CCNDBP1

General Information

Gene Name       : CCNDBP1
Gene ID             : ENSG00000166946.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCNDBP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCNDBP1ENSG00000166946.1334.0830.7332.41ENCSR000AEF
HepG2CCNDBP1ENSG00000166946.1313.4716.9915.23ENCSR985KAT
K562CCNDBP1ENSG00000166946.1341.6840.2740.98ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCNDBP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCNDBP1 RNA is bound by 15 proteins.  







eCLIP assay for CCNDBP1 is not avaliable on ENCORE database.





15 proteins are bound to CCNDBP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr154348139743481481+3'-UTR,5'-UTR,CDS,intron-Proximal3.106335.54400K562YBX3
chr154348500043485012+3'-UTR,CDS,intron-Proximal3.060863.93669K562AQR
chr154348375843483871+3'-UTR,CDS3.104524.85261K562DDX24
chr154348246743482530+3'-UTR,CDS,intron-Proximal3.645204.64775K562SF3B4
chr154348317343483241+3'-UTR,CDS,intron-Proximal3.383203.84837K562GRWD1
chr154348370143483826+3'-UTR,CDS3.873585.48036K562PUM1
chr154348690043486953+3'-UTR,CDS,intron-Proximal3.729085.83621K562AQR
chr154348359143483724+3'-UTR,CDS,intron-Proximal3.117253.14203K562LIN28B
chr154348323343483288+3'-UTR,CDS,intron-Proximal4.077676.32052K562AQR
chr154348139443481471+3'-UTR,5'-UTR,CDS,intron-Proximal5.014906.92353K562BUD13
chr154348378443483859+3'-UTR,CDS3.876694.71060K562BUD13
chr154348366943483783+3'-UTR,CDS3.994805.85226K562UCHL5
chr154348381143483874+3'-UTR,CDS,intron-Proximal4.256603.71570HepG2BCLAF1
chr154347789443478036+5'-UTR,CDS,intron-Distal,intron-Proximal3.6229212.67123K562PRPF8
chr154347769243477801+5'-UTR,CDS3.236995.63246K562FTO
chr154347773843477805+5'-UTR,CDS3.743356.59200K562DDX3X
chr154347774643477800+5'-UTR,CDS4.448364.48994K562RBM15
chr154347762443477738+5'-UTR,CDS4.901109.68900K562DDX3X
chr154347812443478197+intron-Distal,intron-Proximal4.305053.81597K562RBM15
chr154347792043478016+intron-Distal,intron-Proximal3.476496.37739K562BUD13
chr154347791443477974+intron-Distal,intron-Proximal3.445394.57350K562RBFOX2
chr154348501243485045+intron-Proximal3.916117.30031K562AQR
chr154348133943481389+intron-Proximal4.798914.90235K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCNDBP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCNDBP1 is not available on ENCORE database.

  • 61 RBPs can affect the levels of CCNDBP1.  








The Knockdown/knockout RNA-Seq assay for CCNDBP1 is not available on ENCORE database.





61 RBPs can affect the gene expression of CCNDBP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCNDBP1ENSG00000166946.9574.17790376.735700.607806.968506.09200HepG2ACO1
CCNDBP1ENSG00000166946.91237.40880646.066400.9375010.222509.26560HepG2AKAP1
CCNDBP1ENSG00000166946.9550.74700378.469000.541105.293804.26540HepG2AKAP8L
CCNDBP1ENSG00000166946.9669.03210539.952800.309102.291901.69740HepG2CELF1
CCNDBP1ENSG00000166946.984.88300310.44890-1.8708014.4320011.86140HepG2DDX27
CCNDBP1ENSG00000166946.9122.92300251.35160-1.032005.953404.01070HepG2DDX28
CCNDBP1ENSG00000166946.91043.34870618.899400.753307.611406.62090HepG2DDX3X
CCNDBP1ENSG00000166946.9487.48960331.792200.555002.910702.12040HepG2DDX55
CCNDBP1ENSG00000166946.9454.10620348.032600.383702.500301.82790HepG2DNAJC21
CCNDBP1ENSG00000166946.9388.01970267.189700.538202.694201.78260HepG2EEF2
CCNDBP1ENSG00000166946.9392.85380511.08670-0.379601.838101.34210HepG2EIF2S1
CCNDBP1ENSG00000166946.9354.44980564.82970-0.672204.530203.71540HepG2EIF4A3
CCNDBP1ENSG00000166946.9449.45510572.78100-0.349802.671601.84590HepG2EIF4G1
CCNDBP1ENSG00000166946.9245.87970368.09890-0.582103.770002.79480HepG2EWSR1
CCNDBP1ENSG00000166946.9262.27170351.36710-0.421901.982101.42390HepG2HNRNPA1
CCNDBP1ENSG00000166946.9658.13640533.576200.302602.237301.38750HepG2HNRNPA2B1
CCNDBP1ENSG00000166946.9672.23720528.879100.345903.102102.39140HepG2HNRNPL
CCNDBP1ENSG00000166946.9392.96560540.46720-0.459802.183301.30540HepG2KHSRP
CCNDBP1ENSG00000166946.9438.49240573.23100-0.386601.826601.30880HepG2MATR3
CCNDBP1ENSG00000166946.9325.24760525.40460-0.691907.575606.65020HepG2PCBP1
CCNDBP1ENSG00000166946.9206.09220328.14690-0.671103.454701.58050HepG2PHF6
CCNDBP1ENSG00000166946.9193.66300262.24840-0.437402.169101.47720HepG2PRPF4
CCNDBP1ENSG00000166946.9599.33630333.221700.846804.549003.65740HepG2RAVER1
CCNDBP1ENSG00000166946.9914.27950606.833900.591207.759406.99290HepG2RBM22
CCNDBP1ENSG00000166946.9475.14220594.98060-0.324502.123301.63700HepG2NELFE
CCNDBP1ENSG00000166946.9441.64920554.14960-0.327402.182801.62680HepG2RECQL
CCNDBP1ENSG00000166946.9205.55920345.75280-0.750206.536905.60910HepG2SAFB2
CCNDBP1ENSG00000166946.9379.46660526.94110-0.473704.304503.45740HepG2SLBP
CCNDBP1ENSG00000166946.9440.93820220.614200.999006.064204.90090HepG2SNRNP70
CCNDBP1ENSG00000166946.9829.06420685.415700.274402.386801.91020HepG2SRFBP1
CCNDBP1ENSG00000166946.9477.44350580.97720-0.283201.780301.37700HepG2SRSF1
CCNDBP1ENSG00000166946.9455.04800595.13650-0.387203.053302.52000HepG2SSB
CCNDBP1ENSG00000166946.9544.16940330.295200.720204.741003.89220HepG2SUPV3L1
CCNDBP1ENSG00000166946.9337.84230522.21310-0.628305.798305.03770HepG2TAF15
CCNDBP1ENSG00000166946.9265.93570377.23270-0.504403.222602.68980HepG2TIAL1
CCNDBP1ENSG00000166946.9301.47750380.63550-0.336402.057801.55790HepG2TRIM56
CCNDBP1ENSG00000166946.9157.71040258.78700-0.714504.673603.83830HepG2ZC3H8
CCNDBP1ENSG00000166946.9372.79480287.421100.375102.432601.91020HepG2ZNF622
CCNDBP1ENSG00000166946.91835.471801458.708600.331402.825402.16490K562AKAP8L
CCNDBP1ENSG00000166946.9723.60190515.218300.489903.393102.42670K562BOP1
CCNDBP1ENSG00000166946.9745.26610547.761500.444102.994402.17850K562CPSF6
CCNDBP1ENSG00000166946.92821.267002255.326100.322902.545601.61020K562CELF1
CCNDBP1ENSG00000166946.9403.99780833.32580-1.0445021.3800018.21920K562DDX27
CCNDBP1ENSG00000166946.91030.102001569.71230-0.6077010.874808.90010K562DKC1
CCNDBP1ENSG00000166946.91179.95010808.770300.544803.887402.33480K562EEF2
CCNDBP1ENSG00000166946.9279.43160434.98110-0.638502.915301.88070K562EIF3A
CCNDBP1ENSG00000166946.91167.50430763.464700.612706.895805.50500K562FIP1L1
CCNDBP1ENSG00000166946.91074.49370833.029700.367103.021601.61370K562FUS
CCNDBP1ENSG00000166946.91018.53030819.035200.314402.818601.66760K562GLRX3
CCNDBP1ENSG00000166946.9775.95750522.926700.569304.845803.79810K562GPKOW
CCNDBP1ENSG00000166946.91835.487401465.601500.324602.817402.05550K562GRSF1
CCNDBP1ENSG00000166946.9931.19150714.082500.382902.900002.29160K562HNRNPC
CCNDBP1ENSG00000166946.91467.373701035.018200.503505.093604.02720K562HSPD1
CCNDBP1ENSG00000166946.9900.780301263.74620-0.488505.310604.13550K562MAGOH
CCNDBP1ENSG00000166946.91235.15940956.736400.368405.567804.56410K562NSUN2
CCNDBP1ENSG00000166946.9508.58190697.31320-0.455303.642401.97730K562PHF6
CCNDBP1ENSG00000166946.9910.80030727.911500.323302.479001.72330K562POLR2G
CCNDBP1ENSG00000166946.91202.94070866.763500.472804.339303.28110K562PPIG
CCNDBP1ENSG00000166946.9928.573601227.79070-0.403004.023503.23690K562PTBP1
CCNDBP1ENSG00000166946.92151.955201446.681400.572806.685105.88330K562PUS1
CCNDBP1ENSG00000166946.91868.879301409.537700.406905.360904.56070K562RBM15
CCNDBP1ENSG00000166946.91100.24030777.568000.500703.148501.72560K562RRP9
CCNDBP1ENSG00000166946.9840.599501027.75240-0.290002.242301.52040K562U2AF2
CCNDBP1ENSG00000166946.91185.546801014.451100.224802.042901.41940K562UPF1
CCNDBP1ENSG00000166946.91103.63750800.646500.462903.343602.01860K562UTP3
CCNDBP1ENSG00000166946.91193.19520868.028500.458904.803303.63320K562WDR3
CCNDBP1ENSG00000166946.92566.336502092.396100.294502.576301.74960K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCNDBP1 is not available on ENCORE database.





17 RBPs can affect the splicing of CCNDBP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCNDBP1ENSG00000166946.9chr15+434822524348234943481396434814784348252243482596-0.097000.003500.05627excludedK562SF3B4
SECCNDBP1ENSG00000166946.9chr15+4347835143478431434780174347807743481396434814780.058000.000480.00658includedK562AQR
SECCNDBP1ENSG00000166946.9chr15+434822524348234943481396434814784348252243482596-0.214000.000110.01761excludedHepG2TAF15
SECCNDBP1ENSG00000166946.9chr15+434822524348234943481396434814784348252243482596-0.137000.000240.00595excludedK562U2AF2
SECCNDBP1ENSG00000166946.9chr15+4348627843486335434849404348500143486612434866590.066000.001840.05996includedK562HNRNPU
SECCNDBP1ENSG00000166946.9chr15+4348627843486335434849404348500143486612434866590.165000.000000.00002includedHepG2HNRNPC
SECCNDBP1ENSG00000166946.9chr15+4348627843486335434849404348500143486612434866590.089000.000090.00616includedK562PTBP1
SECCNDBP1ENSG00000166946.9chr15+4348225243482349434813964348147843482522434825960.101000.000110.02837includedK562NPM1
SECCNDBP1ENSG00000166946.9chr15+4348627843486335434849404348500143486612434866590.420000.000000.00000includedK562HNRNPC
SECCNDBP1ENSG00000166946.9chr15+434780174347843143477315434778054348139643481478-0.250000.000000.00012excludedK562HNRNPC
SECCNDBP1ENSG00000166946.9chr15+434822524348234943481396434814784348252243482596-0.126000.000790.01583excludedK562HNRNPC
A3SSCCNDBP1ENSG00000166946.9chr15+4348627843486659434866124348665943484940434850010.113000.000000.00148longerHepG2HNRNPC
A3SSCCNDBP1ENSG00000166946.9chr15+4348627843486659434866124348665943484940434850010.305000.000000.00000longerK562HNRNPC
A3SSCCNDBP1ENSG00000166946.9chr15+4348627843486659434866124348665943484940434850010.064000.000120.02157longerK562PRPF8
A5SSCCNDBP1ENSG00000166946.9chr15+4347801743478431434780174347807743481396434814780.078000.000380.00833longerK562AQR
RICCNDBP1ENSG00000166946.9chr15+4347801743478431434780174347807743478351434784310.107000.004560.05826includedK562SF3B4
RICCNDBP1ENSG00000166946.9chr15+4347801743478431434780174347807743478351434784310.135000.000100.00092includedK562PUS1
RICCNDBP1ENSG00000166946.9chr15+434862784348665943486278434863354348661243486659-0.362000.000510.01487excludedK562HNRNPC
RICCNDBP1ENSG00000166946.9chr15+4347801743478431434780174347807743478351434784310.108000.003290.03671includedK562AGGF1
RICCNDBP1ENSG00000166946.9chr15+434780174347843143478017434780774347835143478431-0.227000.000740.05684excludedK562AARS
RICCNDBP1ENSG00000166946.9chr15+4347801743478431434780174347807743478351434784310.107000.009100.07197includedK562AKAP8L
RICCNDBP1ENSG00000166946.9chr15+4347801743478431434780174347807743478351434784310.138000.000220.00355includedK562RBM15
RICCNDBP1ENSG00000166946.9chr15+4347801743478431434780174347807743478351434784310.241000.001540.06190includedHepG2HNRNPC
RICCNDBP1ENSG00000166946.9chr15+4347801743478431434780174347807743478351434784310.332000.000060.00235includedHepG2TIAL1
RICCNDBP1ENSG00000166946.9chr15+4347801743478431434780174347807743478351434784310.120000.005620.05683includedK562UTP18
RICCNDBP1ENSG00000166946.9chr15+4347801743478431434780174347807743478351434784310.078000.000890.00606includedK562AQR
RICCNDBP1ENSG00000166946.9chr15+434862784348665943486278434863354348661243486659-0.762000.000240.00698excludedK562PTBP1
MXECCNDBP1ENSG00000166946.9chr15+43478017434780774347835143478431434776364347780543481396434814780.228000.000290.007061includedK562SRSF1
MXECCNDBP1ENSG00000166946.9chr15+4347801743478077434783514347843143477636434778054348139643481478-0.106000.004770.034492includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCNDBP1 is not avaliable on ENCORE database.