CDC23

General Information

Gene Name       : CDC23
Gene ID             : ENSG00000094880.10
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CDC23)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CDC23ENSG00000094880.1048.3535.0041.67ENCSR000AEF
HepG2CDC23ENSG00000094880.1024.4142.6733.54ENCSR985KAT
K562CDC23ENSG00000094880.1046.8752.3749.62ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CDC23 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CDC23 RNA is bound by 16 proteins.  







eCLIP assay for CDC23 is not avaliable on ENCORE database.





16 proteins are bound to CDC23 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5137523776137523821-3'-UTR,intron-Distal3.614908.64357K562UPF1
chr5137524222137524258-3'-UTR,intron-Distal3.945957.87505K562UPF1
chr5137523758137523817-3'-UTR,intron-Distal4.567287.89398K562FAM120A
chr5137523646137523788-3'-UTR,intron-Distal4.5024310.11666K562LIN28B
chr5137536805137536855-3'-UTR,CDS,intron-Distal,intron-Proximal5.268438.81740K562RPS3
chr5137524154137524222-3'-UTR,intron-Distal4.8955911.97213K562UPF1
chr5137537031137537078-3'-UTR,CDS,intron-Distal,intron-Proximal3.730803.02850K562YBX3
chr5137524303137524347-3'-UTR,intron-Distal3.283766.64080K562FAM120A
chr5137524229137524303-3'-UTR,intron-Distal4.232369.46526K562FAM120A
chr5137523696137523730-3'-UTR,intron-Distal4.019144.82552K562UPF1
chr5137536812137536884-3'-UTR,CDS,intron-Distal,intron-Proximal3.846594.46864HepG2BCLAF1
chr5137524258137524312-3'-UTR,intron-Distal3.665358.00041K562UPF1
chr5137524638137524775-3'-UTR,CDS,intron-Distal,intron-Proximal3.096383.23853K562IGF2BP2
chr5137524640137524739-3'-UTR,CDS,intron-Distal,intron-Proximal3.102653.08258K562TIA1
chr5137523372137523478-3'-UTR,intron-Distal3.171403.54602K562TIA1
chr5137523745137523819-3'-UTR,intron-Distal4.529905.03175K562IGF2BP1
chr5137524029137524082-3'-UTR,intron-Distal5.048237.35154K562UPF1
chr5137548895137549007-5'-UTR,CDS,intron-Distal,intron-Proximal4.1878710.17596K562DDX3X
chr5137534250137534305-CDS,intron-Distal,intron-Proximal4.010923.31283K562PRPF8
chr5137524696137524770-CDS,intron-Distal,intron-Proximal3.294664.53005K562YBX3
chr5137537805137537854-CDS,intron-Distal,intron-Proximal4.003713.56076K562BUD13
chr5137524792137524838-CDS,intron-Distal,intron-Proximal5.3826912.47556K562LIN28B
chr5137524784137524858-CDS,intron-Distal,intron-Proximal5.762966.72588HepG2BUD13
chr5137525391137525489-CDS,intron-Distal,intron-Proximal5.324687.81477K562SF3B4
chr5137548849137548895-CDS,intron-Distal,intron-Proximal3.513633.08493K562DDX3X
chr5137528258137528339-CDS,intron-Distal3.100483.53125K562DDX24
chr5137534075137534127-CDS,intron-Distal,intron-Proximal3.554953.76553K562PRPF8
chr5137524789137524877-CDS,intron-Distal,intron-Proximal3.233435.07297K562BUD13
chr5137525320137525384-CDS,intron-Distal,intron-Proximal4.733946.86924K562LIN28B
chr5137538792137538889-intron-Distal5.024606.19339K562PTBP1
chr5137538759137538873-intron-Distal4.214823.41738HepG2PTBP1
chr5137525662137525752-intron-Distal,intron-Proximal4.006313.42844K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CDC23 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CDC23 is not available on ENCORE database.

  • 74 RBPs can affect the levels of CDC23.  








The Knockdown/knockout RNA-Seq assay for CDC23 is not available on ENCORE database.





74 RBPs can affect the gene expression of CDC23 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CDC23ENSG00000094880.61898.651901496.005000.343802.119901.64760HepG2AKAP1
CDC23ENSG00000094880.61290.76910858.398100.588403.415802.55880HepG2CNOT7
CDC23ENSG00000094880.61436.206801155.986300.313002.226801.60200HepG2CPSF6
CDC23ENSG00000094880.61114.454601450.73470-0.380404.847504.04060HepG2CELF1
CDC23ENSG00000094880.61238.022901559.93010-0.333405.273004.29500HepG2DAZAP1
CDC23ENSG00000094880.6778.562901044.82630-0.424404.541303.07790HepG2DDX1
CDC23ENSG00000094880.6743.420101000.10590-0.427902.665201.90330HepG2DDX55
CDC23ENSG00000094880.6962.956101230.89540-0.354202.007601.47410HepG2DDX6
CDC23ENSG00000094880.6836.381101024.52090-0.292702.538701.86060HepG2DNAJC21
CDC23ENSG00000094880.6830.505401015.43050-0.290003.219902.52540HepG2DNAJC2
CDC23ENSG00000094880.6760.812601183.49660-0.637405.656504.82600HepG2EIF2S1
CDC23ENSG00000094880.6881.120401273.33330-0.531203.298102.55000HepG2EIF4B
CDC23ENSG00000094880.6985.081201474.20880-0.581606.408305.19110HepG2EIF4G2
CDC23ENSG00000094880.6608.41340916.53090-0.591105.836504.27670HepG2FASTKD2
CDC23ENSG00000094880.61162.18050872.418700.413603.756702.84910HepG2FUBP3
CDC23ENSG00000094880.6911.444901224.11230-0.425502.910002.22800HepG2G3BP1
CDC23ENSG00000094880.61433.862301150.492700.317602.382001.73390HepG2HNRNPC
CDC23ENSG00000094880.6948.031301239.15250-0.386302.902602.18650HepG2HNRNPK
CDC23ENSG00000094880.61087.642201420.98730-0.385706.319905.34020HepG2HNRNPL
CDC23ENSG00000094880.6917.605101142.88740-0.316703.560302.88060HepG2HNRNPU
CDC23ENSG00000094880.6991.629301319.87650-0.412502.849602.18530HepG2MAGOH
CDC23ENSG00000094880.61079.982201358.61870-0.331101.985401.44430HepG2NCBP2
CDC23ENSG00000094880.6844.865801546.82170-0.8725018.7846016.91150HepG2NOL12
CDC23ENSG00000094880.6946.555501210.12260-0.354402.250601.59440HepG2PABPC4
CDC23ENSG00000094880.6670.438101131.28100-0.7548014.7872013.09390HepG2PARN
CDC23ENSG00000094880.61695.358101171.180500.533509.844208.51860HepG2PRPF4
CDC23ENSG00000094880.61202.002801476.56710-0.296802.341701.78670HepG2PUF60
CDC23ENSG00000094880.61280.143501567.43010-0.292104.223903.52460HepG2PUM1
CDC23ENSG00000094880.61297.895101106.205300.230502.345801.76760HepG2PUS1
CDC23ENSG00000094880.61076.216301356.96960-0.334403.289302.61650HepG2QKI
CDC23ENSG00000094880.61026.884801298.70400-0.338803.937003.21860HepG2RECQL
CDC23ENSG00000094880.6583.91850828.87280-0.505404.445003.68470HepG2RPS19
CDC23ENSG00000094880.6833.812301165.13560-0.482703.753602.82630HepG2RPS2
CDC23ENSG00000094880.6603.99500831.97220-0.462003.171302.16280HepG2SERBP1
CDC23ENSG00000094880.61109.284001304.47700-0.233802.165401.63290HepG2SF3B4
CDC23ENSG00000094880.61011.848701186.94150-0.230302.468701.85630HepG2SMN1
CDC23ENSG00000094880.6739.944501080.06810-0.545603.679401.81180HepG2SND1
CDC23ENSG00000094880.61066.157701669.20750-0.6467015.5748014.64010HepG2SRFBP1
CDC23ENSG00000094880.62471.825101361.592600.8602021.2374020.18650HepG2SRSF1
CDC23ENSG00000094880.6900.732601107.72890-0.298403.226302.63950HepG2SRSF9
CDC23ENSG00000094880.61746.300501449.262500.268903.312402.76260HepG2SSB
CDC23ENSG00000094880.6784.88620995.57300-0.343001.906101.33050HepG2SUPV3L1
CDC23ENSG00000094880.6624.649801110.58290-0.8302013.8840012.91220HepG2TIAL1
CDC23ENSG00000094880.6962.972901120.45250-0.218501.978001.48590HepG2TRIM56
CDC23ENSG00000094880.61146.807901526.87840-0.413002.858502.00910HepG2UBE2L3
CDC23ENSG00000094880.6411.45730588.10400-0.515303.488402.64030HepG2UCHL5
CDC23ENSG00000094880.62030.325401319.547600.6216015.1175013.88570HepG2UTP3
CDC23ENSG00000094880.6973.255901155.81490-0.248002.571901.92030HepG2ZC3H8
CDC23ENSG00000094880.63474.520902548.646700.4470010.269609.26650K562AGGF1
CDC23ENSG00000094880.63159.355302651.984400.252502.077301.50860K562AKAP8L
CDC23ENSG00000094880.63406.017802782.573800.291603.826602.73750K562ATP5C1
CDC23ENSG00000094880.61675.752102253.10930-0.427104.387202.75910K562CIRBP
CDC23ENSG00000094880.62520.565203312.59650-0.394206.745004.98270K562CPEB4
CDC23ENSG00000094880.61076.527201392.15060-0.370904.111802.79000K562CSTF2
CDC23ENSG00000094880.61312.987901642.31380-0.322902.809101.75930K562DDX3X
CDC23ENSG00000094880.63940.251902853.712900.465309.520607.69360K562DKC1
CDC23ENSG00000094880.61955.582402385.57130-0.286703.527202.73020K562EIF2S2
CDC23ENSG00000094880.61382.172201785.61640-0.369503.587101.74650K562FASTKD2
CDC23ENSG00000094880.62708.552601923.663500.493603.603002.77170K562G3BP2
CDC23ENSG00000094880.62038.428803179.03800-0.6411011.124809.58270K562GRSF1
CDC23ENSG00000094880.63562.171502814.411400.339803.629002.66830K562KIF1C
CDC23ENSG00000094880.61831.569202209.36070-0.270502.270701.50500K562MAGOH
CDC23ENSG00000094880.61590.086702204.96260-0.471606.037504.60160K562MATR3
CDC23ENSG00000094880.61584.492102359.63690-0.5745014.5280012.84760K562MTPAP
CDC23ENSG00000094880.63388.954302209.922000.616705.580304.17140K562NAA15
CDC23ENSG00000094880.61926.027201497.997400.362502.978802.20120K562PRPF8
CDC23ENSG00000094880.63571.028102630.027100.441204.682203.99980K562PUS1
CDC23ENSG00000094880.63344.748902562.576600.384205.951405.10900K562RBM15
CDC23ENSG00000094880.62162.732401759.804300.297302.592201.54790K562SAFB
CDC23ENSG00000094880.62056.257802586.98250-0.331204.630103.59790K562SF3A3
CDC23ENSG00000094880.63262.723102104.214900.6327011.5507010.11670K562SRSF1
CDC23ENSG00000094880.62324.181601980.936700.230402.057201.34790K562SYNCRIP
CDC23ENSG00000094880.61659.711102129.73630-0.359702.983602.24890K562TARDBP
CDC23ENSG00000094880.61735.371902054.33610-0.243402.044901.34840K562TIA1
CDC23ENSG00000094880.61173.847201747.43080-0.574005.723604.32630K562TIAL1
CDC23ENSG00000094880.62541.196901864.887100.446303.656602.36210K562U2AF1
CDC23ENSG00000094880.62412.301501925.946600.324703.612702.69360K562U2AF2
CDC23ENSG00000094880.63199.145002779.983300.202502.495301.81100K562UPF1
CDC23ENSG00000094880.62232.752803229.50720-0.532505.291803.63220K562UTP3
CDC23ENSG00000094880.62955.423502473.566600.256704.070703.05850K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CDC23 is not available on ENCORE database.





8 RBPs can affect the splicing of CDC23 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECDC23ENSG00000094880.6chr5-137548679137548752137542235137542373137548840137548993-0.189000.000000.00002excludedK562SF3B4
SECDC23ENSG00000094880.6chr5-137534293137534519137534114137534212137536795137536928-0.061000.000580.00775excludedK562AQR
SECDC23ENSG00000094880.6chr5-137537801137537844137537031137537157137542235137542373-0.056000.000140.00230excludedK562AQR
SECDC23ENSG00000094880.6chr5-137548679137548752137541559137542373137548840137548993-0.177000.000000.00010excludedK562U2AF1
SECDC23ENSG00000094880.6chr5-137548679137548752137542235137542373137548840137548993-0.204000.000000.00002excludedK562U2AF2
A3SSCDC23ENSG00000094880.6chr5-1375370311375371571375370311375371371375422351375423730.511000.004310.02538longerK562AQR
A3SSCDC23ENSG00000094880.6chr5-1375275501375277781375275501375276261375279571375280770.054000.000030.00031longerK562AQR
A3SSCDC23ENSG00000094880.6chr5-1375255161375256411375255161375255951375271621375272400.124000.000000.00002longerK562AQR
A3SSCDC23ENSG00000094880.6chr5-1375271621375272741375271621375272241375275501375280770.099000.000000.00000longerK562AQR
RICDC23ENSG00000094880.6chr5-1375275501375280771375275501375276261375279571375280770.072000.001250.00908includedK562PUS1
RICDC23ENSG00000094880.6chr5-1375253581375256071375253581375254411375255161375256070.093000.001210.00877includedK562PUS1
RICDC23ENSG00000094880.6chr5-1375253581375256071375253581375254411375255161375256070.118000.000090.00157includedK562RBM15
RICDC23ENSG00000094880.6chr5-1375253581375256071375253581375254411375255161375256070.141000.000010.00039includedHepG2NCBP2
RICDC23ENSG00000094880.6chr5-1375275501375280771375275501375276261375279571375280770.054000.000360.00262includedK562AQR
RICDC23ENSG00000094880.6chr5-1375253581375256071375253581375254411375255161375256070.183000.000000.00000includedK562AQR
MXECDC23ENSG00000094880.6chr5-137525516137525595137527162137527224137525358137525441137527550137528077-0.150000.005840.084162includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CDC23 is not avaliable on ENCORE database.