CCDC53

General Information

Gene Name       : CCDC53
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCDC53)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC53 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCDC53 RNA is bound by 8 proteins.  







eCLIP assay for CCDC53 is not avaliable on ENCORE database.





8 proteins are bound to CCDC53 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12102406927102406978-3'-UTR,CDS,intron-Distal4.260994.29034K562U2AF2
chr12102406928102406979-3'-UTR,CDS,intron-Distal4.714576.98523HepG2U2AF2
chr12102406926102406978-3'-UTR,CDS,intron-Distal4.584555.38313K562U2AF1
chr12102419715102419773-3'-UTR,CDS,intron-Distal,intron-Proximal3.241303.27569HepG2BCLAF1
chr12102455684102455774-5'-UTR,CDS,intron-Distal,intron-Proximal3.379275.64139HepG2NCBP2
chr12102444379102444431-CDS,intron-Distal,intron-Proximal4.063194.70109K562U2AF2
chr12102418148102418220-intron-Distal3.271744.23017HepG2HNRNPL
chr12102407272102407402-intron-Distal3.582013.00914HepG2PTBP1
chr12102447099102447194-intron-Distal3.397484.08043K562HNRNPM
chr12102411242102411410-intron-Distal,intron-Proximal3.660884.58716HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCDC53 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC53 is not available on ENCORE database.

  • 64 RBPs can affect the levels of CCDC53.  








The Knockdown/knockout RNA-Seq assay for CCDC53 is not available on ENCORE database.





64 RBPs can affect the gene expression of CCDC53 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC53ENSG00000120860.6452.31680355.998500.345402.338101.77150HepG2ACO1
CCDC53ENSG00000120860.6790.28040594.079100.411602.189201.70990HepG2AKAP1
CCDC53ENSG00000120860.6855.82830491.547500.799908.067206.76630HepG2ASCC1
CCDC53ENSG00000120860.6746.98540511.567200.546106.152405.19250HepG2AUH
CCDC53ENSG00000120860.6133.16600272.85560-1.034903.107102.15170HepG2BCLAF1
CCDC53ENSG00000120860.6246.18820468.53200-0.928408.454707.47760HepG2BOP1
CCDC53ENSG00000120860.6691.91290523.382800.402603.603402.88910HepG2CELF1
CCDC53ENSG00000120860.6456.39850562.76120-0.302202.219501.54430HepG2DAZAP1
CCDC53ENSG00000120860.6557.35260344.273000.694905.930004.97910HepG2DDX21
CCDC53ENSG00000120860.6820.25730569.076200.527403.739003.02250HepG2DDX3X
CCDC53ENSG00000120860.6476.15830308.639100.625404.305103.36330HepG2DDX55
CCDC53ENSG00000120860.6284.49350469.94120-0.724104.964704.18290HepG2EIF2S1
CCDC53ENSG00000120860.6351.61930505.65760-0.524102.430701.78450HepG2EIF4B
CCDC53ENSG00000120860.6679.47650555.201700.291302.043701.30560HepG2EIF4G1
CCDC53ENSG00000120860.6394.92010531.84710-0.429502.568401.78190HepG2EIF4G2
CCDC53ENSG00000120860.6442.40870587.34630-0.408803.302202.65420HepG2ETF1
CCDC53ENSG00000120860.6200.28040347.88640-0.796606.080904.84100HepG2EWSR1
CCDC53ENSG00000120860.6312.93090415.03530-0.407402.298601.57720HepG2FUBP3
CCDC53ENSG00000120860.6386.44470524.00760-0.439302.355701.71500HepG2FXR1
CCDC53ENSG00000120860.6708.12840487.607700.538203.577302.85820HepG2GPKOW
CCDC53ENSG00000120860.6804.59120517.195500.637408.683107.20320HepG2HNRNPA2B1
CCDC53ENSG00000120860.6363.69980485.28980-0.416102.239501.60880HepG2HNRNPC
CCDC53ENSG00000120860.6275.09960492.22980-0.839406.907705.84150HepG2HNRNPK
CCDC53ENSG00000120860.6712.89720512.631300.475705.668204.73430HepG2HNRNPL
CCDC53ENSG00000120860.6618.24160465.332200.409802.365101.77770HepG2HNRNPLL
CCDC53ENSG00000120860.6914.56860482.079900.9237011.2062010.05430HepG2HNRNPU
CCDC53ENSG00000120860.6189.62540305.08370-0.686102.791701.90050HepG2PABPC1
CCDC53ENSG00000120860.6320.54680480.47690-0.583903.640102.81930HepG2PABPC4
CCDC53ENSG00000120860.6600.68720477.151000.332102.285101.50900HepG2PARN
CCDC53ENSG00000120860.6215.15020484.17520-1.1702017.0522015.75100HepG2PCBP1
CCDC53ENSG00000120860.6381.87850565.06390-0.565304.761703.89370HepG2PUM2
CCDC53ENSG00000120860.6238.28630408.53610-0.777803.177902.42620HepG2RAVER1
CCDC53ENSG00000120860.6881.15630548.558200.683708.687007.27890HepG2RBM15
CCDC53ENSG00000120860.6856.74180490.913100.803309.404908.57790HepG2RBM22
CCDC53ENSG00000120860.6371.36200484.25120-0.382902.279501.66220HepG2RBM25
CCDC53ENSG00000120860.6307.11020435.42780-0.503702.880101.86830HepG2RBM27
CCDC53ENSG00000120860.6397.26930510.63080-0.362202.502601.91330HepG2RECQL
CCDC53ENSG00000120860.6273.93710460.59220-0.749605.723004.73780HepG2SF3B1
CCDC53ENSG00000120860.6259.49490512.94080-0.9831012.5372011.42010HepG2SF3B4
CCDC53ENSG00000120860.6683.94840500.617700.450105.054104.22800HepG2SMN1
CCDC53ENSG00000120860.61190.81380512.487801.216306.381505.18400HepG2SNRNP70
CCDC53ENSG00000120860.6799.62240554.468700.528106.554605.87360HepG2SRFBP1
CCDC53ENSG00000120860.6778.81720481.411000.6939010.446709.57430HepG2SSB
CCDC53ENSG00000120860.6348.43340481.19640-0.465703.402502.79090HepG2TAF15
CCDC53ENSG00000120860.6297.02110453.53060-0.610603.972003.12220HepG2TARDBP
CCDC53ENSG00000120860.6339.92670442.18700-0.379402.250201.49470HepG2TIA1
CCDC53ENSG00000120860.6361.92880520.41990-0.524003.747502.71580HepG2TUFM
CCDC53ENSG00000120860.6685.55290408.358900.7473011.063909.83740HepG2UPF1
CCDC53ENSG00000120860.6375.99310295.669300.346602.022201.43440HepG2ZC3H8
CCDC53ENSG00000120860.6676.25540449.114700.590408.009107.20400HepG2ZNF622
CCDC53ENSG00000120860.6300.75500457.09520-0.603904.278403.46190K562AKAP8L
CCDC53ENSG00000120860.6286.06990433.05760-0.598203.715303.05550K562AQR
CCDC53ENSG00000120860.6168.26040261.56860-0.636503.740602.61580K562BCLAF1
CCDC53ENSG00000120860.6811.03550450.673800.8476012.2333010.96900K562DDX47
CCDC53ENSG00000120860.6435.76640325.846000.419302.793702.07170K562EIF2S2
CCDC53ENSG00000120860.6265.07400168.273200.655502.215701.32810K562EIF3A
CCDC53ENSG00000120860.6595.90200395.461000.591404.701603.57450K562FIP1L1
CCDC53ENSG00000120860.6476.27770345.400200.463402.713101.86810K562FMR1
CCDC53ENSG00000120860.6466.00330325.249500.518702.833501.89070K562HNRNPM
CCDC53ENSG00000120860.6516.18930310.988200.730907.638406.16110K562HNRNPU
CCDC53ENSG00000120860.6882.67300536.193200.719007.318006.04100K562HSPD1
CCDC53ENSG00000120860.6418.01870257.246300.700304.336903.29460K562PCBP3
CCDC53ENSG00000120860.6302.51730197.305800.616503.529202.61750K562POLR2G
CCDC53ENSG00000120860.6304.35280453.33880-0.574803.269102.68680K562PUS1
CCDC53ENSG00000120860.6339.17120441.68900-0.381002.253401.70910K562RBM15
CCDC53ENSG00000120860.6200.46590294.54020-0.555103.026902.14260K562RBM22
CCDC53ENSG00000120860.6426.10600183.015001.2192010.836309.18960K562RPS19
CCDC53ENSG00000120860.6286.11660183.708600.639102.816601.47760K562RRP9
CCDC53ENSG00000120860.6166.29480246.34810-0.567003.056902.15740K562SF3B4
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC53 is not available on ENCORE database.





12 RBPs can affect the splicing of CCDC53 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCDC53ENSG00000120860.6chr12-1024442951024444171024398311024398971024550251024551240.067000.000810.02637includedK562AKAP8L
SECCDC53ENSG00000120860.6chr12-1024114971024115831024067191024069701024197511024198160.073000.000080.00145includedK562AQR
SECCDC53ENSG00000120860.6chr12-1024114971024115831024067191024069701024197511024198160.113000.000030.01030includedHepG2UCHL5
SECCDC53ENSG00000120860.6chr12-1024114971024115831024067191024069701024197511024198160.094000.000280.07851includedHepG2BCLAF1
SECCDC53ENSG00000120860.6chr12-1024439661024440691024398311024398971024550251024551240.120000.000020.00055includedK562PUS1
SECCDC53ENSG00000120860.6chr12-1024439661024440691024398311024398971024550251024551240.087000.000290.05530includedK562MTPAP
SECCDC53ENSG00000120860.6chr12-1024439661024440691024398311024398971024550251024551240.061000.000320.02631includedHepG2FTO
SECCDC53ENSG00000120860.6chr12-102455025102455124102439831102439897102455689102455756-0.160000.000140.00384excludedK562U2AF2
SECCDC53ENSG00000120860.6chr12-1024439661024440691024398311024398971024550251024551240.106000.000260.00955includedK562RBM15
SECCDC53ENSG00000120860.6chr12-1024439661024440691024398311024398971024550251024551240.310000.000000.00000includedHepG2HNRNPC
SECCDC53ENSG00000120860.6chr12-1024114971024115831024067191024069701024197511024198160.084000.000520.03824includedHepG2SRSF9
SECCDC53ENSG00000120860.6chr12-1024439661024440691024398311024398971024550251024551240.527000.000000.00000includedK562HNRNPC
MXECCDC53ENSG00000120860.6chr12-102443966102444069102444295102444417102439831102439897102455025102455124-0.471000.001420.068072includedHepG2DDX3X

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCDC53 is not avaliable on ENCORE database.