WDR20

General Information

Gene Name       : WDR20
Gene ID             : ENSG00000140153.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: WDR20)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878WDR20ENSG00000140153.1712.0512.7212.39ENCSR000AEF
HepG2WDR20ENSG00000140153.1712.9714.5013.73ENCSR985KAT
K562WDR20ENSG00000140153.177.387.077.22ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for WDR20 is not avaliable on ENCORE database.



Proteins bound to RNA
  • WDR20 RNA is bound by 20 proteins.  







eCLIP assay for WDR20 is not avaliable on ENCORE database.





20 proteins are bound to WDR20 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr14102676257102676324+3'-UTR,intron-Distal,intron-Proximal4.096414.00100K562TIA1
chr14102676258102676310+3'-UTR,intron-Distal,intron-Proximal4.013693.44480HepG2TIA1
chr14102661259102661315+3'-UTR,CDS,intron-Distal,intron-Proximal3.674114.36528HepG2U2AF2
chr14102680916102681010+3'-UTR,intron-Distal3.191833.90146K562KHSRP
chr14102606253102606294+5'-UTR,CDS,intron-Distal4.454834.15208K562RBM15
chr14102628909102628989+intron-Distal5.7340010.46904K562PTBP1
chr14102606698102606793+intron-Distal3.435966.80626HepG2FAM120A
chr14102630719102630787+intron-Distal3.216573.12625HepG2QKI
chr14102630641102630702+intron-Distal3.201153.10883HepG2SUGP2
chr14102615030102615091+intron-Distal3.372848.42739HepG2ILF3
chr14102606720102606798+intron-Distal3.968515.61307K562GTF2F1
chr14102606569102606621+intron-Distal,intron-Proximal4.096944.13073HepG2GTF2F1
chr14102652589102652667+intron-Distal4.694926.44072HepG2HNRNPM
chr14102684280102684349+intron-Distal4.093613.62366HepG2HNRNPM
chr14102606886102606944+intron-Distal4.020663.01994HepG2GTF2F1
chr14102606532102606615+intron-Distal,intron-Proximal3.244485.12571HepG2CSTF2T
chr14102633179102633257+intron-Distal3.245363.26015K562PTBP1
chr14102633030102633132+intron-Distal4.173604.63077K562RBFOX2
chr14102633187102633263+intron-Distal4.323604.49973K562MATR3
chr14102606720102606790+intron-Distal4.508474.41396HepG2FASTKD2
chr14102628932102628989+intron-Distal5.237016.76922HepG2PTBP1
chr14102633103102633179+intron-Distal4.950824.40618K562PTBP1
chr14102606700102606794+intron-Distal3.216237.64256HepG2CSTF2T
chr14102654013102654096+intron-Distal4.413193.06537K562RBFOX2
chr14102632339102632386+intron-Distal3.633814.60009HepG2SUGP2
chr14102628370102628424+intron-Distal3.996283.30440HepG2QKI
chr14102684502102684594+intron-Distal3.785723.06347K562NONO
chr14102606655102606790+intron-Distal4.6181825.46965HepG2PRPF4
chr14102606730102606820+intron-Distal3.617235.75122K562DROSHA
chr14102606684102606789+intron-Distal4.6676212.58213HepG2GTF2F1
chr14102684139102684172+intron-Distal3.834683.07980HepG2HNRNPM
chr14102631420102631529+intron-Distal4.463186.34372HepG2HNRNPC
chr14102683913102684007+intron-Distal4.678575.94008HepG2HNRNPM
chr14102668410102668572+intron-Distal5.0004219.92749HepG2PCBP2
chr14102633112102633180+intron-Distal4.851334.07628HepG2PTBP1
chr14102628330102628370+intron-Distal4.439563.16986HepG2QKI
chr14102631466102631501+intron-Distal4.174444.05620HepG2MATR3
chr14102633103102633143+intron-Distal3.767793.29248HepG2SUGP2
chr14102632744102632842+intron-Distal4.086204.37030K562KHSRP
chr14102630834102630924+intron-Distal4.123318.18586HepG2SUGP2
chr14102606850102606968+intron-Distal3.107653.58549K562NONO
chr14102617259102617315+intron-Distal4.040373.16986HepG2QKI
chr14102654007102654110+intron-Distal3.934475.55843HepG2RBFOX2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for WDR20 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for WDR20 is not available on ENCORE database.

  • 63 RBPs can affect the levels of WDR20.  








The Knockdown/knockout RNA-Seq assay for WDR20 is not available on ENCORE database.





63 RBPs can affect the gene expression of WDR20 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
WDR20ENSG00000140153.13622.06820414.226400.586603.932402.82310HepG2ABCF1
WDR20ENSG00000140153.13447.84010289.917100.627204.718503.74490HepG2CALR
WDR20ENSG00000140153.13543.38980287.013300.920808.414607.12240HepG2CIRBP
WDR20ENSG00000140153.13479.84820358.647800.419903.121302.44630HepG2CELF1
WDR20ENSG00000140153.13439.06500259.843600.756705.949504.99750HepG2DDX21
WDR20ENSG00000140153.13535.16350349.754800.613504.045103.30020HepG2DDX3X
WDR20ENSG00000140153.13426.12260259.495900.715504.456803.31400HepG2EEF2
WDR20ENSG00000140153.13383.00460288.827500.407101.798801.30870HepG2EIF2S1
WDR20ENSG00000140153.13311.11020210.632500.562602.685201.79420HepG2EIF3D
WDR20ENSG00000140153.13658.67140319.201701.0450010.400409.18120HepG2EIF4A3
WDR20ENSG00000140153.13494.41330358.899300.462002.911801.79130HepG2ESF1
WDR20ENSG00000140153.13752.40600580.096000.375103.148502.51400HepG2ETF1
WDR20ENSG00000140153.13434.26120317.125800.453402.333301.51930HepG2G3BP2
WDR20ENSG00000140153.13266.52170187.535100.507002.109201.33160HepG2GEMIN5
WDR20ENSG00000140153.13672.15990389.959600.785406.652205.68800HepG2GPKOW
WDR20ENSG00000140153.13402.65530290.317900.471802.528201.90770HepG2HNRNPA1
WDR20ENSG00000140153.13486.52220354.401300.457003.542802.50380HepG2HNRNPA2B1
WDR20ENSG00000140153.13527.70220322.929400.708405.608004.64810HepG2HNRNPC
WDR20ENSG00000140153.13647.54440372.142400.799007.344006.37600HepG2HNRNPLL
WDR20ENSG00000140153.13619.55130505.485900.293502.121401.48120HepG2IGF2BP1
WDR20ENSG00000140153.13487.56040303.673000.683004.803103.93520HepG2IGF2BP2
WDR20ENSG00000140153.13690.58160497.653900.472602.508701.71960HepG2LARP4
WDR20ENSG00000140153.13642.77340322.132900.9966010.096908.86760HepG2MAGOH
WDR20ENSG00000140153.13445.57420323.942400.459802.161401.60020HepG2MATR3
WDR20ENSG00000140153.13467.21800338.644600.464203.052502.20300HepG2MSI2
WDR20ENSG00000140153.13623.16300379.460700.715604.150402.95080HepG2MTPAP
WDR20ENSG00000140153.13510.62760331.578400.622803.968003.21430HepG2NCBP2
WDR20ENSG00000140153.13414.22860295.316800.488102.558701.86100HepG2PABPC4
WDR20ENSG00000140153.13439.13760339.176500.372502.447301.71490HepG2PRPF4
WDR20ENSG00000140153.13456.88810303.709200.589105.152104.45390HepG2PTBP1
WDR20ENSG00000140153.13590.90470365.017700.694906.516105.65330HepG2PUF60
WDR20ENSG00000140153.13470.48800387.488300.279901.840501.33550HepG2PUM1
WDR20ENSG00000140153.13523.46410387.201600.434903.042202.33790HepG2PUM2
WDR20ENSG00000140153.13649.69940332.090600.9681016.5778015.29510HepG2PUS1
WDR20ENSG00000140153.13486.69650328.930200.565104.303603.54970HepG2QKI
WDR20ENSG00000140153.13620.11320484.847400.354902.553702.05080HepG2RBM22
WDR20ENSG00000140153.13408.67660298.523100.453002.595601.93960HepG2RBM25
WDR20ENSG00000140153.13427.30060338.001300.338101.820201.36150HepG2NELFE
WDR20ENSG00000140153.13445.50050314.798300.500903.662602.96660HepG2RECQL
WDR20ENSG00000140153.13847.40760552.830700.616106.563505.57490HepG2RPLP0
WDR20ENSG00000140153.13364.80370204.975400.831606.294105.40790HepG2RPS19
WDR20ENSG00000140153.13441.80360287.146300.621503.856802.91710HepG2RPS2
WDR20ENSG00000140153.13810.39410495.549900.709504.915204.00010HepG2SF3A3
WDR20ENSG00000140153.13401.08590316.205200.343001.802901.30850HepG2SF3B4
WDR20ENSG00000140153.13702.23710330.047801.0892018.2729017.28250HepG2SRSF1
WDR20ENSG00000140153.13378.31130268.509800.494503.583402.97330HepG2SRSF9
WDR20ENSG00000140153.13741.76360475.436200.641608.648107.84080HepG2SSB
WDR20ENSG00000140153.13569.80910409.878100.475204.496903.73920HepG2SUCLG1
WDR20ENSG00000140153.13531.78760362.631200.552203.496302.69230HepG2TARDBP
WDR20ENSG00000140153.13456.81770311.695000.551404.229003.63890HepG2TIAL1
WDR20ENSG00000140153.13462.98970356.616400.376502.153201.38940HepG2TUFM
WDR20ENSG00000140153.13604.28260357.882700.755606.478705.53450HepG2U2AF1
WDR20ENSG00000140153.13636.56270483.341100.397203.920503.30020HepG2ZNF622
WDR20ENSG00000140153.13515.38920389.679900.403303.047702.45580K562AGGF1
WDR20ENSG00000140153.13616.37640405.483400.604105.276004.35990K562AKAP8L
WDR20ENSG00000140153.131156.12870460.025901.3294023.9745022.43490K562AQR
WDR20ENSG00000140153.13535.19820425.457100.331002.268101.44890K562ATP5C1
WDR20ENSG00000140153.13601.62800317.819600.920604.243002.63110K562HNRNPA2B1
WDR20ENSG00000140153.13633.66920430.305700.558304.623503.51100K562KIF1C
WDR20ENSG00000140153.13761.33040402.100600.9209010.714609.69360K562PUS1
WDR20ENSG00000140153.13633.38570391.809400.692807.826806.86000K562RBM15
WDR20ENSG00000140153.13501.58100254.138300.980803.829902.34830K562SF1
WDR20ENSG00000140153.13472.90190368.315600.360502.329901.57590K562SF3A3
WDR20ENSG00000140153.13530.02780309.765400.774802.876401.53660K562SFPQ
WDR20ENSG00000140153.13523.43470291.923500.842303.273801.89410K562SNRNP200
WDR20ENSG00000140153.13471.33580352.169100.420403.190702.28730K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for WDR20 is not available on ENCORE database.





1 RBPs can affect the splicing of WDR20 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEWDR20ENSG00000140153.13chr14+102659799102659851102606229102606509102661274102661457-0.095000.001250.01710excludedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for WDR20 is not avaliable on ENCORE database.