CBWD2

General Information

Gene Name       : CBWD2
Gene ID             : ENSG00000136682.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CBWD2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CBWD2ENSG00000136682.1439.3134.5836.95ENCSR000AEF
HepG2CBWD2ENSG00000136682.1429.2647.9738.62ENCSR985KAT
K562CBWD2ENSG00000136682.1424.4326.1725.30ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CBWD2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CBWD2 RNA is bound by 8 proteins.  







eCLIP assay for CBWD2 is not avaliable on ENCORE database.





8 proteins are bound to CBWD2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2114218241114218296+5'-UTR,CDS,intron-Proximal3.306515.12722K562BUD13
chr2114219982114220080+5'-UTR,CDS,intron-Proximal3.729629.43524HepG2BCLAF1
chr2114218247114218297+5'-UTR,CDS,intron-Proximal4.105655.79432HepG2BCLAF1
chr2114210748114210777+5'-UTR,CDS,intron-Proximal3.484023.28366HepG2BCLAF1
chr2114212316114212357+5'-UTR,CDS,intron-Proximal4.105655.79432HepG2BCLAF1
chr2114202567114202637+5'-UTR,CDS,intron-Proximal3.068686.70604HepG2BCLAF1
chr2114210715114210748+5'-UTR,CDS,intron-Proximal3.254075.79905HepG2BCLAF1
chr2114202490114202583+5'-UTR,CDS,intron-Proximal4.557609.68645HepG2AQR
chr2114210848114210878+intron-Distal,intron-Proximal4.378394.58968K562PRPF8
chr2114220323114220386+intron-Distal3.083303.10639HepG2PTBP1
chr2114223195114223255+intron-Distal3.685137.55775HepG2U2AF2
chr2114202368114202480+intron-Distal,intron-Proximal3.696293.25538K562KHSRP
chr2114204361114204407+intron-Distal3.019933.38014HepG2HNRNPL
chr2114210832114210848+intron-Proximal4.281204.22101K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CBWD2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CBWD2 is not available on ENCORE database.

  • 55 RBPs can affect the levels of CBWD2.  








The Knockdown/knockout RNA-Seq assay for CBWD2 is not available on ENCORE database.





55 RBPs can affect the gene expression of CBWD2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CBWD2ENSG00000136682.10770.683301031.55280-0.420605.593204.78890HepG2ACO1
CBWD2ENSG00000136682.10723.561301036.40630-0.518407.417806.23060HepG2AKAP8L
CBWD2ENSG00000136682.101269.416101053.684000.268602.093101.41470HepG2CALR
CBWD2ENSG00000136682.10715.63370991.34130-0.470203.861902.56020HepG2CPSF7
CBWD2ENSG00000136682.10934.137601373.38970-0.556008.921807.89180HepG2CELF1
CBWD2ENSG00000136682.10702.13890863.96680-0.299201.941801.36110HepG2DDX21
CBWD2ENSG00000136682.10965.113401210.61780-0.327002.013101.47070HepG2DDX3X
CBWD2ENSG00000136682.10472.49250754.58040-0.675408.773907.57550HepG2DNAJC21
CBWD2ENSG00000136682.10560.39630747.96200-0.416504.760203.94250HepG2DNAJC2
CBWD2ENSG00000136682.10707.806401104.75410-0.642305.307304.42150HepG2EIF4A3
CBWD2ENSG00000136682.10929.28250553.757200.746806.427005.25720HepG2FUBP3
CBWD2ENSG00000136682.10784.16380984.84270-0.328703.422002.34290HepG2HDGF
CBWD2ENSG00000136682.10395.32420847.38760-1.1000015.6249014.10810HepG2HNRNPC
CBWD2ENSG00000136682.10987.355101345.16120-0.446107.741806.66350HepG2HNRNPL
CBWD2ENSG00000136682.10735.72880942.97380-0.358004.335803.06950HepG2KIF1C
CBWD2ENSG00000136682.10814.392801115.20880-0.453503.373402.64870HepG2MAGOH
CBWD2ENSG00000136682.10823.517701147.81670-0.479003.613602.89380HepG2NCBP2
CBWD2ENSG00000136682.10532.98570808.20830-0.600602.633401.56850HepG2NONO
CBWD2ENSG00000136682.101782.393301094.910200.702909.465508.14020HepG2NSUN2
CBWD2ENSG00000136682.101230.96710757.576800.7002013.4493011.93920HepG2PRPF4
CBWD2ENSG00000136682.101139.292101397.81070-0.295002.250801.70470HepG2PUF60
CBWD2ENSG00000136682.101132.115301483.84520-0.390306.680005.84240HepG2PUM1
CBWD2ENSG00000136682.10865.103001482.75670-0.7773013.9005012.46860HepG2PUM2
CBWD2ENSG00000136682.101322.703601025.328700.367303.569002.87240HepG2QKI
CBWD2ENSG00000136682.10914.39610671.670900.445002.841902.04590HepG2RRP9
CBWD2ENSG00000136682.101147.57370985.686600.219301.797801.30380HepG2SF3B4
CBWD2ENSG00000136682.101031.499501906.48800-0.886202.865901.52900HepG2SNRNP200
CBWD2ENSG00000136682.101844.419701363.298200.436007.885807.15980HepG2SRFBP1
CBWD2ENSG00000136682.101363.717101028.905300.406305.137104.54420HepG2SRSF1
CBWD2ENSG00000136682.101053.961801380.14330-0.389005.257404.43730HepG2SRSF5
CBWD2ENSG00000136682.101127.918901569.59560-0.476708.712807.71270HepG2SUCLG1
CBWD2ENSG00000136682.10643.86180820.81560-0.350302.342301.47160HepG2SUPT6H
CBWD2ENSG00000136682.101435.30200924.992000.633709.381608.44740HepG2TAF15
CBWD2ENSG00000136682.10964.047801365.61390-0.502405.684304.37540HepG2TUFM
CBWD2ENSG00000136682.101519.655101039.680300.547505.832504.93690HepG2U2AF1
CBWD2ENSG00000136682.101094.987401445.48870-0.400602.693301.86770HepG2UBE2L3
CBWD2ENSG00000136682.10756.13410517.601900.546704.278003.33350HepG2UCHL5
CBWD2ENSG00000136682.10961.92710747.650100.363504.195303.39490HepG2ZC3H8
CBWD2ENSG00000136682.10992.327801324.62070-0.416707.106106.33470HepG2ZNF622
CBWD2ENSG00000136682.10727.91210985.77080-0.437503.265702.31620K562BOP1
CBWD2ENSG00000136682.10795.926401048.15230-0.397103.454102.57480K562CPSF6
CBWD2ENSG00000136682.101835.345501467.392300.322704.467603.66640K562DDX47
CBWD2ENSG00000136682.101301.621801084.991900.262502.447401.63020K562DKC1
CBWD2ENSG00000136682.10804.74450984.41170-0.290702.247001.58870K562EIF2S2
CBWD2ENSG00000136682.10524.84420684.12940-0.382402.622801.82430K562EIF4A3
CBWD2ENSG00000136682.10828.604301066.47950-0.364102.625601.79340K562FMR1
CBWD2ENSG00000136682.10780.391101000.72370-0.358802.674201.89220K562GPKOW
CBWD2ENSG00000136682.10381.56880587.03160-0.621505.116604.32720K562HNRNPC
CBWD2ENSG00000136682.101199.71660845.856100.504106.266604.91080K562HNRNPU
CBWD2ENSG00000136682.101387.372601070.048900.374603.384602.46080K562KIF1C
CBWD2ENSG00000136682.10784.32290976.81960-0.316602.113301.34690K562METAP2
CBWD2ENSG00000136682.101289.60220840.219800.618004.698103.45150K562NAA15
CBWD2ENSG00000136682.10464.26990658.42070-0.504003.176301.76480K562NONO
CBWD2ENSG00000136682.101931.064601605.192000.266602.032101.33240K562PUF60
CBWD2ENSG00000136682.102059.370001707.220200.270502.748801.68680K562PUM1
CBWD2ENSG00000136682.101435.43500999.946000.521504.443803.77840K562PUS1
CBWD2ENSG00000136682.101085.46260791.800200.455005.005003.83780K562SF3B4
CBWD2ENSG00000136682.10460.26000630.04610-0.453002.474301.51870K562SUPV3L1
CBWD2ENSG00000136682.10788.54170624.129300.337202.554901.76820K562SYNCRIP
CBWD2ENSG00000136682.10606.93540868.96600-0.517802.010201.40100K562TARDBP
CBWD2ENSG00000136682.101263.45970738.113800.775408.294606.23910K562U2AF1
CBWD2ENSG00000136682.101154.71250762.316800.599008.042906.66230K562U2AF2
CBWD2ENSG00000136682.10694.926501108.89170-0.674206.010504.99840K562UPF1
CBWD2ENSG00000136682.101234.752101525.31400-0.304902.343401.56010K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CBWD2 is not available on ENCORE database.





14 RBPs can affect the splicing of CBWD2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECBWD2ENSG00000136682.10chr2+1141965961141966941141953391141955991141989271141990140.200000.000000.00005includedHepG2HNRNPK
SECBWD2ENSG00000136682.10chr2+1142146411142147861142123171142123551142182491142182960.134000.000970.07424includedHepG2QKI
SECBWD2ENSG00000136682.10chr2+114222705114222750114219984114220071114224059114224143-0.093000.002640.02760excludedK562AQR
SECBWD2ENSG00000136682.10chr2+114196596114196694114195339114195599114198927114199014-0.142000.001520.02406excludedK562PUS1
SECBWD2ENSG00000136682.10chr2+1141965961141966941141953391141955991141989271141990140.125000.000000.00016includedHepG2SFPQ
SECBWD2ENSG00000136682.10chr2+114196596114196694114195339114195599114198927114199014-0.132000.000060.00204excludedK562U2AF1
SECBWD2ENSG00000136682.10chr2+1141965961141966941141953391141955991141989271141990140.136000.000070.00829includedHepG2HNRNPL
SECBWD2ENSG00000136682.10chr2+114196596114196694114195339114195599114198927114199014-0.065000.000820.02616excludedHepG2SF3A3
SECBWD2ENSG00000136682.10chr2+1141965961141966941141953391141955991141989271141990140.194000.000120.02583includedK562UPF1
SECBWD2ENSG00000136682.10chr2+114196596114196694114195339114195599114198927114199014-0.134000.000050.00154excludedK562U2AF2
SECBWD2ENSG00000136682.10chr2+114214641114214786114212317114212355114218249114218296-0.101000.003460.05409excludedK562U2AF2
SECBWD2ENSG00000136682.10chr2+114196596114196694114195339114195599114198927114199014-0.129000.000400.01861excludedK562HNRNPU
SECBWD2ENSG00000136682.10chr2+114196596114196694114195339114195599114198927114199014-0.144000.002450.05362excludedK562RBM15
SECBWD2ENSG00000136682.10chr2+1142146411142147861142123171142123551142182491142182960.141000.002630.05763includedK562AGGF1
SECBWD2ENSG00000136682.10chr2+1141965961141966941141953391141955991141989271141990140.247000.000250.01592includedK562HNRNPK
SECBWD2ENSG00000136682.10chr2+114196596114196694114195339114195599114198927114199014-0.098000.000140.00907excludedHepG2HNRNPU
MXECBWD2ENSG00000136682.10chr2+114222705114222750114228609114228666114219984114220071114239753114239805-0.168000.001090.025272includedHepG2SRSF1
MXECBWD2ENSG00000136682.10chr2+114222624114222750114224059114224143114219984114220071114228609114228666-0.196000.000120.001442includedK562AQR
MXECBWD2ENSG00000136682.10chr2+114222705114222750114224059114224143114219984114220071114228609114228666-0.053000.000540.005332includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CBWD2 is not avaliable on ENCORE database.