TSSC2

General Information

Gene Name       : TSSC2
Gene ID             : ENSG00000223756.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TSSC2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TSSC2ENSG00000223756.60.000.010.01ENCSR000AEF
HepG2TSSC2ENSG00000223756.60.000.000.00ENCSR985KAT
K562TSSC2ENSG00000223756.632.0226.4429.23ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TSSC2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TSSC2 RNA is bound by 15 proteins.  







eCLIP assay for TSSC2 is not avaliable on ENCORE database.





15 proteins are bound to TSSC2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1134151863415267+intron-Distal4.7161324.71444K562SLTM
chr1134125403412581+intron-Distal4.447667.91573K562SLTM
chr1134129523413012+intron-Distal3.104973.97386K562SAFB
chr1134108433410900+intron-Distal3.683675.34807K562ILF3
chr1134155183415552+intron-Distal3.939273.28264K562YWHAG
chr1134067453406822+intron-Distal3.8609410.31518K562HNRNPL
chr1134107443410794+intron-Distal4.4533411.42557K562ILF3
chr1134059663406034+intron-Distal,intron-Proximal3.084135.43953K562KHSRP
chr1134098733409922+intron-Distal4.290089.46262K562ILF3
chr1134118423411877+intron-Distal4.236864.07991K562ILF3
chr1134127583412794+intron-Distal3.021837.15650K562SAFB2
chr1134175623417622+intron-Distal3.840543.99545K562HNRNPC
chr1134092433409312+intron-Distal3.3198510.27775K562NONO
chr1134059263406005+intron-Distal4.645094.39969K562TARDBP
chr1134145593414573+intron-Distal3.8385110.74151K562SAFB2
chr1134159833416052+intron-Distal3.698747.99896K562SAFB2
chr1134117113411761+intron-Distal3.609625.34807K562ILF3
chr1134125353412598+intron-Distal4.329009.36080K562SAFB2
chr1134127933412889+intron-Distal4.1244737.94554K562SLTM
chr1134130683413118+intron-Distal3.779245.49916K562SAFB2
chr1134121553412209+intron-Distal3.184628.10854K562SLTM
chr1134123533412429+intron-Distal5.6141615.32788K562SAFB2
chr1134206813420744+intron-Distal3.541154.19798K562SLTM
chr1134104883410518+intron-Distal3.397834.34776K562ILF3
chr1134150963415186+intron-Distal3.5529417.16775K562SLTM
chr1134127853412874+intron-Distal3.444407.96881K562SAFB
chr1134123833412419+intron-Distal3.513063.69481K562UCHL5
chr1134095623409606+intron-Distal3.453346.10043K562ILF3
chr1134116173411756+intron-Distal4.9066616.10355K562NONO
chr1134106123410645+intron-Distal3.722066.11440K562ILF3
chr1134099993410054+intron-Distal3.8816210.57270K562ILF3
chr1134057633405847+intron-Distal3.049065.67819K562KHSRP
chr1134123323412404+intron-Distal3.381768.10854K562SLTM
chr1134198043419864+intron-Distal3.204943.99763K562SLTM
chr1134065303406615+intron-Distal3.511128.38126K562PTBP1
chr1134124043412426+intron-Distal3.324674.70352K562SLTM
chr1134094843409555+intron-Distal3.444199.00721K562NONO
chr1134060343406102+intron-Distal,intron-Proximal4.4568316.58398K562KHSRP
chr1134109283410940+intron-Distal4.175744.33299K562ILF3
chr1134127943412880+intron-Distal3.5457423.05429K562SAFB2
chr1134096203409659+intron-Distal3.109105.15666K562NONO
chr1134149293414960+intron-Distal4.319245.37891K562SAFB2
chr1134102513410295+intron-Distal4.914768.15853K562ILF3
chr1134151973415251+intron-Distal3.042553.37949K562SAFB
chr1134124703412523+intron-Distal5.3052410.22279K562SAFB2
chr1134151853415265+intron-Distal3.3068118.73537K562SAFB2
chr1134151763415273+intron-Distal3.571316.97539K562YWHAG
chr1134113463411383+intron-Distal4.157063.82910K562NONO
chr1134152653415341+intron-Distal4.6821613.70267K562SAFB2
chr1134068223406904+intron-Distal4.8378213.22770K562HNRNPL
chr1134131363413225+intron-Distal3.256255.77595K562SAFB
chr1134120203412085+intron-Distal4.602158.58017K562SLTM
chr1134155233415563+intron-Distal3.263735.53952K562SAFB2
chr1134127523412793+intron-Distal3.323116.17034K562SLTM
chr1134152793415370+intron-Distal3.718983.91283K562YWHAG
chr1134061713406297+intron-Distal,intron-Proximal4.0431014.39377K562KHSRP
chr1134062973406395+intron-Distal,intron-Proximal3.258287.23491K562KHSRP
chr1134128143412863+intron-Distal3.725084.49347K562UCHL5
chr1134116383411662+intron-Distal4.234613.81649K562ILF3
chr1134092013409232+intron-Distal3.529463.61506K562NONO
chr1134080583408100+intron-Distal4.070803.04254K562UCHL5
chr1134123053412353+intron-Distal4.2714510.00729K562SAFB2
chr1134114333411489+intron-Distal3.669167.07736K562ILF3
chr1134087803408839+intron-Distal4.337369.60483K562NONO
chr1134059773406082+intron-Distal,intron-Proximal4.342053.25521K562LIN28B
chr1134046893404744+intron-Proximal3.496855.76403K562UCHL5
chr1134055143405518+intron-Proximal3.721833.08090K562AQR
chr1134055183405593+intron-Proximal3.653076.51619K562AQR
chr1134046813404734+intron-Proximal3.120444.05798K562U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TSSC2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TSSC2 is not available on ENCORE database.

  • 39 RBPs can affect the levels of TSSC2.  








The Knockdown/knockout RNA-Seq assay for TSSC2 is not available on ENCORE database.





39 RBPs can affect the gene expression of TSSC2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TSSC2ENSG00000223756.2702.65030925.27420-0.397103.776002.18940K562BCCIP
TSSC2ENSG00000223756.21283.57300894.037700.521706.747905.21930K562BCLAF1
TSSC2ENSG00000223756.2766.64310552.591800.472203.608602.36950K562CCAR1
TSSC2ENSG00000223756.21800.096101260.154700.514402.602201.57870K562CNOT7
TSSC2ENSG00000223756.2945.51860682.751200.469604.456703.46250K562CPSF6
TSSC2ENSG00000223756.22241.525701829.407100.293002.706801.74320K562CELF1
TSSC2ENSG00000223756.21558.314201306.077200.254602.495601.34910K562DDX21
TSSC2ENSG00000223756.2988.197401184.30300-0.261202.421501.80650K562DDX47
TSSC2ENSG00000223756.2882.55680618.663800.512404.177902.48560K562DHX30
TSSC2ENSG00000223756.2691.47930977.48630-0.499406.224805.20990K562EIF2S2
TSSC2ENSG00000223756.21345.96470987.491100.446704.908303.17370K562EXOSC5
TSSC2ENSG00000223756.21112.14770873.995600.347603.390902.12860K562GLRX3
TSSC2ENSG00000223756.21542.705401015.279600.603508.540906.75030K562HNRNPA1
TSSC2ENSG00000223756.21028.99510761.082700.435002.527901.95390K562HNRNPC
TSSC2ENSG00000223756.2835.635701070.22310-0.357002.942401.84940K562HNRNPL
TSSC2ENSG00000223756.2730.499101189.71630-0.703706.087304.91830K562HSPD1
TSSC2ENSG00000223756.2788.28080557.866700.498703.435801.78130K562KHDRBS1
TSSC2ENSG00000223756.2840.35650556.676200.594103.904302.78050K562KRR1
TSSC2ENSG00000223756.2959.940101387.99580-0.532005.421304.06120K562MBNL1
TSSC2ENSG00000223756.2878.40070636.265700.465103.994002.92980K562METAP2
TSSC2ENSG00000223756.21279.61050918.889500.477607.360406.09690K562MTPAP
TSSC2ENSG00000223756.2560.61960748.84480-0.417603.536902.13360K562NCBP2
TSSC2ENSG00000223756.21718.390101020.985100.7510024.0629022.19140K562NSUN2
TSSC2ENSG00000223756.2417.18110786.42490-0.9146010.398508.93770K562PRPF8
TSSC2ENSG00000223756.21293.859301623.19560-0.327202.497101.72290K562PUF60
TSSC2ENSG00000223756.2705.16790519.408500.441002.873201.51310K562RBM25
TSSC2ENSG00000223756.2929.97910623.103200.577604.076802.86970K562RCC2
TSSC2ENSG00000223756.2481.27510691.22980-0.522303.986802.64030K562NELFE
TSSC2ENSG00000223756.2504.00410800.96470-0.668305.557904.39870K562RPS19
TSSC2ENSG00000223756.2571.67800772.12740-0.433602.775101.77060K562RPS3
TSSC2ENSG00000223756.21623.390301007.427300.6882010.131308.64290K562SF3A3
TSSC2ENSG00000223756.2867.67940608.556600.511703.989902.45210K562SLBP
TSSC2ENSG00000223756.2817.834101032.12890-0.335703.889302.79780K562SRPK2
TSSC2ENSG00000223756.2355.56620671.45090-0.9172011.6438010.20170K562SRSF1
TSSC2ENSG00000223756.21441.331601165.548100.306303.251201.97460K562SRSF7
TSSC2ENSG00000223756.2790.52680966.37270-0.289802.190001.45850K562SYNCRIP
TSSC2ENSG00000223756.2701.96940548.070800.356902.733101.93330K562U2AF2
TSSC2ENSG00000223756.21610.411201082.570900.5729011.5120010.17100K562UPF1
TSSC2ENSG00000223756.21519.35120926.323800.7138011.232309.41290K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TSSC2 is not available on ENCORE database.





18 RBPs can affect the splicing of TSSC2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETSSC2ENSG00000223756.2chr11+342772834279453426083342619334288513428927-0.252000.003210.05332excludedK562SRSF1
SETSSC2ENSG00000223756.2chr11+342772834279453426062342619334288513428927-0.161000.001810.06202excludedK562FXR1
SETSSC2ENSG00000223756.2chr11+340612834061983405396340551434183463419320-0.178000.001450.09594excludedK562SUPV3L1
SETSSC2ENSG00000223756.2chr11+340612834061983405396340551434229883423097-0.295000.000080.00205excludedK562PUS1
SETSSC2ENSG00000223756.2chr11+342885134289273426062342619334299153430040-0.376000.000180.01762excludedK562HNRNPL
SETSSC2ENSG00000223756.2chr11+342772834279273426083342619334288513428927-0.223000.004580.06494excludedK562HNRNPC
SETSSC2ENSG00000223756.2chr11+340612834061983405396340551434183463418636-0.315000.000950.01854excludedK562HNRNPC
A3SSTSSC2ENSG00000223756.2chr11+3426062342619334260833426193342482234248820.091000.000700.03667longerK562PUS1
RITSSC2ENSG00000223756.2chr11+342772834289273427728342794534288513428927-0.197000.000310.03598excludedK562XRN2
RITSSC2ENSG00000223756.2chr11+342772834289273427728342792734288513428927-0.183000.001770.02070excludedK562RBM15
RITSSC2ENSG00000223756.2chr11+342772834289273427728342794534288513428927-0.211000.001440.02465excludedK562FXR1
MXETSSC2ENSG00000223756.2chr11+34061283406198341834634186363405396340551434229883423097-0.144000.004890.099472includedK562RBM15
MXETSSC2ENSG00000223756.2chr11+342606234261483427728342794534248223424882342885134289270.165000.006060.079611includedK562PUS1
MXETSSC2ENSG00000223756.2chr11+342606234261933428851342892734248223424882342991534300400.444000.000590.012821includedK562SRSF1
MXETSSC2ENSG00000223756.2chr11+342482234248823427728342792734241443424186342885134289270.434000.000040.001351includedK562SRSF1
MXETSSC2ENSG00000223756.2chr11+34277283427945342885134289273426083342619334299153430191-0.168000.008640.056232includedK562AQR
MXETSSC2ENSG00000223756.2chr11+342772834279453428851342892734248223424882342991534301910.192000.005550.059511includedK562U2AF2
MXETSSC2ENSG00000223756.2chr11+34061283406198341834634186363405396340551434229883423097-0.228000.000820.023072includedK562TARDBP
MXETSSC2ENSG00000223756.2chr11+34061283406198341834634186363405396340551434229883423097-0.347000.000000.000022includedK562TRA2A
MXETSSC2ENSG00000223756.2chr11+342606234261933428851342892734248223424882342991534300400.200000.004030.075391includedK562SBDS
MXETSSC2ENSG00000223756.2chr11+342608334261933427728342792734248223424882342885134289270.131000.007870.099141includedK562HNRNPC
MXETSSC2ENSG00000223756.2chr11+34061283406198341834634186363405396340551434229883423097-0.187000.000430.082022includedK562EXOSC5
MXETSSC2ENSG00000223756.2chr11+342606234261933427728342792734248223424882342885134289270.602000.000730.089761includedK562HNRNPM
MXETSSC2ENSG00000223756.2chr11+34061283406198341834634186363405396340551434229883423097-0.219000.000550.031612includedK562TIA1
MXETSSC2ENSG00000223756.2chr11+34061283406198341834634186363405396340551434229883423097-0.297000.000000.000192includedK562IGF2BP2
MXETSSC2ENSG00000223756.2chr11+34061283406198341834634186363405396340551434229883423097-0.157000.001670.060162includedK562AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TSSC2 is not avaliable on ENCORE database.