ZNF3

General Information

Gene Name       : ZNF3
Gene ID             : ENSG00000166526.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF3ENSG00000166526.1630.6525.4528.05ENCSR000AEF
HepG2ZNF3ENSG00000166526.1627.8639.6933.77ENCSR985KAT
K562ZNF3ENSG00000166526.1642.3939.2640.83ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF3 RNA is bound by 18 proteins.  







eCLIP assay for ZNF3 is not avaliable on ENCORE database.





18 proteins are bound to ZNF3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr79966861499668649-3'-UTR,intron-Distal4.081123.34184HepG2GRWD1
chr79966828799668402-3'-UTR,intron-Distal3.640446.84281K562UPF1
chr79966814999668253-3'-UTR,intron-Distal3.499417.93427K562UPF1
chr79966815799668189-3'-UTR,intron-Distal3.971833.01428K562UCHL5
chr79966806599668143-3'-UTR,intron-Distal3.778207.71860K562UPF1
chr79966819399668248-3'-UTR,intron-Distal3.542835.53175K562FAM120A
chr79966815399668237-3'-UTR,intron-Distal3.671205.36498HepG2UPF1
chr79966855699668653-3'-UTR,intron-Distal3.254305.86900HepG2HLTF
chr79966799299668078-3'-UTR,intron-Distal3.497624.09267K562FAM120A
chr79966783499667992-3'-UTR,intron-Distal3.506247.69244K562FAM120A
chr79966804199668153-3'-UTR,intron-Distal4.671205.35992HepG2UPF1
chr79966870499668740-3'-UTR,intron-Distal3.967593.05875K562RBM15
chr79966841499668518-3'-UTR,intron-Distal4.276494.49605HepG2UPF1
chr79967925699679276-5'-UTR,intron-Distal3.621874.85956HepG2NCBP2
chr79967927699679345-5'-UTR,intron-Distal,intron-Proximal4.7420018.05507HepG2NCBP2
chr79966879199668849-CDS,intron-Distal3.546535.10069HepG2GRWD1
chr79967316599673187-CDS,intron-Distal3.187517.39618HepG2PRPF8
chr79966925799669316-CDS,intron-Distal3.454414.41784HepG2GRWD1
chr79967275599672868-CDS,intron-Distal,intron-Proximal3.423449.66295HepG2GRWD1
chr79966956299669646-CDS,intron-Distal,intron-Proximal3.682886.77066K562UCHL5
chr79966977399669821-CDS,intron-Distal,intron-Proximal4.202103.87582K562ZNF622
chr79966937399669484-CDS,intron-Distal,intron-Proximal3.627857.89260HepG2BCLAF1
chr79966879999668890-CDS,intron-Distal3.163176.58484K562RBM15
chr79967285799672929-CDS,intron-Distal,intron-Proximal3.827587.14119HepG2AQR
chr79966951699669571-CDS,intron-Distal,intron-Proximal4.255844.22893K562RBM15
chr79967287999672948-CDS,intron-Distal,intron-Proximal3.482588.96794HepG2SF3A3
chr79967311799673166-CDS,intron-Distal,intron-Proximal5.9807510.48996K562AQR
chr79966926999669324-CDS,intron-Distal3.170814.30396K562UCHL5
chr79966966099669743-CDS,intron-Distal,intron-Proximal3.579386.43326K562UCHL5
chr79966943099669480-CDS,intron-Distal,intron-Proximal3.661853.01531K562YBX3
chr79966907699669128-CDS,intron-Distal3.152283.85127HepG2GRWD1
chr79966967099669740-CDS,intron-Distal,intron-Proximal4.345133.81597K562RBM15
chr79967285299672908-CDS,intron-Distal,intron-Proximal4.429356.39176K562AQR
chr79966892199668972-CDS,intron-Distal3.241304.74886HepG2BCLAF1
chr79966958599669639-CDS,intron-Distal,intron-Proximal3.378833.34231K562RBM15
chr79967706899677144-intron-Distal,intron-Proximal4.360024.74172HepG2TIAL1
chr79967294899673026-intron-Distal,intron-Proximal5.1158429.43817HepG2PCBP2
chr79966679999666885-intron-Distal4.018373.58660HepG2ILF3
chr79966751099667594-intron-Distal,intron-Proximal3.093375.95812HepG2CSTF2
chr79967022599670296-intron-Distal3.941716.14899HepG2PCBP2
chr79967017599670225-intron-Distal4.364124.57427HepG2PCBP2
chr79967312599673165-intron-Distal,intron-Proximal4.231079.70941HepG2PRPF8
chr79967916699679210-intron-Distal3.067454.39210HepG2XRN2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF3 is not available on ENCORE database.

  • 56 RBPs can affect the levels of ZNF3.  








The Knockdown/knockout RNA-Seq assay for ZNF3 is not available on ENCORE database.





56 RBPs can affect the gene expression of ZNF3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF3ENSG00000166526.12764.837501001.01420-0.388204.794904.03550HepG2ACO1
ZNF3ENSG00000166526.121103.82930867.758700.347102.375001.44840HepG2ADAR
ZNF3ENSG00000166526.12577.765901197.76080-1.0518012.4064011.36130HepG2AKAP1
ZNF3ENSG00000166526.121002.030801392.81350-0.475107.298906.27060HepG2AUH
ZNF3ENSG00000166526.12980.501101334.08730-0.444302.709901.74700HepG2CCAR1
ZNF3ENSG00000166526.121183.780301000.866300.242102.547901.90480HepG2CKAP4
ZNF3ENSG00000166526.121243.233701424.39900-0.196302.084701.42820HepG2DAZAP1
ZNF3ENSG00000166526.12754.92630975.54490-0.369902.819602.13700HepG2DDX21
ZNF3ENSG00000166526.12747.671201147.37040-0.617905.580004.72000HepG2DDX3X
ZNF3ENSG00000166526.12712.92890985.60050-0.467203.028602.38530HepG2DDX6
ZNF3ENSG00000166526.12600.63610873.78210-0.540806.551805.50380HepG2DNAJC21
ZNF3ENSG00000166526.12701.06390947.49600-0.434602.915802.30730HepG2EIF2S1
ZNF3ENSG00000166526.121911.703201599.144500.257502.958002.33970HepG2ETF1
ZNF3ENSG00000166526.121183.08770882.153400.423403.613602.88850HepG2HNRNPA1
ZNF3ENSG00000166526.12685.32860981.23930-0.517804.667703.78240HepG2HNRNPC
ZNF3ENSG00000166526.12798.39640974.75140-0.287902.782702.17320HepG2HNRNPU
ZNF3ENSG00000166526.12757.47020599.111200.338302.026401.38140HepG2NSUN2
ZNF3ENSG00000166526.12862.173901348.27480-0.645108.478107.51150HepG2PUF60
ZNF3ENSG00000166526.121153.436901430.20240-0.310302.867102.18510HepG2PUM2
ZNF3ENSG00000166526.12829.94280635.020900.386102.512401.75970HepG2RRP9
ZNF3ENSG00000166526.121725.615301289.664900.420002.406101.77820HepG2SF3A3
ZNF3ENSG00000166526.121374.396101126.606700.286702.948602.34230HepG2SF3B4
ZNF3ENSG00000166526.12793.701001065.80590-0.425302.361901.48320HepG2SMNDC1
ZNF3ENSG00000166526.121330.376901513.96470-0.186501.892301.36020HepG2SUCLG1
ZNF3ENSG00000166526.12786.06970947.12780-0.268901.954001.51850HepG2TIAL1
ZNF3ENSG00000166526.12715.32770955.62170-0.417804.919804.21140HepG2TRIM56
ZNF3ENSG00000166526.12862.245301143.73470-0.407604.643403.77690HepG2UPF1
ZNF3ENSG00000166526.121014.73410815.114400.315902.296701.63050HepG2XRN2
ZNF3ENSG00000166526.12954.489501257.89050-0.398206.343805.60440HepG2ZNF622
ZNF3ENSG00000166526.12752.199001134.84400-0.593307.976507.08270K562AGGF1
ZNF3ENSG00000166526.12473.20590682.61790-0.528603.641401.88870K562AKAP1
ZNF3ENSG00000166526.12847.368501180.82500-0.478702.582801.95060K562AKAP8L
ZNF3ENSG00000166526.124755.102101705.456301.4792030.0784028.34610K562AQR
ZNF3ENSG00000166526.122013.359601737.260000.212702.273401.67410K562DDX47
ZNF3ENSG00000166526.121313.120001051.323100.320702.302701.46910K562EFTUD2
ZNF3ENSG00000166526.121619.303101125.801400.524304.420103.07450K562EIF3D
ZNF3ENSG00000166526.121242.66140984.929900.335203.455602.57170K562EIF3G
ZNF3ENSG00000166526.121600.18050722.464501.1471021.8756019.33580K562EIF4A3
ZNF3ENSG00000166526.121343.81630751.323700.8387017.4331016.02770K562FXR1
ZNF3ENSG00000166526.12639.21510975.96100-0.610502.555301.39710K562HNRNPA2B1
ZNF3ENSG00000166526.12991.000801253.26150-0.338702.936602.08350K562KIF1C
ZNF3ENSG00000166526.121504.926101045.451600.525506.429805.12210K562MAGOH
ZNF3ENSG00000166526.121570.899001296.924800.276403.328902.44540K562MTPAP
ZNF3ENSG00000166526.12507.59400853.77500-0.750203.435402.29730K562PABPN1
ZNF3ENSG00000166526.121246.15130930.124900.421903.791302.64640K562PCBP2
ZNF3ENSG00000166526.121299.105701023.054500.344502.554401.83370K562PRPF8
ZNF3ENSG00000166526.12696.095001171.28120-0.750708.158407.27470K562PUS1
ZNF3ENSG00000166526.12787.480701141.04910-0.535006.742705.84340K562RBM15
ZNF3ENSG00000166526.121199.83980973.778600.301102.109201.37990K562RBM22
ZNF3ENSG00000166526.122025.467801421.883700.510408.825807.42660K562SF3A3
ZNF3ENSG00000166526.121426.88820803.749400.8280015.8952013.70880K562SF3B4
ZNF3ENSG00000166526.121688.124201456.746500.212602.365101.49050K562SRPK2
ZNF3ENSG00000166526.121124.754801403.27590-0.319203.667002.31020K562SRSF7
ZNF3ENSG00000166526.121381.189501055.393800.388004.084103.08210K562SYNCRIP
ZNF3ENSG00000166526.121351.08520749.288300.850409.961707.69220K562U2AF1
ZNF3ENSG00000166526.121449.89080773.789800.9058018.5239016.38600K562U2AF2
ZNF3ENSG00000166526.12735.358001048.47300-0.511804.129102.86140K562UCHL5
ZNF3ENSG00000166526.121675.584601359.543000.301404.222403.19150K562WDR43
ZNF3ENSG00000166526.121837.384101069.084700.781204.565702.40110K562XRCC6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF3 is not available on ENCORE database.





20 RBPs can affect the splicing of ZNF3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZNF3ENSG00000166526.12chr7-9967716299677279996749259967505699679257996793710.162000.004550.07033includedK562SRSF1
SEZNF3ENSG00000166526.12chr7-996749259967505699672852996732539967715899677279-0.286000.000140.00415excludedK562SRSF1
SEZNF3ENSG00000166526.12chr7-996771589967719599674925996750569967925799679332-0.407000.007260.09827excludedK562SF3B4
SEZNF3ENSG00000166526.12chr7-996771589967727999674925996750569967925799679326-0.164000.002220.06721excludedK562PRPF8
SEZNF3ENSG00000166526.12chr7-996771589967727999673164996732539967925799679326-0.196000.001960.03587excludedHepG2U2AF1
SEZNF3ENSG00000166526.12chr7-996771589967727999674925996750569967925799679326-0.430000.000000.00000excludedHepG2U2AF2
SEZNF3ENSG00000166526.12chr7-996771589967727999674925996750569967925799679326-0.134000.000200.00308excludedK562AQR
SEZNF3ENSG00000166526.12chr7-9967492599675056996728529967325399679257996793620.396000.000020.00646includedHepG2HNRNPA1
SEZNF3ENSG00000166526.12chr7-996749259967505699672852996732539967715899677279-0.310000.005780.09035excludedK562U2AF1
SEZNF3ENSG00000166526.12chr7-996771589967727999673164996732539967925799679326-0.271000.000670.07823excludedK562RBM22
SEZNF3ENSG00000166526.12chr7-996771589967727999673164996732539967925799679326-0.291000.005570.07896excludedK562U2AF2
SEZNF3ENSG00000166526.12chr7-996771589967727999673164996732539967925799679326-0.268000.000820.03213excludedK562TARDBP
SEZNF3ENSG00000166526.12chr7-996771589967727999674925996750569967925799679326-0.239000.001620.05421excludedK562HNRNPU
SEZNF3ENSG00000166526.12chr7-996771589967727999674925996750569967925799679326-0.206000.000950.02654excludedK562AGGF1
SEZNF3ENSG00000166526.12chr7-996771589967727999674925996750569967925799679326-0.234000.000080.00570excludedHepG2HNRNPU
SEZNF3ENSG00000166526.12chr7-9967715899677195996749259967505699679257996793320.361000.000340.07016includedHepG2XRCC6
SEZNF3ENSG00000166526.12chr7-9967492599675056996728529967325399679257996793620.316000.003020.08949includedHepG2HNRNPC
A3SSZNF3ENSG00000166526.12chr7-996697029966983599669702996698229967275799672899-0.214000.000000.00013shorterK562SF3B4
A3SSZNF3ENSG00000166526.12chr7-9967715899677328996771589967727999679257996793260.074000.008970.04817longerK562AQR
A3SSZNF3ENSG00000166526.12chr7-9967275799672951996727579967288499673164996732530.204000.000000.00000longerK562AQR
A3SSZNF3ENSG00000166526.12chr7-9967492599675124996749259967505699677158996773280.182000.000000.00002longerK562AQR
A5SSZNF3ENSG00000166526.12chr7-996771589967727999677162996772799967492599675056-0.222000.000250.03719shorterK562SUPV3L1
RIZNF3ENSG00000166526.12chr7-9967275799673253996727579967288499673164996732530.129000.005150.06423includedK562SF3B4
RIZNF3ENSG00000166526.12chr7-9967275799673253996727579967288499673164996732530.102000.001240.02690includedHepG2IGF2BP3
RIZNF3ENSG00000166526.12chr7-9967275799673253996727579967288499673164996732530.081000.007700.09110includedHepG2G3BP1
RIZNF3ENSG00000166526.12chr7-9967275799673253996727579967288499673164996732530.123000.000230.00764includedHepG2KHSRP
RIZNF3ENSG00000166526.12chr7-9967275799673253996727579967288499673164996732530.083000.005390.05389includedHepG2NCBP2
RIZNF3ENSG00000166526.12chr7-9967275799673253996727579967288499673164996732530.088000.008920.05645includedHepG2SF3B4
RIZNF3ENSG00000166526.12chr7-9967275799673253996727579967288499673164996732530.078000.008330.07377includedHepG2HNRNPK
RIZNF3ENSG00000166526.12chr7-9967275799673253996727579967288499673164996732530.212000.000550.04328includedK562SAFB
RIZNF3ENSG00000166526.12chr7-9967275799673253996727579967288499673164996732530.212000.000000.00000includedK562AQR
MXEZNF3ENSG00000166526.12chr7-99674925996751039967715899677328996731649967325399679257996793260.155000.001630.013901includedK562AQR
MXEZNF3ENSG00000166526.12chr7-99674925996751249967715899677328996731649967325399679257996793260.159000.001410.012321includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF3 is not avaliable on ENCORE database.