822HepG2HNRNPM
chr12132593554132593585+intron-Distal3.155384.35314HepG2U2AF2
chr12132569979132570037+intron-Distal4.163085.09344HepG2XPO5
chr12132579370132579405+intron-Distal4.128853.08243K562ILF3
chr12132579361132579401+intron-Distal4.535703.60414HepG2DDX59
chr12132608960132609048+intron-Distal6.7406824.52856K562AGGF1
chr12132609030132609088+intron-Distal4.485455.88023HepG2HNRNPL
chr12132600173132600279+intron-Distal4.018597.58130HepG2HNRNPM
chr12132608936132608996+intron-Distal3.535783.76460HepG2HNRNPL
chr12132580076132580147+intron-Distal3.540533.62066K562ILF3
chr12132578919132578973+intron-Distal3.057634.86139HepG2CSTF2T
chr12132584037132584107+intron-Distal3.697205.20418HepG2HNRNPC
chr12132608963132609101+intron-Distal4.248834.71638K562HNRNPL
chr12132568956132568994+intron-Proximal4.778569.56266K562AQR
chr12132568944132568956+intron-Proximal4.292565.47926K562AQR
chr12132604899132604964+intron-Proximal4.122233.25678HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for EP400NL is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for EP400NL is not available on ENCORE database.

  • 65 RBPs can affect the levels of EP400NL.  








The Knockdown/knockout RNA-Seq assay for EP400NL is not available on ENCORE database.





65 RBPs can affect the gene expression of EP400NL :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
EP400NLENSG00000185684.8230.54930350.58580-0.604703.501102.83680HepG2BOP1
EP400NLENSG00000185684.8206.11990134.809100.612502.274101.70210HepG2DDX3X
EP400NLENSG00000185684.8240.79030365.49340-0.602102.281901.39690HepG2DDX59
EP400NLENSG00000185684.8293.23920198.384700.563702.443101.57430HepG2EEF2
EP400NLENSG00000185684.8251.12430111.323501.173507.399106.46460HepG2EIF2S1
EP400NLENSG00000185684.8270.93370123.002801.139107.299106.26130HepG2EIF4A3
EP400NLENSG00000185684.8255.33010119.804001.091605.476004.53190HepG2EIF4B
EP400NLENSG00000185684.8167.30830102.109600.712302.842302.04510HepG2FUBP3
EP400NLENSG00000185684.8239.59060124.173700.948105.198704.27070HepG2FXR1
EP400NLENSG00000185684.8289.86610115.153001.3317010.254109.01600HepG2G3BP1
EP400NLENSG00000185684.8210.65530122.297100.784403.520802.50960HepG2G3BP2
EP400NLENSG00000185684.8315.20960116.687601.4336012.0658010.70770HepG2HNRNPK
EP400NLENSG00000185684.8203.25930117.037600.796202.242001.62680HepG2IGF2BP2
EP400NLENSG00000185684.8272.12870109.886701.308204.497603.25320HepG2IGF2BP3
EP400NLENSG00000185684.8256.86790181.831400.498302.744702.01480HepG2ILF2
EP400NLENSG00000185684.8249.52170117.744001.083405.709204.21780HepG2KHSRP
EP400NLENSG00000185684.8514.33200327.677100.650303.762802.79150HepG2LARP4
EP400NLENSG00000185684.8394.27180124.217301.6662017.4268015.85440HepG2MAGOH
EP400NLENSG00000185684.8246.57390124.901300.981105.033004.20450HepG2MATR3
EP400NLENSG00000185684.8334.84580127.834301.3891011.3465010.10650HepG2NCBP2
EP400NLENSG00000185684.8289.62770113.802901.3476010.621409.22700HepG2PABPC4
EP400NLENSG00000185684.8245.66490176.203100.479402.376201.58610HepG2PARN
EP400NLENSG00000185684.8233.29220115.626301.012607.500206.57940HepG2PCBP1
EP400NLENSG00000185684.8250.73910117.663501.091408.494107.64450HepG2PTBP1
EP400NLENSG00000185684.8334.58330236.992900.497402.231501.68680HepG2PUM1
EP400NLENSG00000185684.8331.66100236.842200.485701.879301.32080HepG2PUM2
EP400NLENSG00000185684.8290.04730127.412401.186709.911608.83170HepG2QKI
EP400NLENSG00000185684.8186.65500115.642500.690603.082102.37430HepG2RBM25
EP400NLENSG00000185684.8323.21300130.940401.3035012.7534011.74890HepG2NELFE
EP400NLENSG00000185684.8294.91820121.967301.2737012.0013010.85350HepG2RECQL
EP400NLENSG00000185684.8210.72160295.12420-0.486002.485101.83200HepG2RPLP0
EP400NLENSG00000185684.8288.48330122.486001.2358011.1012010.03780HepG2SF3B4
EP400NLENSG00000185684.8272.58890127.855801.092108.634607.90520HepG2SRSF1
EP400NLENSG00000185684.8151.88330104.023400.546002.206701.70230HepG2SRSF9
EP400NLENSG00000185684.8423.67710341.006500.313101.733201.30420HepG2SSB
EP400NLENSG00000185684.8362.08450250.715400.530202.323001.74310HepG2SUCLG1
EP400NLENSG00000185684.8229.26240114.940800.996006.857806.04360HepG2TAF15
EP400NLENSG00000185684.8163.11500105.594700.627302.631901.81530HepG2TIA1
EP400NLENSG00000185684.8340.96830218.083100.644703.561302.55680HepG2TUFM
EP400NLENSG00000185684.8162.99730108.094000.592502.016601.36790HepG2UCHL5
EP400NLENSG00000185684.8492.15030958.18690-0.9612019.2578017.87770K562AGGF1
EP400NLENSG00000185684.8828.529401052.83310-0.345702.675401.71370K562AKAP8
EP400NLENSG00000185684.8630.38200997.01980-0.661407.600806.46990K562AKAP8L
EP400NLENSG00000185684.8829.679101046.08150-0.334403.247802.25310K562ATP5C1
EP400NLENSG00000185684.8408.12270588.17330-0.527203.508802.52660K562BOP1
EP400NLENSG00000185684.8447.14580334.081200.420402.384601.42080K562CCAR1
EP400NLENSG00000185684.8919.832401145.14150-0.316102.821601.63270K562CCDC124
EP400NLENSG00000185684.8399.46650625.38920-0.646706.275305.09570K562CPSF6
EP400NLENSG00000185684.8832.751301124.21420-0.433003.747902.03580K562DDX19B
EP400NLENSG00000185684.8802.267701072.97200-0.419504.935503.71430K562DKC1
EP400NLENSG00000185684.8577.79890402.362700.522002.901302.06110K562EIF4A3
EP400NLENSG00000185684.8460.99840666.32650-0.531504.219203.15500K562FIP1L1
EP400NLENSG00000185684.8466.17760636.33380-0.448903.043702.14330K562FMR1
EP400NLENSG00000185684.8253.25270357.71850-0.498202.850601.39360K562G3BP1
EP400NLENSG00000185684.8607.51710837.89430-0.463803.784402.90480K562GRSF1
EP400NLENSG00000185684.8544.26040903.40600-0.731107.869206.54460K562HSPD1
EP400NLENSG00000185684.8672.166301058.14720-0.654707.210305.72660K562KIF1C
EP400NLENSG00000185684.8718.571301012.85860-0.495204.118902.72920K562MAK16
EP400NLENSG00000185684.8789.132401185.38370-0.587007.247205.64190K562MBNL1
EP400NLENSG00000185684.8474.96580830.86290-0.806805.269303.91560K562NAA15
EP400NLENSG00000185684.8360.13140631.96510-0.811303.591102.42220K562PABPN1
EP400NLENSG00000185684.8498.01960756.40340-0.603005.372704.16780K562PPIG
EP400NLENSG00000185684.8939.579501158.68240-0.302402.349101.46290K562PUM2
EP400NLENSG00000185684.8420.04230988.89250-1.2353018.9273017.53970K562PUS1
EP400NLENSG00000185684.8559.26610963.42530-0.7846012.2197010.97760K562RBM15
EP400NLENSG00000185684.8119.27730225.85820-0.921105.516303.55530K562RBM25
EP400NLENSG00000185684.8196.50380324.96390-0.725703.528202.00950K562RRP9
EP400NLENSG00000185684.8599.77750798.61710-0.413104.152803.16630K562SF3A3
EP400NLENSG00000185684.8409.31350663.71290-0.697402.685801.48200K562SNRNP200
EP400NLENSG00000185684.8469.98750365.631700.362102.108001.40090K562TIA1
EP400NLENSG00000185684.8709.75390884.11440-0.316902.157001.40530K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for EP400NL is not available on ENCORE database.





1 RBPs can affect the splicing of EP400NL :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RIEP400NLENSG00000185684.8chr12+132588541132589849132588541132588715132589111132589849-0.673000.005430.09127excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for EP400NL is not avaliable on ENCORE database.