TRIM13

General Information

Gene Name       : TRIM13
Gene ID             : ENSG00000204977.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRIM13)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRIM13ENSG00000204977.915.3016.8516.08ENCSR000AEF
HepG2TRIM13ENSG00000204977.910.1420.9615.55ENCSR985KAT
K562TRIM13ENSG00000204977.913.9212.3413.13ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRIM13 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRIM13 RNA is bound by 15 proteins.  







eCLIP assay for TRIM13 is not avaliable on ENCORE database.





15 proteins are bound to TRIM13 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr135058606650586107+3'-UTR,CDS,intron-Distal,intron-Proximal3.815863.34184HepG2GRWD1
chr135057178150571837+5'-UTR,intron-Proximal3.122064.17079HepG2SUPV3L1
chr135057181350571856+5'-UTR5.3298751.37243HepG2AQR
chr135057112350571219+5'-UTR,intron-Distal4.956096.31097K562FAM120A
chr135057127450571286+5'-UTR,intron-Distal,intron-Proximal5.7884243.21860HepG2AQR
chr135057133150571365+5'-UTR,intron-Distal,intron-Proximal3.888059.95004K562BUD13
chr135057128450571322+5'-UTR,intron-Distal,intron-Proximal4.8760222.62936HepG2PRPF8
chr135057129650571439+5'-UTR,intron-Distal,intron-Proximal4.775515.51745K562XRN2
chr135057127350571331+5'-UTR,intron-Distal,intron-Proximal3.6886513.71339K562BUD13
chr135057135850571440+5'-UTR,intron-Distal,intron-Proximal3.475309.84291K562PRPF8
chr135057124250571368+5'-UTR,intron-Distal,intron-Proximal3.477654.22460K562RBM15
chr135057127650571417+5'-UTR,intron-Distal,intron-Proximal3.262776.78302HepG2PRPF4
chr135057131150571319+5'-UTR,intron-Distal,intron-Proximal7.2017747.95764K562AQR
chr135057179350571847+5'-UTR,intron-Proximal3.206114.56058HepG2BCLAF1
chr135057127450571352+5'-UTR,intron-Distal,intron-Proximal4.072955.47892K562DDX3X
chr135057127450571311+5'-UTR,intron-Distal,intron-Proximal7.7710090.81901K562AQR
chr135057178750571813+5'-UTR,intron-Proximal5.2721347.22110HepG2AQR
chr135057184750571899+5'-UTR3.176663.71797HepG2BCLAF1
chr135057177450571787+5'-UTR,intron-Proximal3.905876.57821HepG2AQR
chr135057127050571321+5'-UTR,intron-Distal,intron-Proximal4.3944710.11427HepG2BUD13
chr135057127450571367+5'-UTR,intron-Distal,intron-Proximal4.488775.65130HepG2SUPV3L1
chr135057113050571180+5'-UTR,intron-Distal5.325647.28794HepG2FAM120A
chr135057128650571315+5'-UTR,intron-Distal,intron-Proximal5.9150648.28795HepG2AQR
chr135057127150571323+5'-UTR,intron-Distal,intron-Proximal5.106604.52669HepG2EFTUD2
chr135057131950571408+5'-UTR,intron-Distal,intron-Proximal6.4807563.69736K562AQR
chr135057132250571418+5'-UTR,intron-Distal,intron-Proximal3.0756311.38255HepG2PRPF8
chr135057136550571410+5'-UTR,intron-Distal,intron-Proximal4.633985.29191K562BUD13
chr135057141750571505+5'-UTR,intron-Distal,intron-Proximal4.156964.35952HepG2PRPF4
chr135057179050571856+5'-UTR,intron-Proximal3.621704.97118HepG2U2AF2
chr135057127250571284+5'-UTR,intron-Distal,intron-Proximal5.3036821.49406HepG2PRPF8
chr135057117550571294+5'-UTR,intron-Distal,intron-Proximal4.305627.63297HepG2NCBP2
chr135057125750571393+5'-UTR,intron-Distal,intron-Proximal3.378187.65663K562EFTUD2
chr135057132150571410+5'-UTR,intron-Distal,intron-Proximal3.6003511.64842HepG2BUD13
chr135057127350571358+5'-UTR,intron-Distal,intron-Proximal4.2379311.32195K562PRPF8
chr135057132350571438+5'-UTR,intron-Distal,intron-Proximal3.626923.95154HepG2EFTUD2
chr135057177550571870+5'-UTR,intron-Proximal6.6165060.69657K562AQR
chr135057179650571868+5'-UTR,intron-Proximal3.287837.65809K562PRPF8
chr135058613050586173+CDS,intron-Distal4.337594.15208K562RBM15
chr135058667950586765+CDS,intron-Distal3.930533.80193HepG2GRWD1
chr135058650250586547+CDS,intron-Distal4.343634.82934K562RBM15
chr135058640950586456+CDS,intron-Distal4.518885.51215K562RBM15
chr135058235750582484+intron-Distal3.067873.73266K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRIM13 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRIM13 is not available on ENCORE database.

  • 42 RBPs can affect the levels of TRIM13.  








The Knockdown/knockout RNA-Seq assay for TRIM13 is not available on ENCORE database.





42 RBPs can affect the gene expression of TRIM13 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRIM13ENSG00000204977.5525.15090432.764100.279101.845501.33090HepG2ACO1
TRIM13ENSG00000204977.5415.49120588.87220-0.503103.215002.38390HepG2CIRBP
TRIM13ENSG00000204977.5372.20230654.92310-0.815206.561505.57590HepG2EIF4A3
TRIM13ENSG00000204977.5576.21510422.889100.446203.208702.31060HepG2EWSR1
TRIM13ENSG00000204977.5513.03480660.68950-0.364901.948401.36390HepG2FXR1
TRIM13ENSG00000204977.5337.39400241.894300.480002.107301.54430HepG2GPKOW
TRIM13ENSG00000204977.5323.96130422.66530-0.383702.593802.00750HepG2HNRNPU
TRIM13ENSG00000204977.5399.93160623.05820-0.639604.751703.88790HepG2IGF2BP2
TRIM13ENSG00000204977.5438.58540660.91970-0.591604.254303.44430HepG2MAGOH
TRIM13ENSG00000204977.5428.98190664.63520-0.631604.284603.51570HepG2MATR3
TRIM13ENSG00000204977.5445.87990305.387600.545903.890902.93550HepG2MSI2
TRIM13ENSG00000204977.5501.11560368.135400.444802.894101.44380HepG2NIP7
TRIM13ENSG00000204977.5510.52340640.97730-0.328302.572202.04180HepG2PTBP1
TRIM13ENSG00000204977.5426.00450628.08120-0.560104.611603.86480HepG2PUF60
TRIM13ENSG00000204977.5560.20500666.73370-0.251201.885001.37590HepG2PUM1
TRIM13ENSG00000204977.5723.12690410.608900.816404.650003.74900HepG2RAVER1
TRIM13ENSG00000204977.5501.47710387.222700.372902.366401.56670HepG2RBM15
TRIM13ENSG00000204977.5205.92410283.73700-0.462402.165801.61520HepG2RPS19
TRIM13ENSG00000204977.5507.57510679.61120-0.421102.061201.37070HepG2RPS3A
TRIM13ENSG00000204977.5251.84520376.41060-0.579804.624403.82660HepG2SAFB2
TRIM13ENSG00000204977.5540.68300667.35210-0.303702.184901.65060HepG2SF3B4
TRIM13ENSG00000204977.5392.53010254.239900.626502.744601.96680HepG2SNRNP70
TRIM13ENSG00000204977.5549.07210696.56630-0.343302.769302.29610HepG2SRSF1
TRIM13ENSG00000204977.5546.44160654.86590-0.261101.762801.33040HepG2SSB
TRIM13ENSG00000204977.5210.08940410.75240-0.9673010.039909.19090HepG2TIAL1
TRIM13ENSG00000204977.5327.25840414.36610-0.340502.181201.66860HepG2TRIM56
TRIM13ENSG00000204977.5428.66100322.708800.409502.182301.61770HepG2U2AF1
TRIM13ENSG00000204977.5507.03270348.668100.540104.634703.89110HepG2UTP3
TRIM13ENSG00000204977.5636.69330410.108700.634504.003902.41540HepG2ZRANB2
TRIM13ENSG00000204977.5598.81280464.656400.365802.333501.44300K562AKAP8
TRIM13ENSG00000204977.5552.64260439.999600.328701.860001.31990K562AKAP8L
TRIM13ENSG00000204977.5842.05840623.845000.432602.845102.24950K562AQR
TRIM13ENSG00000204977.5596.90270386.098400.628403.918003.04190K562G3BP2
TRIM13ENSG00000204977.5145.65460297.62700-1.031007.629506.68480K562HNRNPC
TRIM13ENSG00000204977.5616.34570466.946200.400402.895302.04910K562KIF1C
TRIM13ENSG00000204977.5672.13260523.098200.361602.351401.52340K562MBNL1
TRIM13ENSG00000204977.5568.82220366.654200.633503.735302.67180K562NAA15
TRIM13ENSG00000204977.5271.15330373.24680-0.461002.210101.46740K562PCBP3
TRIM13ENSG00000204977.5429.73990319.271900.428602.180301.51060K562PRPF8
TRIM13ENSG00000204977.5630.43590824.77070-0.387602.206901.47910K562PUF60
TRIM13ENSG00000204977.5676.48820436.352100.632505.210004.49490K562PUS1
TRIM13ENSG00000204977.5640.19580425.165000.590405.943005.10100K562RBM15
TRIM13ENSG00000204977.5196.83380298.29180-0.599702.664701.68300K562RPS3
TRIM13ENSG00000204977.5174.07300256.67790-0.560302.428101.55440K562TIAL1
TRIM13ENSG00000204977.5508.45840374.288000.441902.332901.34070K562U2AF1
TRIM13ENSG00000204977.5504.13520386.547200.383102.506701.74150K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRIM13 is not available on ENCORE database.






No RBPs affect the alternative splcing events of TRIM13 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for TRIM13 is not avaliable on ENCORE database.