BRPF1

General Information

Gene Name       : BRPF1
Gene ID             : ENSG00000156983.15
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: BRPF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878BRPF1ENSG00000156983.154.059.266.65ENCSR000AEF
HepG2BRPF1ENSG00000156983.1511.567.369.46ENCSR985KAT
K562BRPF1ENSG00000156983.1522.0117.9319.97ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for BRPF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • BRPF1 RNA is bound by 11 proteins.  







eCLIP assay for BRPF1 is not avaliable on ENCORE database.





11 proteins are bound to BRPF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr397894829789507+3'-UTR7.1785732.01595K562PUM2
chr397893949789482+3'-UTR6.3642723.23848K562PUM2
chr397895079789558+3'-UTR6.9915646.01709K562PUM2
chr397738039773948+5'-UTR,intron-Distal,intron-Proximal4.233476.81564HepG2PRPF8
chr397738219773835+5'-UTR,intron-Proximal4.784594.09264K562AQR
chr397760729776093+CDS4.585606.26288K562YBX3
chr397858489785923+CDS,intron-Distal,intron-Proximal5.075184.90235K562SF3B4
chr397758249775900+CDS3.742467.35414K562ZNF622
chr397811379781185+CDS4.240403.81597K562RBM15
chr397847789784833+CDS4.755566.29310K562ZNF622
chr397763839776461+CDS,intron-Proximal4.752464.02817HepG2PRPF8
chr397761829776224+CDS4.292393.77023K562ZNF622
chr397807299780871+CDS3.805477.28917K562GRWD1
chr397868239786874+CDS,intron-Proximal4.091953.12843K562PRPF8
chr397813079781346+CDS3.912383.15006K562RBM15
chr397808079780850+CDS3.485904.20387K562ZNF622
chr397868379786862+CDS,intron-Proximal3.721834.49024K562AQR
chr397760939776127+CDS4.617666.44474K562YBX3
chr397763249776377+CDS3.280145.58962K562RBM15
chr397809859781079+CDS3.763966.85118K562FMR1
chr397815089781580+CDS3.750035.57819K562UCHL5
chr397764159776461+CDS,intron-Proximal3.119474.07440K562PRPF8
chr397809929781067+CDS4.888977.12197K562FXR2
chr397738349773924+intron-Distal,intron-Proximal3.928164.93376K562PRPF8
chr397861929786243+intron-Distal,intron-Proximal5.455118.83608K562AQR
chr397738359773864+intron-Proximal3.531115.34337K562AQR
chr397868629786881+intron-Proximal4.743364.65563K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for BRPF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for BRPF1 is not available on ENCORE database.

  • 69 RBPs can affect the levels of BRPF1.  








The Knockdown/knockout RNA-Seq assay for BRPF1 is not available on ENCORE database.





69 RBPs can affect the gene expression of BRPF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
BRPF1ENSG00000156983.11489.10660352.619000.471904.031003.28190HepG2CELF1
BRPF1ENSG00000156983.11519.14040374.215400.472203.212301.94630HepG2EIF2S2
BRPF1ENSG00000156983.11509.73430304.763300.742004.474103.66360HepG2EIF4A3
BRPF1ENSG00000156983.11478.35330296.847000.688303.622602.84110HepG2EIF4B
BRPF1ENSG00000156983.11882.97060573.803900.621708.365907.41780HepG2ETF1
BRPF1ENSG00000156983.11522.57960307.679200.764105.823304.84370HepG2FXR1
BRPF1ENSG00000156983.11366.63960229.271900.677204.193003.07780HepG2GEMIN5
BRPF1ENSG00000156983.11445.61000655.40020-0.556603.547002.83080HepG2GPKOW
BRPF1ENSG00000156983.11330.01820228.290400.531602.827302.17450HepG2HNRNPA1
BRPF1ENSG00000156983.11348.50320253.930500.456602.162101.54040HepG2HNRNPC
BRPF1ENSG00000156983.11422.77860345.287700.292001.884201.31360HepG2HNRNPL
BRPF1ENSG00000156983.11432.28120625.45600-0.532903.510902.81130HepG2HNRNPLL
BRPF1ENSG00000156983.11519.25690343.681400.595304.657403.45710HepG2HNRNPM
BRPF1ENSG00000156983.11431.00860289.986600.571603.311502.57850HepG2IGF2BP2
BRPF1ENSG00000156983.11481.08140307.787500.644204.167703.36520HepG2MAGOH
BRPF1ENSG00000156983.11463.69760309.479900.583203.136902.46860HepG2MATR3
BRPF1ENSG00000156983.11414.83660637.77420-0.620503.250002.19350HepG2MTPAP
BRPF1ENSG00000156983.11455.63350316.745300.524502.820102.18070HepG2NCBP2
BRPF1ENSG00000156983.11515.67000375.896200.456003.703002.81900HepG2NOL12
BRPF1ENSG00000156983.11412.05540310.696000.407202.538701.95070HepG2PCBP1
BRPF1ENSG00000156983.11309.76230224.988400.461202.651101.92830HepG2PPIL4
BRPF1ENSG00000156983.11573.63860380.955700.590407.610906.72860HepG2PUM1
BRPF1ENSG00000156983.11578.41630380.662400.603504.474903.63320HepG2PUM2
BRPF1ENSG00000156983.11411.24150247.527200.732303.183202.43040HepG2RAVER1
BRPF1ENSG00000156983.11453.47810309.574500.550602.222401.34230HepG2RBM27
BRPF1ENSG00000156983.11362.36670250.618300.531902.964202.33170HepG2RPS19
BRPF1ENSG00000156983.11318.88140224.641500.505303.293102.60090HepG2SAFB2
BRPF1ENSG00000156983.111057.52190545.600700.954708.858007.59850HepG2SF3A3
BRPF1ENSG00000156983.11377.16140261.970300.525704.173303.41190HepG2SMN1
BRPF1ENSG00000156983.11357.78540252.949500.500102.278501.41900HepG2SMNDC1
BRPF1ENSG00000156983.11678.73490541.714500.325202.744702.24410HepG2SRFBP1
BRPF1ENSG00000156983.11484.47900343.560000.495803.578503.05760HepG2SRSF1
BRPF1ENSG00000156983.11566.96710354.337800.678008.220907.21630HepG2SRSF5
BRPF1ENSG00000156983.11583.60510402.954800.534302.534301.93440HepG2SUCLG1
BRPF1ENSG00000156983.11401.82800245.110900.713005.909605.23030HepG2TIAL1
BRPF1ENSG00000156983.11469.37310350.617500.420702.733501.86550HepG2TUFM
BRPF1ENSG00000156983.11755.02080426.113300.825207.974506.90980HepG2U2AF1
BRPF1ENSG00000156983.11541.68170371.149100.545302.032201.32060HepG2UBE2L3
BRPF1ENSG00000156983.11706.79120467.152500.597307.308806.41170HepG2UTP3
BRPF1ENSG00000156983.11305.90770406.24050-0.409202.782902.10870HepG2ZC3H8
BRPF1ENSG00000156983.111554.069201333.206000.221102.207401.69100K562AGGF1
BRPF1ENSG00000156983.112811.068301302.502301.1097025.0593023.48230K562AQR
BRPF1ENSG00000156983.112527.687501687.629600.5827013.9788012.62580K562DDX47
BRPF1ENSG00000156983.111079.04470788.792700.451903.945802.32150K562DNAJC21
BRPF1ENSG00000156983.111127.18600823.089800.453503.460502.43450K562EFTUD2
BRPF1ENSG00000156983.11888.75840715.866100.312002.936801.68370K562EIF2S1
BRPF1ENSG00000156983.111434.94590746.125400.943407.777906.05580K562EIF3A
BRPF1ENSG00000156983.111201.04090881.036400.446902.856201.80540K562EIF3D
BRPF1ENSG00000156983.11850.51010425.500500.9991017.8180015.72500K562EIF3G
BRPF1ENSG00000156983.111345.17500680.881900.9822017.1458014.95190K562EIF4A3
BRPF1ENSG00000156983.11859.79900613.178600.487605.519803.80100K562EIF4B
BRPF1ENSG00000156983.112503.564301847.321000.438408.035206.45330K562EIF4G2
BRPF1ENSG00000156983.11821.85340594.345500.467504.321802.65670K562EWSR1
BRPF1ENSG00000156983.111335.06060708.089900.9148020.8702019.31980K562FXR1
BRPF1ENSG00000156983.11166.45160369.24830-1.149504.777503.78920K562G3BP2
BRPF1ENSG00000156983.111221.83850908.146300.428004.048703.34360K562HNRNPC
BRPF1ENSG00000156983.111207.825301803.59000-0.578506.721205.49120K562HSPD1
BRPF1ENSG00000156983.11829.08780572.996000.532902.893901.83830K562IGF2BP2
BRPF1ENSG00000156983.111035.92540601.658900.783809.643108.01530K562MAGOH
BRPF1ENSG00000156983.11795.56250600.356600.406102.312001.47500K562MATR3
BRPF1ENSG00000156983.111157.687901510.08580-0.383403.193402.30200K562PPIG
BRPF1ENSG00000156983.111294.14790800.967300.692107.447406.21850K562PRPF8
BRPF1ENSG00000156983.11990.83590584.589500.761108.952307.80140K562PTBP1
BRPF1ENSG00000156983.112488.190502015.610000.303802.875402.04340K562PUF60
BRPF1ENSG00000156983.111648.037101375.767900.260401.840901.37970K562PUS1
BRPF1ENSG00000156983.11986.64540560.258000.816305.991104.69370K562RBM22
BRPF1ENSG00000156983.111023.84320758.072100.433502.984501.94140K562RPS3
BRPF1ENSG00000156983.111567.756901141.706600.457404.940803.49290K562SAFB
BRPF1ENSG00000156983.111861.190701583.126700.233302.201201.46680K562SF3A3
BRPF1ENSG00000156983.11552.74040383.527700.527202.806301.94490K562SF3B4
BRPF1ENSG00000156983.111847.568601114.444200.729203.348501.94620K562SNRNP200
BRPF1ENSG00000156983.11905.11170704.292700.361802.487101.52640K562SRFBP1
BRPF1ENSG00000156983.111020.87450573.152900.8327010.525009.16060K562SRSF1
BRPF1ENSG00000156983.111027.70210731.740100.489904.589303.17270K562SRSF4
BRPF1ENSG00000156983.11793.65690541.449000.551603.149302.01610K562SRSF5
BRPF1ENSG00000156983.111599.131001285.198300.315202.986402.12930K562SYNCRIP
BRPF1ENSG00000156983.111086.91230579.938200.9062012.0223010.36500K562TARDBP
BRPF1ENSG00000156983.11820.47590559.450000.552402.890502.05190K562TIA1
BRPF1ENSG00000156983.11850.73680549.294500.631004.324402.90800K562TRA2A
BRPF1ENSG00000156983.111824.856901513.772700.269503.016402.13350K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for BRPF1 is not available on ENCORE database.





13 RBPs can affect the splicing of BRPF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEBRPF1ENSG00000156983.11chr3+978403597842259783708978383797846279784937-0.189000.000010.00053excludedK562SRSF1
SEBRPF1ENSG00000156983.11chr3+978403597842259783708978383797846279784937-0.212000.000000.00546excludedK562TIA1
SEBRPF1ENSG00000156983.11chr3+978403597842259783691978383797846279784937-0.082000.000370.08404excludedK562PUM1
SEBRPF1ENSG00000156983.11chr3+9784035978422597837089783837978462797849370.249000.001600.03950includedHepG2HNRNPK
SEBRPF1ENSG00000156983.11chr3+9784035978422597837089783855978462797849370.286000.000600.09264includedK562GPKOW
SEBRPF1ENSG00000156983.11chr3+978403597842259783708978383797846279784937-0.092000.000070.01883excludedK562EIF4G2
SEBRPF1ENSG00000156983.11chr3+978403597842259783708978383797846279784937-0.127000.000030.00088excludedK562HNRNPC
A3SSBRPF1ENSG00000156983.11chr3+9788817978891397888499788913978790297881380.065000.001120.00770longerK562AQR
A3SSBRPF1ENSG00000156983.11chr3+9783691978385597837089783855978299197831230.090000.005000.02889longerK562AQR
A5SSBRPF1ENSG00000156983.11chr3+9786727978690197867279786839978725697876140.176000.000000.00000longerK562AQR
A5SSBRPF1ENSG00000156983.11chr3+978369197838559783691978383797846279784937-0.479000.000000.00006shorterHepG2U2AF2
A5SSBRPF1ENSG00000156983.11chr3+9783691978385597836919783837978462797849370.316000.000030.03229longerK562XRCC6
A5SSBRPF1ENSG00000156983.11chr3+978369197838559783691978383797846279784937-0.164000.000140.07095shorterK562GPKOW
RIBRPF1ENSG00000156983.11chr3+9787256978761497872569787393978749597876140.230000.000140.00573includedK562HNRNPC
RIBRPF1ENSG00000156983.11chr3+978725697876149787256978739397874959787614-0.368000.000000.00000excludedK562HNRNPUL1
RIBRPF1ENSG00000156983.11chr3+9787256978761497872569787393978749597876140.189000.000550.04245includedK562PHF6
RIBRPF1ENSG00000156983.11chr3+9787256978761497872569787393978749597876140.267000.001840.02538includedHepG2PCBP1
RIBRPF1ENSG00000156983.11chr3+9787256978761497872569787393978749597876140.212000.000090.01429includedK562XRCC6

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for BRPF1 is not avaliable on ENCORE database.