TPRA1

General Information

Gene Name       : TPRA1
Gene ID             : ENSG00000163870.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TPRA1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TPRA1ENSG00000163870.152.638.715.67ENCSR000AEF
HepG2TPRA1ENSG00000163870.1517.069.3513.20ENCSR985KAT
K562TPRA1ENSG00000163870.159.537.498.51ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TPRA1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TPRA1 RNA is bound by 12 proteins.  







eCLIP assay for TPRA1 is not avaliable on ENCORE database.





12 proteins are bound to TPRA1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3127292006127292131-3'-UTR,intron-Distal4.003493.43895HepG2LARP4
chr3127293988127294050-3'-UTR,CDS,intron-Distal,intron-Proximal3.252805.82670HepG2PRPF8
chr3127292061127292233-3'-UTR,intron-Distal4.249264.49605HepG2UPF1
chr3127292617127292707-3'-UTR,CDS,intron-Distal4.992115.69951K562AQR
chr3127294566127294632-CDS,intron-Distal,intron-Proximal3.502793.96535HepG2AQR
chr3127294282127294333-CDS,intron-Distal4.023903.49905HepG2PPIG
chr3127295427127295537-CDS,intron-Distal,intron-Proximal3.212095.21025HepG2PPIG
chr3127294725127294824-CDS,intron-Distal,intron-Proximal4.3377710.26986HepG2PRPF8
chr3127295392127295467-CDS,intron-Distal,intron-Proximal4.327997.08947HepG2PRPF8
chr3127295392127295460-CDS,intron-Distal,intron-Proximal4.980759.56266K562AQR
chr3127295663127295712-CDS,intron-Distal,intron-Proximal3.758645.52342HepG2PPIG
chr3127298607127298662-CDS,intron-Distal3.546183.01531K562YBX3
chr3127295398127295462-CDS,intron-Distal,intron-Proximal4.245663.49003K562PRPF8
chr3127293737127293800-intron-Distal,intron-Proximal3.2386611.27720K562AGGF1
chr3127293859127293923-intron-Distal5.1376211.95802HepG2HNRNPL
chr3127293731127293791-intron-Distal,intron-Proximal4.625925.18391K562HNRNPL
chr3127294659127294715-intron-Distal,intron-Proximal4.7138510.18833HepG2EFTUD2
chr3127294416127294493-intron-Distal,intron-Proximal3.970293.90256HepG2PRPF4
chr3127295389127295443-intron-Distal,intron-Proximal4.893064.83371K562EFTUD2
chr3127293983127294028-intron-Distal,intron-Proximal3.234826.19808K562AQR
chr3127293579127293630-intron-Distal4.195478.89446K562HNRNPL
chr3127294374127294455-intron-Distal,intron-Proximal3.717784.77019K562BUD13
chr3127293807127293911-intron-Distal,intron-Proximal4.4038919.82858K562HNRNPL
chr3127295551127295594-intron-Distal,intron-Proximal4.097563.98427HepG2SF3B4
chr3127293630127293731-intron-Distal,intron-Proximal4.7435311.17521K562HNRNPL
chr3127294358127294427-intron-Distal,intron-Proximal4.470949.63445HepG2EFTUD2
chr3127292650127292735-intron-Distal4.389207.08280K562SF3B4
chr3127293831127293922-intron-Distal4.5298530.22352K562AGGF1
chr3127293813127293859-intron-Distal,intron-Proximal4.633187.68255HepG2HNRNPL
chr3127294349127294415-intron-Distal,intron-Proximal3.798783.05889HepG2SF3B4
chr3127293629127293705-intron-Distal4.047064.01234HepG2HNRNPL
chr3127293621127293737-intron-Distal,intron-Proximal4.3279734.26209K562AGGF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TPRA1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TPRA1 is not available on ENCORE database.

  • 51 RBPs can affect the levels of TPRA1.  








The Knockdown/knockout RNA-Seq assay for TPRA1 is not available on ENCORE database.





51 RBPs can affect the gene expression of TPRA1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TPRA1ENSG00000163870.10138.05420214.18120-0.633602.755001.68520HepG2AATF
TPRA1ENSG00000163870.10248.26560317.94410-0.356901.932901.40780HepG2ACO1
TPRA1ENSG00000163870.10107.61280219.30810-1.027105.196003.14400HepG2CSTF2T
TPRA1ENSG00000163870.10148.14930231.24040-0.642303.069202.10630HepG2DDX24
TPRA1ENSG00000163870.10577.97350421.010100.457002.465501.88000HepG2DDX6
TPRA1ENSG00000163870.10259.24640196.128400.402402.141301.55410HepG2DNAJC2
TPRA1ENSG00000163870.10135.59010217.59810-0.682402.862201.73490HepG2AGO1
TPRA1ENSG00000163870.10287.70620435.45360-0.597902.797102.10470HepG2EIF4B
TPRA1ENSG00000163870.10214.18840320.44470-0.581203.101402.27230HepG2FUBP3
TPRA1ENSG00000163870.10269.42110418.58650-0.635703.848103.06840HepG2G3BP1
TPRA1ENSG00000163870.10163.20460105.693900.626702.023301.47080HepG2GPKOW
TPRA1ENSG00000163870.10161.76820100.865700.681402.353401.76760HepG2HNRNPLL
TPRA1ENSG00000163870.10262.38830427.97470-0.705803.982702.75890HepG2KHSRP
TPRA1ENSG00000163870.10333.48210453.94550-0.444902.053301.50400HepG2MATR3
TPRA1ENSG00000163870.10377.53750467.92460-0.309702.026901.49420HepG2PCBP1
TPRA1ENSG00000163870.10295.95320476.10130-0.685906.160205.40710HepG2PTBP1
TPRA1ENSG00000163870.10336.25680515.69220-0.616905.443804.61050HepG2QKI
TPRA1ENSG00000163870.1082.56140187.97630-1.187002.347301.69450HepG2RAVER1
TPRA1ENSG00000163870.10255.88940439.71700-0.781107.022106.28600HepG2RBM22
TPRA1ENSG00000163870.10400.09600529.87950-0.405303.019702.45880HepG2NELFE
TPRA1ENSG00000163870.10378.02990493.46640-0.384502.741102.12740HepG2RECQL
TPRA1ENSG00000163870.10289.85930196.596100.560003.569502.85400HepG2SAFB2
TPRA1ENSG00000163870.10336.91040495.73570-0.557204.887304.13670HepG2SF3B4
TPRA1ENSG00000163870.10287.38090496.63830-0.789209.391308.61810HepG2SRFBP1
TPRA1ENSG00000163870.10277.58060517.41920-0.8984010.8675010.06450HepG2SRSF1
TPRA1ENSG00000163870.10169.38810420.92950-1.3132019.2026017.99100HepG2SRSF9
TPRA1ENSG00000163870.10577.44280431.189300.421303.643103.07250HepG2SSB
TPRA1ENSG00000163870.10112.27290214.36950-0.933103.225502.50190HepG2SUPV3L1
TPRA1ENSG00000163870.10269.14740465.01680-0.788908.007107.13300HepG2TAF15
TPRA1ENSG00000163870.10147.86120214.52900-0.536902.411901.93960HepG2TIAL1
TPRA1ENSG00000163870.10153.66220269.97990-0.813101.980101.43920HepG2U2AF1
TPRA1ENSG00000163870.10339.38290208.122800.705405.184204.44780K562AGGF1
TPRA1ENSG00000163870.10334.40210216.558500.626702.369701.76400K562AKAP8L
TPRA1ENSG00000163870.10514.69640362.386200.506103.161102.54170K562AQR
TPRA1ENSG00000163870.10283.47680203.485300.478202.298801.54890K562EIF4A3
TPRA1ENSG00000163870.10507.28830367.393500.465402.989802.01370K562EIF4G2
TPRA1ENSG00000163870.1084.11940142.45790-0.760002.685501.57870K562FKBP4
TPRA1ENSG00000163870.1017.7329074.30800-2.067103.879703.00920K562G3BP2
TPRA1ENSG00000163870.10597.91980388.454900.622105.099904.07220K562GRSF1
TPRA1ENSG00000163870.10311.93930221.520600.493702.642401.61270K562HNRNPL
TPRA1ENSG00000163870.10195.98320115.390700.764103.146602.02810K562IGF2BP2
TPRA1ENSG00000163870.10213.61640121.264400.816804.796003.68170K562MAGOH
TPRA1ENSG00000163870.10228.62530121.017300.917706.057404.61910K562MATR3
TPRA1ENSG00000163870.10333.04340229.310000.538303.707602.85800K562NSUN2
TPRA1ENSG00000163870.10228.02220109.655901.056103.645602.46500K562PABPN1
TPRA1ENSG00000163870.10189.82660117.816400.688003.393302.66660K562PTBP1
TPRA1ENSG00000163870.10308.08850214.786200.520302.363001.85260K562PUS1
TPRA1ENSG00000163870.10291.79170209.260600.479502.408501.84840K562RBM15
TPRA1ENSG00000163870.10292.01580122.177901.257005.304903.26340K562SFPQ
TPRA1ENSG00000163870.10205.09520115.500100.828304.319103.43980K562SRSF1
TPRA1ENSG00000163870.10216.64320116.892100.890004.979304.01610K562TARDBP
TPRA1ENSG00000163870.10205.49950112.756000.865804.677603.57190K562TIA1
TPRA1ENSG00000163870.10214.58280141.348200.602202.360701.50150K562TIAL1
TPRA1ENSG00000163870.10229.17370150.234200.609102.708401.77420K562TRIM56
TPRA1ENSG00000163870.10555.96520408.266500.445402.974102.07440K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TPRA1 is not available on ENCORE database.





6 RBPs can affect the splicing of TPRA1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETPRA1ENSG00000163870.10chr3-1272950271272950981272947821272948931272954591272955390.142000.000050.00622includedHepG2RBM22
SETPRA1ENSG00000163870.10chr3-127294591127294652127294245127294348127294782127294893-0.336000.000580.01294excludedHepG2U2AF1
SETPRA1ENSG00000163870.10chr3-127294782127294893127294591127294652127295459127295539-0.320000.000000.00008excludedK562PUS1
A3SSTPRA1ENSG00000163870.10chr3-1272985821272987431272985821272987151272988641272990060.141000.001020.00707longerK562AQR
MXETPRA1ENSG00000163870.10chr3-127294591127294652127294782127294893127294027127294108127295459127295539-0.291000.000010.000302includedK562PUS1
MXETPRA1ENSG00000163870.10chr3-1272958321272960171272985821272987431272956631272957361272988641272990060.108000.013230.079321includedK562AQR
MXETPRA1ENSG00000163870.10chr3-127298582127298715127298864127299006127295663127295736127309725127309938-0.150000.008330.054592includedK562AQR
MXETPRA1ENSG00000163870.10chr3-1272945911272946521272947821272948931272942451272943481272954591272955390.406000.008170.080291includedK562U2AF2
MXETPRA1ENSG00000163870.10chr3-127294245127294348127294591127294652127294027127294108127294782127294893-0.198000.000850.033102includedHepG2NCBP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TPRA1 is not avaliable on ENCORE database.