TATDN3

General Information

Gene Name       : TATDN3
Gene ID             : ENSG00000203705.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TATDN3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TATDN3ENSG00000203705.1012.7712.0812.43ENCSR000AEF
HepG2TATDN3ENSG00000203705.102.614.043.33ENCSR985KAT
K562TATDN3ENSG00000203705.1016.4718.0317.25ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TATDN3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TATDN3 RNA is bound by 7 proteins.  







eCLIP assay for TATDN3 is not avaliable on ENCORE database.





7 proteins are bound to TATDN3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1212989192212989228+3'-UTR4.286453.69433K562UPF1
chr1212977661212977718+3'-UTR,CDS,intron-Distal,intron-Proximal4.422225.20653K562LIN28B
chr1212976063212976107+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.647956.63777K562LIN28B
chr1212981042212981124+3'-UTR,CDS,intron-Distal,intron-Proximal3.757375.83621K562AQR
chr1212989537212989603+3'-UTR3.371416.48866K562UPF1
chr1212965246212965330+5'-UTR,CDS,intron-Proximal4.218579.45490K562DDX3X
chr1212968422212968472+CDS,intron-Proximal3.224263.01994K562BUD13
chr1212986776212986869+intron-Distal3.607853.06150K562KHSRP
chr1212973995212974082+intron-Distal3.817084.69074K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TATDN3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TATDN3 is not available on ENCORE database.

  • 56 RBPs can affect the levels of TATDN3.  








The Knockdown/knockout RNA-Seq assay for TATDN3 is not available on ENCORE database.





56 RBPs can affect the gene expression of TATDN3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TATDN3ENSG00000203705.6116.8546068.431300.771902.318001.33380HepG2AATF
TATDN3ENSG00000203705.6153.5398088.190200.799803.747303.06040HepG2ACO1
TATDN3ENSG00000203705.6377.59220162.310101.218008.869107.97670HepG2AKAP1
TATDN3ENSG00000203705.6204.99860134.295600.610102.350601.62350HepG2ASCC1
TATDN3ENSG00000203705.6123.5537067.869900.864203.001802.38150HepG2BOP1
TATDN3ENSG00000203705.6216.89980146.704300.564002.740302.10040HepG2CELF1
TATDN3ENSG00000203705.6135.8478075.985000.838102.446501.71510HepG2DDX55
TATDN3ENSG00000203705.6264.45120133.569000.985305.379004.54400HepG2DDX6
TATDN3ENSG00000203705.6206.01310141.881200.538001.852401.32540HepG2EIF4A3
TATDN3ENSG00000203705.6312.68310188.651600.728905.595404.78980HepG2ETF1
TATDN3ENSG00000203705.6150.0672079.688700.913102.665301.90910HepG2FIP1L1
TATDN3ENSG00000203705.6175.3977096.126200.867503.473502.22040HepG2FUS
TATDN3ENSG00000203705.6203.64170134.495800.598402.265001.62910HepG2HNRNPK
TATDN3ENSG00000203705.6135.5867067.411601.008003.705602.98760HepG2HNRNPLL
TATDN3ENSG00000203705.6151.8857098.279700.627902.570001.47640HepG2LARP7
TATDN3ENSG00000203705.682.29640144.01880-0.807402.643002.02630HepG2MATR3
TATDN3ENSG00000203705.6131.7603089.826800.552601.896501.36700HepG2PUS1
TATDN3ENSG00000203705.6153.7578083.023900.889002.475201.66000HepG2RBM15
TATDN3ENSG00000203705.6115.66940197.11000-0.769002.579601.80680HepG2RPS3A
TATDN3ENSG00000203705.691.50760143.16900-0.645802.466401.79820HepG2SLBP
TATDN3ENSG00000203705.6151.2667074.244801.026603.496702.61300HepG2SNRNP70
TATDN3ENSG00000203705.6243.63290178.091400.452002.159801.70000HepG2SRFBP1
TATDN3ENSG00000203705.6183.39440119.652400.616002.941902.37650HepG2SRSF9
TATDN3ENSG00000203705.695.09590154.62570-0.701303.028602.49730HepG2SSB
TATDN3ENSG00000203705.6170.6687075.641901.173804.757903.90750HepG2SUPV3L1
TATDN3ENSG00000203705.6181.13510121.466400.576402.453201.66330HepG2TIA1
TATDN3ENSG00000203705.6129.6776068.141900.928202.715302.09180HepG2U2AF1
TATDN3ENSG00000203705.6623.27520835.50920-0.422802.948501.67980K562ABCF1
TATDN3ENSG00000203705.6638.64590927.80470-0.538804.650303.94810K562AGGF1
TATDN3ENSG00000203705.6680.66690965.39190-0.504202.960902.28470K562AKAP8L
TATDN3ENSG00000203705.6891.573501169.80090-0.391803.416302.77890K562AQR
TATDN3ENSG00000203705.6527.15180665.73000-0.336702.642101.70570K562BCLAF1
TATDN3ENSG00000203705.6163.61210272.51020-0.736004.458803.05970K562CCAR1
TATDN3ENSG00000203705.6577.14790735.40940-0.349602.812301.69700K562CPEB4
TATDN3ENSG00000203705.6377.45330499.35930-0.403802.572401.81500K562CPSF6
TATDN3ENSG00000203705.6373.86980505.05540-0.433903.016401.90930K562CSTF2
TATDN3ENSG00000203705.6334.84700475.96290-0.507303.010802.05840K562EFTUD2
TATDN3ENSG00000203705.6370.61660509.58680-0.459402.358201.41160K562EIF3D
TATDN3ENSG00000203705.6987.495801297.72190-0.394104.815603.59290K562EIF4G2
TATDN3ENSG00000203705.6774.57020533.212000.538603.351202.55910K562G3BP2
TATDN3ENSG00000203705.6304.78550454.65340-0.577004.036702.62470K562HNRNPF
TATDN3ENSG00000203705.6669.22340494.067400.437702.586501.68960K562HNRNPM
TATDN3ENSG00000203705.61038.31150814.306900.350502.399401.65500K562HSPD1
TATDN3ENSG00000203705.6780.682001024.63070-0.392302.386001.62870K562KIF1C
TATDN3ENSG00000203705.6880.432301147.83000-0.382603.070202.10370K562MBNL1
TATDN3ENSG00000203705.6585.59410804.53620-0.458302.580401.73410K562NAA15
TATDN3ENSG00000203705.6407.50190726.44600-0.834009.448007.60820K562PCBP2
TATDN3ENSG00000203705.61040.296201333.45390-0.358203.102701.58430K562PNPT1
TATDN3ENSG00000203705.6336.74590456.45090-0.438802.105901.32740K562PSIP1
TATDN3ENSG00000203705.61067.329901475.61150-0.467306.476604.99220K562PUM2
TATDN3ENSG00000203705.6595.15300957.62550-0.686205.990005.22850K562PUS1
TATDN3ENSG00000203705.6732.66560932.87810-0.348502.268001.72190K562RBM15
TATDN3ENSG00000203705.6525.57500760.67150-0.533404.631303.51140K562RBM22
TATDN3ENSG00000203705.6513.30280887.69210-0.790203.449901.69180K562RBM39
TATDN3ENSG00000203705.6394.43580757.85760-0.942104.613002.90280K562SNRNP200
TATDN3ENSG00000203705.6261.98760394.84350-0.591803.636602.41210K562SRFBP1
TATDN3ENSG00000203705.6582.63480777.57530-0.416403.321102.55080K562SRSF1
TATDN3ENSG00000203705.6356.75140466.47970-0.386902.186901.36050K562TRIM56
TATDN3ENSG00000203705.6447.77980636.93770-0.508402.985401.73390K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TATDN3 is not available on ENCORE database.





5 RBPs can affect the splicing of TATDN3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETATDN3ENSG00000203705.6chr1+212981077212981190212977937212977993212985592212985670-0.062000.008490.07129excludedK562AQR
SETATDN3ENSG00000203705.6chr1+212977937212977993212977661212977771212981077212981190-0.083000.001170.02562excludedK562U2AF1
SETATDN3ENSG00000203705.6chr1+2129662432129663232129652622129653292129684362129684690.064000.000480.09625includedK562PPIL4
SETATDN3ENSG00000203705.6chr1+212977937212977993212977661212977771212981077212981190-0.063000.003910.05954excludedK562U2AF2
SETATDN3ENSG00000203705.6chr1+212981077212981190212977937212977993212985592212985670-0.073000.003010.06400excludedK562AGGF1
A3SSTATDN3ENSG00000203705.6chr1+2129704352129705382129704532129705382129698582129699320.126000.000000.00000longerK562AQR
MXETATDN3ENSG00000203705.6chr1+2129704352129705382129760422129761052129698582129699322129776612129777710.101000.000000.000041includedK562AQR
MXETATDN3ENSG00000203705.6chr1+2129778802129779932129810772129811902129776612129777712129855922129856700.172000.001640.014021includedK562AQR
MXETATDN3ENSG00000203705.6chr1+2129778802129779932129810092129811902129776612129777712129855922129856700.176000.001450.012591includedK562AQR
MXETATDN3ENSG00000203705.6chr1+2129778802129779932129810772129811902129776612129777712129855892129856700.102000.000260.002831includedK562AQR
MXETATDN3ENSG00000203705.6chr1+2129778802129779932129810092129811902129776612129777712129855892129856700.103000.000240.002601includedK562AQR
MXETATDN3ENSG00000203705.6chr1+212977937212977993212981077212981190212977661212977771212985592212985670-0.134000.010200.094012includedK562U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TATDN3 is not avaliable on ENCORE database.