ATXN7L3B

General Information

Gene Name       : ATXN7L3B
Gene ID             : ENSG00000253719.3
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ATXN7L3B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ATXN7L3BENSG00000253719.315.1015.2715.18ENCSR000AEF
HepG2ATXN7L3BENSG00000253719.316.3622.4119.38ENCSR985KAT
K562ATXN7L3BENSG00000253719.322.1121.3621.73ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ATXN7L3B is not avaliable on ENCORE database.



Proteins bound to RNA
  • ATXN7L3B RNA is bound by 16 proteins.  







eCLIP assay for ATXN7L3B is not avaliable on ENCORE database.





16 proteins are bound to ATXN7L3B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr127493496674935028+3'-UTR3.6325711.22683K562DDX55
chr127493517474935206+3'-UTR4.3455213.15612K562PUM2
chr127493492174935022+3'-UTR4.1394618.81113K562UPF1
chr127493234374932431+3'-UTR3.547889.92560HepG2UPF1
chr127493438974934453+3'-UTR4.033905.19413HepG2LIN28B
chr127493485574934895+3'-UTR3.723604.03249HepG2FUBP3
chr127493445374934501+3'-UTR3.8093012.20306HepG2LIN28B
chr127493489474934969+3'-UTR4.3900010.93554K562DDX6
chr127493448874934505+3'-UTR5.5260810.55688K562LIN28B
chr127493469174934716+3'-UTR3.8964719.67502K562FAM120A
chr127493464974934726+3'-UTR3.3301813.37914K562UPF1
chr127493514174935174+3'-UTR4.0195511.60690K562PUM2
chr127493309174933163+3'-UTR3.273803.34573K562IGF2BP2
chr127493495174935030+3'-UTR3.162486.70516HepG2FUBP3
chr127493491074934966+3'-UTR3.7263211.34330K562DDX55
chr127493439574934444+3'-UTR3.552514.99353K562LIN28B
chr127493503474935090+3'-UTR4.2081213.47326K562PABPC4
chr127493368574933741+3'-UTR3.364023.27329HepG2IGF2BP3
chr127493498074935041+3'-UTR3.5625318.70903K562FAM120A
chr127493496974935043+3'-UTR4.6299912.87072K562DDX6
chr127493429274934338+3'-UTR3.545375.05294K562UPF1
chr127493450174934554+3'-UTR3.062454.38324HepG2LIN28B
chr127493497774935027+3'-UTR4.059489.59880HepG2DDX55
chr127493496974935036+3'-UTR4.689925.43716K562APOBEC3C
chr127493444474934476+3'-UTR4.3787313.88083K562LIN28B
chr127493450574934555+3'-UTR5.017366.54425K562LIN28B
chr127493490674934968+3'-UTR3.253403.50415K562APOBEC3C
chr127493497274935027+3'-UTR3.3810610.89155K562PABPC4
chr127493471674934765+3'-UTR3.2898913.96293K562FAM120A
chr127493404974934179+3'-UTR3.8831027.30281K562FAM120A
chr127493438474934476+3'-UTR3.2120417.02382K562FAM120A
chr127493273874932796+3'-UTR3.349044.94406K562YBX3
chr127493284374932921+3'-UTR4.7670313.62352K562LIN28B
chr127493491174934960+3'-UTR3.4790211.10267K562PABPC4
chr127493488574934977+3'-UTR3.702357.78021HepG2DDX55
chr127493489974934970+3'-UTR3.987779.28825K562TARDBP
chr127493465974934691+3'-UTR4.1801822.53518K562FAM120A
chr127493447674934488+3'-UTR5.9050914.79464K562LIN28B
chr127493333874933390+3'-UTR4.327374.73785K562TIA1
chr127493184874931877+5'-UTR3.987405.07098K562DDX3X
chr127493162774931703+5'-UTR3.7709214.55365K562DDX3X
chr127493161474931696+5'-UTR3.805544.00968HepG2DDX3X
chr127493170374931796+5'-UTR3.7494012.20332K562DDX3X
chr127493212274932174+CDS3.300913.20659K562SND1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ATXN7L3B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ATXN7L3B is not available on ENCORE database.

  • 64 RBPs can affect the levels of ATXN7L3B.  








The Knockdown/knockout RNA-Seq assay for ATXN7L3B is not available on ENCORE database.





64 RBPs can affect the gene expression of ATXN7L3B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ATXN7L3BENSG00000253719.22328.709101620.119700.523305.702404.33880HepG2ADAR
ATXN7L3BENSG00000253719.22263.143601918.040700.238602.849002.07190HepG2AKAP8L
ATXN7L3BENSG00000253719.23498.903102384.422200.553206.201205.04650HepG2ASCC1
ATXN7L3BENSG00000253719.21742.696701171.062500.573406.914606.01660HepG2BOP1
ATXN7L3BENSG00000253719.22484.959401908.644000.380608.209007.18130HepG2CKAP4
ATXN7L3BENSG00000253719.22809.954301655.023100.763605.934304.81170HepG2CNOT7
ATXN7L3BENSG00000253719.21436.571901075.102300.418103.631402.85400HepG2CPSF6
ATXN7L3BENSG00000253719.21673.658201128.449900.568606.641505.08350HepG2CSTF2
ATXN7L3BENSG00000253719.23101.844302594.088600.257804.613503.69380HepG2DAZAP1
ATXN7L3BENSG00000253719.22250.372401765.639600.349906.560805.36060HepG2DDX19B
ATXN7L3BENSG00000253719.22486.045501766.764000.492606.945305.50800HepG2DDX24
ATXN7L3BENSG00000253719.23571.141102760.562800.371303.015202.36590HepG2DDX3X
ATXN7L3BENSG00000253719.22141.573201826.502500.229502.600201.94160HepG2DKC1
ATXN7L3BENSG00000253719.21398.991701631.39480-0.221702.005101.39630HepG2DNAJC21
ATXN7L3BENSG00000253719.21374.298101616.95990-0.234603.004002.32940HepG2DNAJC2
ATXN7L3BENSG00000253719.2846.919001186.69230-0.486703.987002.91210HepG2EIF3D
ATXN7L3BENSG00000253719.23497.495402519.418700.473104.017703.25140HepG2EIF4A3
ATXN7L3BENSG00000253719.21271.961802451.59200-0.9467017.5566015.65160HepG2EIF4G2
ATXN7L3BENSG00000253719.22200.274201711.964800.361903.025401.88740HepG2ESF1
ATXN7L3BENSG00000253719.23817.981503336.824200.194202.567901.98510HepG2ETF1
ATXN7L3BENSG00000253719.22399.185801865.498100.362903.848402.86330HepG2EWSR1
ATXN7L3BENSG00000253719.21813.134301249.995300.536506.889605.68470HepG2FUBP3
ATXN7L3BENSG00000253719.22895.460302357.930200.296201.942601.38090HepG2G3BP1
ATXN7L3BENSG00000253719.21384.702501056.587200.390102.943802.01770HepG2GEMIN5
ATXN7L3BENSG00000253719.21949.505801218.720800.677607.276006.26840HepG2GPKOW
ATXN7L3BENSG00000253719.22347.385201647.023700.511106.421905.49680HepG2HNRNPA1
ATXN7L3BENSG00000253719.21723.763201376.817400.324102.836901.87420HepG2HNRNPM
ATXN7L3BENSG00000253719.23146.039202396.848000.392303.464002.71650HepG2IGF2BP2
ATXN7L3BENSG00000253719.22327.126801848.740500.331902.990801.72790HepG2LIN28B
ATXN7L3BENSG00000253719.23160.972602542.534400.314002.283601.68570HepG2MAGOH
ATXN7L3BENSG00000253719.21983.552801614.986400.296502.506701.73500HepG2MSI2
ATXN7L3BENSG00000253719.23207.360802617.092100.293301.976801.43660HepG2NCBP2
ATXN7L3BENSG00000253719.2935.846201801.38990-0.9448028.4585026.29990HepG2PARN
ATXN7L3BENSG00000253719.21990.280602322.28590-0.222602.642302.04610HepG2PCBP1
ATXN7L3BENSG00000253719.2948.808501658.66560-0.8058020.6553018.88780HepG2PRPF4
ATXN7L3BENSG00000253719.22445.447201944.563300.330605.824804.99050HepG2PUS1
ATXN7L3BENSG00000253719.21284.816501948.45060-0.600803.310102.54210HepG2RAVER1
ATXN7L3BENSG00000253719.24151.255902788.981400.5737014.1507013.16250HepG2RBM22
ATXN7L3BENSG00000253719.22885.876202322.639200.313103.148902.43430HepG2RBM25
ATXN7L3BENSG00000253719.21019.517101723.90700-0.757808.410006.57220HepG2RCC2
ATXN7L3BENSG00000253719.22922.453102449.311200.254703.524302.83880HepG2RECQL
ATXN7L3BENSG00000253719.22415.518801957.937200.302902.401801.65190HepG2RPS2
ATXN7L3BENSG00000253719.21161.289801620.69670-0.480909.323708.24990HepG2SAFB2
ATXN7L3BENSG00000253719.21639.852001151.191600.510305.461504.49590HepG2SF3B1
ATXN7L3BENSG00000253719.21679.392401890.01580-0.170502.007401.44550HepG2SMN1
ATXN7L3BENSG00000253719.21244.451301986.85580-0.675005.652704.24930HepG2SMNDC1
ATXN7L3BENSG00000253719.23728.712803150.076300.243204.077503.50350HepG2SRFBP1
ATXN7L3BENSG00000253719.23230.925502567.917400.331205.958605.33010HepG2SRSF1
ATXN7L3BENSG00000253719.21646.823601238.672100.410802.601901.63420HepG2SRSF3
ATXN7L3BENSG00000253719.21927.646202424.44400-0.330805.149704.33680HepG2SRSF5
ATXN7L3BENSG00000253719.21785.512702089.13900-0.226602.794002.24040HepG2SRSF9
ATXN7L3BENSG00000253719.23588.441202735.054700.391708.689207.88080HepG2SSB
ATXN7L3BENSG00000253719.21433.868002308.14890-0.6868015.7377014.56240HepG2TAF15
ATXN7L3BENSG00000253719.22774.727701691.783500.713703.455002.26760HepG2TBRG4
ATXN7L3BENSG00000253719.2977.693201784.16710-0.8678025.9522024.44350HepG2TRIM56
ATXN7L3BENSG00000253719.22347.414901992.921300.236102.714301.67450HepG2UTP18
ATXN7L3BENSG00000253719.22625.191302132.429600.299805.892805.17260HepG2ZNF622
ATXN7L3BENSG00000253719.26653.966204028.928400.7237013.2359012.08800K562AQR
ATXN7L3BENSG00000253719.22217.158102622.58420-0.242303.373002.30820K562BCLAF1
ATXN7L3BENSG00000253719.22132.992402644.67570-0.310202.639901.39250K562CIRBP
ATXN7L3BENSG00000253719.21583.508502479.91860-0.647206.197604.56280K562EIF3D
ATXN7L3BENSG00000253719.22940.677702053.853300.5177010.795009.68490K562FXR1
ATXN7L3BENSG00000253719.21715.743602292.77180-0.418304.346003.68800K562PUS1
ATXN7L3BENSG00000253719.21922.861102233.72550-0.216202.096201.56690K562RBM15
ATXN7L3BENSG00000253719.2913.258501424.84850-0.641709.426307.57850K562RCC2
ATXN7L3BENSG00000253719.21635.454301230.979900.409803.182402.09840K562RPS3
ATXN7L3BENSG00000253719.22521.573502091.224700.269902.670001.86620K562SYNCRIP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ATXN7L3B is not available on ENCORE database.






No RBPs affect the alternative splcing events of ATXN7L3B on ENCORE database.





The Knockdown/knockout RNA-Seq assay for ATXN7L3B is not avaliable on ENCORE database.