SNX13

General Information

Gene Name       : SNX13
Gene ID             : ENSG00000071189.21
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNX13)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNX13ENSG00000071189.215.337.546.44ENCSR000AEF
HepG2SNX13ENSG00000071189.2110.2214.3212.27ENCSR985KAT
K562SNX13ENSG00000071189.2113.9816.1915.09ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNX13 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNX13 RNA is bound by 19 proteins.  







eCLIP assay for SNX13 is not avaliable on ENCORE database.





19 proteins are bound to SNX13 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr71792080417920887-3'-UTR,intron-Distal4.540896.23114K562TARDBP
chr71787942517879480-3'-UTR,CDS,intron-Distal,intron-Proximal3.588875.56491HepG2BCLAF1
chr71786565517865730-3'-UTR,CDS,intron-Distal,intron-Proximal4.770094.20763HepG2U2AF2
chr71787363717873696-3'-UTR,CDS,intron-Distal,intron-Proximal5.291217.59497HepG2PRPF8
chr71784120917841336-3'-UTR,CDS,intron-Distal,intron-Proximal4.937684.40745K562SF3B4
chr71787444917874489-3'-UTR,CDS,intron-Distal,intron-Proximal5.023407.05570HepG2BCLAF1
chr71791321117913241-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.602543.68471HepG2BCLAF1
chr71789047817890542-3'-UTR,CDS,intron-Distal4.283827.49468HepG2BCLAF1
chr71791509617915192-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.584689.76012HepG2PPIG
chr71787942517879521-3'-UTR,CDS,intron-Distal,intron-Proximal4.966517.02609K562UCHL5
chr71785580417855860-3'-UTR,CDS,intron-Distal,intron-Proximal4.457783.45943HepG2BCLAF1
chr71783343217833580-3'-UTR,intron-Distal3.354373.10157K562IGF2BP1
chr71787953217879595-3'-UTR,CDS,intron-Distal3.477556.60490HepG2BCLAF1
chr71789044617890478-3'-UTR,CDS,intron-Distal,intron-Proximal3.156344.34695HepG2BCLAF1
chr71783333717833379-3'-UTR,intron-Distal,intron-Proximal4.779314.57464K562PUM2
chr71792225717922329-3'-UTR,intron-Distal4.370803.05187HepG2QKI
chr71787438617874449-3'-UTR,CDS,intron-Distal3.549645.45876HepG2BCLAF1
chr71791509917915204-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.0075513.49474HepG2BCLAF1
chr71787365617873710-3'-UTR,CDS,intron-Distal,intron-Proximal3.009333.85381HepG2BCLAF1
chr71785445517854565-3'-UTR,CDS,intron-Distal,intron-Proximal4.261626.65960HepG2BCLAF1
chr71783833717838414-3'-UTR,CDS,intron-Distal,intron-Proximal4.466594.45977HepG2U2AF2
chr71793116417931212-5'-UTR,CDS,intron-Distal,intron-Proximal4.381363.89826HepG2BCLAF1
chr71797992217980021-5'-UTR,intron-Distal3.396114.50631HepG2DDX3X
chr71797992617979991-5'-UTR,intron-Distal3.619905.89284K562RBM15
chr71793701217937123-CDS,intron-Distal,intron-Proximal4.137954.69223K562SF3B4
chr71795374717953820-intron-Distal4.047333.62025K562MATR3
chr71795428017954332-intron-Distal3.941183.34098HepG2HNRNPM
chr71793726117937373-intron-Distal,intron-Proximal4.2715710.28391K562KHSRP
chr71787347717873622-intron-Distal,intron-Proximal3.588794.54121HepG2KHSRP
chr71795437617954428-intron-Distal6.7990132.28668K562HNRNPM
chr71795689217956951-intron-Distal5.9821832.68989K562EXOSC5
chr71790436417904457-intron-Distal4.486984.07628HepG2PTBP1
chr71795534717955370-intron-Distal4.7360112.22458K562EXOSC5
chr71795549017955547-intron-Distal4.668935.31171K562HNRNPM
chr71794457617944659-intron-Distal3.223353.10639HepG2PTBP1
chr71795710917957179-intron-Distal7.6242050.75874K562EXOSC5
chr71790555117905612-intron-Distal4.006983.54208HepG2SUGP2
chr71793655017936625-intron-Distal4.620295.62258K562KHSRP
chr71795427917954335-intron-Distal4.436814.28571K562HNRNPM
chr71795801417958054-intron-Distal6.0218915.32150K562EXOSC5
chr71795608617956128-intron-Distal5.4663829.08219K562EXOSC5
chr71795524317955316-intron-Distal4.557454.12563HepG2EXOSC5
chr71797088817970972-intron-Distal3.225117.20875K562KHSRP
chr71795467517954701-intron-Distal4.8903814.16920K562EXOSC5
chr71784106117841141-intron-Distal,intron-Proximal3.958523.47043HepG2KHSRP
chr71790436417904451-intron-Distal4.374827.56720K562PTBP1
chr71786869517868751-intron-Distal4.017063.45805K562KHSRP
chr71787203417872058-intron-Distal4.173744.72162K562KHSRP
chr71797540817975467-intron-Distal4.172843.05187HepG2QKI
chr71795618117956230-intron-Distal5.4160230.39987K562EXOSC5
chr71795437917954429-intron-Distal5.4869910.99895HepG2HNRNPM
chr71786875117868827-intron-Distal4.440585.41654K562KHSRP
chr71784078117840861-intron-Distal3.634633.48890K562KHSRP
chr71795333617953370-intron-Distal4.431029.69330K562EXOSC5
chr71796533617965434-intron-Distal4.2583212.30819HepG2PTBP1
chr71795438417954428-intron-Distal5.1318320.57628K562EXOSC5
chr71796536517965436-intron-Distal5.0008419.12294K562PTBP1
chr71784035417840430-intron-Distal4.741715.62258K562KHSRP
chr71795395617953986-intron-Distal5.9518614.31968K562EXOSC5
chr71795605417956086-intron-Distal5.9234629.34967K562EXOSC5
chr71795431417954368-intron-Distal4.113233.47525K562MATR3
chr71795747017957550-intron-Distal4.022013.62238HepG2MATR3
chr71795580017955850-intron-Distal4.173186.25630K562HNRNPM
chr71795760617957666-intron-Distal4.111193.54147K562HNRNPM
chr71783990817839961-intron-Distal4.143944.07352K562KHSRP
chr71795550817955547-intron-Distal5.2338117.11005K562EXOSC5
chr71787215917872214-intron-Distal3.032854.79074K562KHSRP
chr71796870517968831-intron-Distal4.063605.75812K562PTBP1
chr71795327517953331-intron-Distal5.1429116.78015K562EXOSC5
chr71793790717937959-intron-Distal,intron-Proximal3.979093.45805K562KHSRP
chr71793798417938051-intron-Distal,intron-Proximal3.597745.14864K562KHSRP
chr71793642417936482-intron-Distal3.390654.30679K562KHSRP
chr71795601817956054-intron-Distal6.5259323.36166K562EXOSC5
chr71790403217904081-intron-Distal3.315323.84025HepG2SUGP2
chr71795580717955882-intron-Distal3.465503.56409K562MATR3
chr71794858217948663-intron-Distal3.767293.06015K562MATR3
chr71795673917956767-intron-Distal5.8516713.32155K562EXOSC5
chr71788974017889893-intron-Distal,intron-Proximal4.355034.10688K562KHSRP
chr71795432217954348-intron-Distal4.8603113.51953K562EXOSC5
chr71795436817954449-intron-Distal3.285553.09339K562MATR3
chr71795311217953192-intron-Distal5.1787217.10772K562EXOSC5
chr71785017017850222-intron-Distal4.304824.48560K562EXOSC5
chr71787221417872235-intron-Distal3.515645.61949K562KHSRP
chr71785070817850794-intron-Distal5.111317.71416K562EXOSC5
chr71795625617956293-intron-Distal6.5045144.41940K562EXOSC5
chr71795403317954073-intron-Distal6.2596817.65810K562EXOSC5
chr71795508217955132-intron-Distal6.5095221.68126K562EXOSC5
chr71795556417955606-intron-Distal5.1807824.81822K562EXOSC5
chr71795274417952783-intron-Distal4.944256.41216K562EXOSC5
chr71795303817953126-intron-Distal3.804706.25630K562HNRNPM
chr71784190717842031-intron-Distal5.8736110.62660K562QKI
chr71797831317978405-intron-Distal4.149293.89294K562KHSRP
chr71787218917872339-intron-Distal4.613453.73609HepG2KHSRP
chr71787349517873597-intron-Distal,intron-Proximal4.368268.98664K562KHSRP
chr71795549217955543-intron-Distal4.216973.97018HepG2HNRNPM
chr71784107617841147-intron-Distal,intron-Proximal3.023203.96958K562KHSRP
chr71796536017965432-intron-Distal3.142614.18806HepG2U2AF2
chr71795560617955640-intron-Distal6.2851717.32582K562EXOSC5
chr71795645117956481-intron-Distal6.2791817.65810K562EXOSC5
chr71787927217879390-intron-Distal,intron-Proximal3.751803.45805K562KHSRP
chr71795376217953802-intron-Distal4.1254318.42329K562EXOSC5
chr71795771417957762-intron-Distal6.6517725.72071K562EXOSC5
chr71784189717841966-intron-Distal4.738565.54528HepG2QKI
chr71791395917914065-intron-Distal4.8381811.97691K562QKI
chr71795762717957651-intron-Distal5.6468411.66247K562EXOSC5
chr71787103017871088-intron-Distal5.261577.41017K562PTBP1
chr71793648217936550-intron-Distal4.235173.66668K562KHSRP
chr71795579817955853-intron-Distal6.0006562.62013K562EXOSC5
chr71795524117955298-intron-Distal6.0036330.34958K562EXOSC5
chr71795722517957283-intron-Distal6.7410926.72808K562EXOSC5
chr71784043017840505-intron-Distal3.249525.17040K562KHSRP
chr71795173517951830-intron-Distal4.154033.90241K562MATR3
chr71795703817957077-intron-Distal6.3166617.65810K562EXOSC5
chr71795867817958740-intron-Distal4.042217.01333K562EXOSC5
chr71786145817861553-intron-Distal3.846073.24603K562KHSRP
chr71790089617901013-intron-Distal4.171714.38266K562TARDBP
chr71795699417957038-intron-Distal6.5554524.70740K562EXOSC5
chr71789889917899133-intron-Distal3.587495.35459K562KHSRP
chr71795686217956920-intron-Distal3.766584.81774K562HNRNPM
chr71787085617870906-intron-Distal3.361234.52210K562KHSRP
chr71790403117904104-intron-Distal3.820743.33944K562MATR3
chr71787359717873631-intron-Distal,intron-Proximal4.410714.72162K562KHSRP
chr71795573517955778-intron-Distal6.3094518.99740K562EXOSC5
chr71794840117948485-intron-Distal3.531855.56048K562KHSRP
chr71788551617885655-intron-Distal4.035323.45805K562KHSRP
chr71795463717954675-intron-Distal5.1593825.46967K562EXOSC5
chr71790436517904457-intron-Distal5.341308.60492HepG2PCBP2
chr71787197117872034-intron-Distal3.187855.62342K562KHSRP
chr71791398117914116-intron-Distal4.6984812.70600HepG2QKI
chr71784020317840263-intron-Distal4.162204.07352K562KHSRP
chr71795312617953169-intron-Distal3.799973.04182K562HNRNPM
chr71796868517968842-intron-Distal3.354874.08242HepG2PTBP1
chr71795629317956308-intron-Distal6.2598636.36860K562EXOSC5
chr71797071617970783-intron-Distal3.472585.54602K562QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNX13 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNX13 is not available on ENCORE database.

  • 66 RBPs can affect the levels of SNX13.  








The Knockdown/knockout RNA-Seq assay for SNX13 is not available on ENCORE database.





66 RBPs can affect the gene expression of SNX13 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNX13ENSG00000071189.17953.14400804.510300.244502.029201.35890HepG2AKAP8L
SNX13ENSG00000071189.17374.90240663.90340-0.824506.037904.62800HepG2BCCIP
SNX13ENSG00000071189.17904.12530576.924800.648005.792004.54400HepG2BCLAF1
SNX13ENSG00000071189.171095.70300647.553400.758709.145807.96480HepG2CPSF6
SNX13ENSG00000071189.17548.41750410.152400.419002.744301.67140HepG2CSTF2
SNX13ENSG00000071189.17907.68610622.758200.543405.047604.15980HepG2DDX21
SNX13ENSG00000071189.17785.29230609.455900.365602.674101.77760HepG2DDX24
SNX13ENSG00000071189.171124.47060827.719000.441903.573302.43000HepG2DDX5
SNX13ENSG00000071189.17846.78500624.694200.438703.532602.43140HepG2DHX30
SNX13ENSG00000071189.171153.68840766.065400.590609.527208.42360HepG2DKC1
SNX13ENSG00000071189.17536.94410641.94140-0.257701.891301.33390HepG2DNAJC2
SNX13ENSG00000071189.17666.90890923.45560-0.469603.287402.64510HepG2EIF2S1
SNX13ENSG00000071189.17759.80800588.120600.369402.760401.67980HepG2EIF3G
SNX13ENSG00000071189.171345.130101020.596400.398202.613201.99100HepG2EIF4A3
SNX13ENSG00000071189.171199.61310885.448100.438003.464402.56060HepG2EIF4G2
SNX13ENSG00000071189.17994.24930728.550700.448503.538202.31010HepG2ESF1
SNX13ENSG00000071189.17812.56120593.486900.453203.780002.47430HepG2FASTKD2
SNX13ENSG00000071189.17846.96270562.003800.591605.911204.78320HepG2FUBP3
SNX13ENSG00000071189.17766.648501029.52900-0.425302.970902.25280HepG2FXR1
SNX13ENSG00000071189.17568.45190824.77800-0.537002.993901.83550HepG2GRSF1
SNX13ENSG00000071189.17617.36030853.59130-0.467406.536305.54320HepG2HNRNPL
SNX13ENSG00000071189.171110.22430700.535700.664206.748705.81380HepG2HNRNPLL
SNX13ENSG00000071189.17393.32530722.52430-0.8773014.7317013.42450HepG2HNRNPU
SNX13ENSG00000071189.17814.354201035.68580-0.346901.886501.36030HepG2MATR3
SNX13ENSG00000071189.17858.31000687.309800.320402.119501.40650HepG2MSI2
SNX13ENSG00000071189.171096.75020761.758900.525703.013901.93040HepG2PCBP2
SNX13ENSG00000071189.17820.71560635.856000.368103.531602.66730HepG2PRPF4
SNX13ENSG00000071189.171320.585001011.187300.385004.078503.34010HepG2QKI
SNX13ENSG00000071189.171517.59730735.198701.045508.365807.18290HepG2RAVER1
SNX13ENSG00000071189.17706.255601120.96000-0.6665010.477809.61260HepG2RBM22
SNX13ENSG00000071189.17657.46080498.232900.400002.293901.57130HepG2RRP9
SNX13ENSG00000071189.17881.56190693.402700.346302.317301.66870HepG2SF3B1
SNX13ENSG00000071189.171129.18040850.312200.409105.486704.55620HepG2SLBP
SNX13ENSG00000071189.171040.99210771.528200.432102.099701.42240HepG2SNRNP70
SNX13ENSG00000071189.171486.556601014.646400.550909.969309.19630HepG2SRSF1
SNX13ENSG00000071189.171073.14280746.073100.524403.484502.34750HepG2SRSF3
SNX13ENSG00000071189.171065.99250875.635800.283702.432201.84080HepG2SRSF5
SNX13ENSG00000071189.171190.72010825.478400.528408.665907.78500HepG2SRSF9
SNX13ENSG00000071189.171695.054901099.259800.6247014.2571013.27430HepG2SSB
SNX13ENSG00000071189.17829.25740649.821100.351702.031401.43890HepG2SUPV3L1
SNX13ENSG00000071189.171105.55720838.002800.399603.822102.84700HepG2TIA1
SNX13ENSG00000071189.17492.51870708.34050-0.524305.779805.01850HepG2TRIM56
SNX13ENSG00000071189.171145.44340996.923200.200301.919101.44110HepG2ZNF622
SNX13ENSG00000071189.171122.053301417.73300-0.337404.094603.32300K562DDX47
SNX13ENSG00000071189.17706.69450947.01460-0.422304.894903.26500K562EIF2S1
SNX13ENSG00000071189.17756.49670960.64780-0.344703.117902.36160K562EIF2S2
SNX13ENSG00000071189.17581.31750811.16590-0.480702.706801.57220K562EIF4B
SNX13ENSG00000071189.17753.16540936.71420-0.314602.674602.07810K562FXR1
SNX13ENSG00000071189.17677.677101280.25240-0.9178014.6994012.91780K562GRSF1
SNX13ENSG00000071189.17478.82160792.68440-0.727307.517906.57980K562HNRNPC
SNX13ENSG00000071189.17911.464801281.31090-0.491405.311403.79270K562HNRNPL
SNX13ENSG00000071189.17707.202801025.74120-0.536506.901705.48690K562HNRNPU
SNX13ENSG00000071189.17998.842801239.65260-0.311602.214001.49990K562HSPD1
SNX13ENSG00000071189.17515.43410710.76330-0.463603.632502.62190K562METAP2
SNX13ENSG00000071189.17781.08760946.00250-0.276402.310101.56940K562MTPAP
SNX13ENSG00000071189.171491.754801065.006300.486003.231402.26310K562NAA15
SNX13ENSG00000071189.17887.040701051.03250-0.244702.458001.75000K562NSUN2
SNX13ENSG00000071189.171094.43000849.111000.366102.246001.49740K562PCBP3
SNX13ENSG00000071189.17809.96540651.294100.314502.266801.54130K562POLR2G
SNX13ENSG00000071189.17798.490901037.90670-0.378302.802701.97490K562PPIG
SNX13ENSG00000071189.17456.42060710.69990-0.638905.256003.95570K562PSIP1
SNX13ENSG00000071189.171711.215202146.22830-0.326803.783402.65750K562PUM2
SNX13ENSG00000071189.171868.664401267.480600.559906.269205.49120K562PUS1
SNX13ENSG00000071189.171384.73430953.814700.537702.798801.37260K562RAVER1
SNX13ENSG00000071189.171577.800901234.952500.353403.965703.27140K562RBM15
SNX13ENSG00000071189.17898.240001169.05250-0.380202.830201.72410K562NELFE
SNX13ENSG00000071189.17831.638901037.19200-0.318702.772701.95720K562SF3A3
SNX13ENSG00000071189.171290.929801062.633800.280703.315702.30170K562SRPK2
SNX13ENSG00000071189.171365.736401135.576900.266202.072001.45000K562SRSF1
SNX13ENSG00000071189.17591.05910788.69780-0.416203.140402.00200K562SRSF4
SNX13ENSG00000071189.17868.679801149.35960-0.403903.125302.37330K562TARDBP
SNX13ENSG00000071189.17892.912601108.66570-0.312202.484501.71520K562TIA1
SNX13ENSG00000071189.17508.64830683.58890-0.426502.497001.61290K562TIAL1
SNX13ENSG00000071189.171445.132501000.798800.529907.135105.85360K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNX13 is not available on ENCORE database.





5 RBPs can affect the splicing of SNX13 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNX13ENSG00000071189.17chr7-178696321786967017865644178657141787367417873807-0.458000.000000.00000excludedK562AQR
SESNX13ENSG00000071189.17chr7-1792058917920656179152911791541317929985179301070.135000.000070.03878includedHepG2DROSHA
A3SSSNX13ENSG00000071189.17chr7-178611311786130417861131178612711786564417865714-0.088000.001230.09151shorterK562AKAP8L
A3SSSNX13ENSG00000071189.17chr7-1786113117861304178611311786127117865644178657140.138000.000090.05160longerHepG2DROSHA
A3SSSNX13ENSG00000071189.17chr7-1785580417855939178558041785591217861131178613200.114000.000010.00013longerK562AQR
A3SSSNX13ENSG00000071189.17chr7-1784121017841355178412101784128217843041178432030.063000.000910.00641longerK562AQR
A3SSSNX13ENSG00000071189.17chr7-1793112217931306179311221793125817932954179330570.098000.000010.00008longerK562AQR
A3SSSNX13ENSG00000071189.17chr7-1791315017913354179131501791323917915102179152040.079000.000870.00614longerK562AQR
A3SSSNX13ENSG00000071189.17chr7-1788996917890080178899691789005817890448178905870.113000.000320.00251longerK562AQR
A3SSSNX13ENSG00000071189.17chr7-1783644917836605178364491783656217838312178383810.138000.000730.03796longerK562PUS1
A3SSSNX13ENSG00000071189.17chr7-1786113117861304178611311786127117865644178657140.156000.000730.03056longerHepG2U2AF1
MXESNX13ENSG00000071189.17chr7-17885217178853171788996917890080178794291787962317890448178905870.067000.005030.036131includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNX13 is not avaliable on ENCORE database.